Cicer_arietinum_v1_Contig2614

Contig Overview


Name	Cicer_arietinum_v1_Contig2614
Unique Name	Cicer_arietinum_v1_Contig2614
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	1158

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GR391265	EST	GR391265:1..698 -
HO067798	EST	HO067798:527..1075 +
FE671178	EST	FE671178:607..1158 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR391265	GR391265	Cicer arietinum	EST
HO067798	HO067798	Cicer arietinum	EST
FE671178	FE671178	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. SwissProt
Match: NYC1_ORYSJ (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica GN=NYC1 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 7.679e-49
Identity = 93/102 (91.18%), Postives = 100/102 (98.04%), Query Frame = -2

Query:  852 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGNNLPGT 1157
            LVPRMRVVKG+GKAINYLTPPRILLALVTAW+RRGRWFD+EGRA+YAAEADR+RNWAE+RARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSS+G  LPGT
Sbjct:  403 LVPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDEEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSSGGPLPGT 504

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. SwissProt
Match: NYC1_ARATH (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Arabidopsis thaliana GN=NYC1 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.038e-45
Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = -2

Query:  852 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIIL-SSTGNNLPGT 1157
            LVPRMRVVKG+GKA+NYLTPPRILLA+VT+WLRRGRWFDD+GRALYAAEADRLRNWAENR R S TDAMEMYTENTWVSVFSLSVVCAFIIL S+T ++ PGT
Sbjct:  394 LVPRMRVVKGSGKAVNYLTPPRILLAIVTSWLRRGRWFDDQGRALYAAEADRLRNWAENRTRLSLTDAMEMYTENTWVSVFSLSVVCAFIILQSTTPSSFPGT 496

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TrEMBL
Match: B9ILM8_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_261857 PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 5.055e-49
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = -2

Query:  852 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGNNLPGT 1157
            LVPRMRVVKGTGKAI+YLTPPRILLALVTAWLRRGRWFDD+GRALYAAEADRLRNWAENRA+FSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTG+  PGT
Sbjct:  335 LVPRMRVVKGTGKAISYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRLRNWAENRAQFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSTFPGT 436

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TrEMBL
Match: B9RKQ4_RICCO (Short-chain dehydrogenase, putative OS=Ricinus communis GN=RCOM_1052710 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 8.622e-49
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = -2

Query:  852 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGNNLPGT 1157
            LVPRMRVVKG+GKAINYLTPPRILLALVTAWLR+GRWFDD+GRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSST N  PGT
Sbjct:  416 LVPRMRVVKGSGKAINYLTPPRILLALVTAWLRQGRWFDDQGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTSNPFPGT 517

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TrEMBL
Match: C5XK97_SORBI (Putative uncharacterized protein Sb03g001100 OS=Sorghum bicolor GN=Sb03g001100 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.279e-48
Identity = 94/102 (92.16%), Postives = 100/102 (98.04%), Query Frame = -2

Query:  852 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGNNLPGT 1157
            LVPRMRVVKG+GKAINYLTPPRILLALVTAW+RRGRWFDDEGRA+YAAEADR+RNWAE+RARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSS+G  LPGT
Sbjct:  411 LVPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDDEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSSGGPLPGT 512

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TrEMBL
Match: C0PCK2_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.279e-48
Identity = 94/102 (92.16%), Postives = 100/102 (98.04%), Query Frame = -2

Query:  852 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGNNLPGT 1157
            LVPRMRVVKG+GKAINYLTPPRILLALVTAW+RRGRWFDDEGRA+YAAEADR+RNWAE+RARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSS+G  LPGT
Sbjct:  410 LVPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDDEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSSGGPLPGT 511

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TrEMBL
Match: C0P2S8_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.279e-48
Identity = 94/102 (92.16%), Postives = 100/102 (98.04%), Query Frame = -2

Query:  852 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGNNLPGT 1157
            LVPRMRVVKG+GKAINYLTPPRILLALVTAW+RRGRWFDDEGRA+YAAEADR+RNWAE+RARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSS+G  LPGT
Sbjct:   16 LVPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDDEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSSGGPLPGT 117

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TrEMBL
Match: B6SSC2_MAIZE (Oxidoreductase OS=Zea mays PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.279e-48
Identity = 94/102 (92.16%), Postives = 100/102 (98.04%), Query Frame = -2

Query:  852 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGNNLPGT 1157
            LVPRMRVVKG+GKAINYLTPPRILLALVTAW+RRGRWFDDEGRA+YAAEADR+RNWAE+RARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSS+G  LPGT
Sbjct:  408 LVPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDDEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSSGGPLPGT 509

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TrEMBL
Match: D7TBN4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00015384001 PE=4 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 5.588e-48
Identity = 92/102 (90.20%), Postives = 99/102 (97.06%), Query Frame = -2

Query:  852 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGNNLPGT 1157
            LVPRMRVVKGTGKAINYLTPPRILLAL+T WLR+GRWFD++GRALYAAEADR+RNWAENR RFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTG++ PGT
Sbjct:  416 LVPRMRVVKGTGKAINYLTPPRILLALITVWLRQGRWFDEQGRALYAAEADRIRNWAENRTRFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSSFPGT 517

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TrEMBL
Match: B8AAZ1_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00981 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.245e-47
Identity = 93/102 (91.18%), Postives = 100/102 (98.04%), Query Frame = -2

Query:  852 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGNNLPGT 1157
            LVPRMRVVKG+GKAINYLTPPRILLALVTAW+RRGRWFD+EGRA+YAAEADR+RNWAE+RARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSS+G  LPGT
Sbjct:  403 LVPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDEEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSSGGPLPGT 504

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TrEMBL
Match: B5M0Y6_TOBAC (Putative chlorophyll b reductase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.348e-46
Identity = 90/97 (92.78%), Postives = 96/97 (98.97%), Query Frame = -2

Query:  867 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGN 1157
            LVPRMRVVKG+G+AINYLTPPRIL+ALVTAWLRRGRWFDD+GRALYAAEADRLRNWAENR RFSFTDAMEMYTENTW+SVFSLSVVCAFIILSSTG+
Sbjct:  409 LVPRMRVVKGSGRAINYLTPPRILIALVTAWLRRGRWFDDQGRALYAAEADRLRNWAENRTRFSFTDAMEMYTENTWISVFSLSVVCAFIILSSTGS 505

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TrEMBL
Match: Q6J9F3_9LILI (Putative uncharacterized protein (Fragment) OS=Xerophyta humilis PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 6.831e-46
Identity = 90/102 (88.24%), Postives = 99/102 (97.06%), Query Frame = -2

Query:  852 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGNNLPGT 1157
            LVPRMRVVKG+G+AI+YLTPPRILLALVTAWLRRGRWFDD+GRALYAAEADRLRNWAE+RARFSFTDAMEMYT++TWVSVFSLSVVCAFIILS+TG + P T
Sbjct:  157 LVPRMRVVKGSGRAIDYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRLRNWAESRARFSFTDAMEMYTDSTWVSVFSLSVVCAFIILSTTGGSFPHT 258

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TAIR peptide
Match: AT4G13250.2 (| Symbols: NYC1 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:7684417-7686691 REVERSE LENGTH=494)

HSP 1 Score: 184.496 bits (467), Expect = 9.884e-47
Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = -2

Query:  852 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIIL-SSTGNNLPGT 1157
            LVPRMRVVKG+GKA+NYLTPPRILLA+VT+WLRRGRWFDD+GRALYAAEADRLRNWAENR R S TDAMEMYTENTWVSVFSLSVVCAFIIL S+T ++ PGT
Sbjct:  392 LVPRMRVVKGSGKAVNYLTPPRILLAIVTSWLRRGRWFDDQGRALYAAEADRLRNWAENRTRLSLTDAMEMYTENTWVSVFSLSVVCAFIILQSTTPSSFPGT 494

[Close]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TAIR peptide
Match: AT4G13250.1 (| Symbols: NYC1 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:7684417-7686691 REVERSE LENGTH=496)

HSP 1 Score: 184.496 bits (467), Expect = 9.884e-47
Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = -2

Query:  852 LVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIIL-SSTGNNLPGT 1157
            LVPRMRVVKG+GKA+NYLTPPRILLA+VT+WLRRGRWFDD+GRALYAAEADRLRNWAENR R S TDAMEMYTENTWVSVFSLSVVCAFIIL S+T ++ PGT
Sbjct:  394 LVPRMRVVKGSGKAVNYLTPPRILLAIVTSWLRRGRWFDDQGRALYAAEADRLRNWAENRTRLSLTDAMEMYTENTWVSVFSLSVVCAFIILQSTTPSSFPGT 496

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig2614 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig2614 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig2614 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig2614 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 2


Match Name	E-value	Identity	Description
NYC1_ORYSJ	7.679e-49	91.18	Probable chlorophyll(ide) b reductase NYC1, chloro...	[more]
NYC1_ARATH	1.038e-45	86.41	Probable chlorophyll(ide) b reductase NYC1, chloro...	[more]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9ILM8_POPTR	5.055e-49	94.12	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
B9RKQ4_RICCO	8.622e-49	94.12	Short-chain dehydrogenase, putative OS=Ricinus com...	[more]
C5XK97_SORBI	4.279e-48	92.16	Putative uncharacterized protein Sb03g001100 OS=So...	[more]
C0PCK2_MAIZE	4.279e-48	92.16	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
C0P2S8_MAIZE	4.279e-48	92.16	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
B6SSC2_MAIZE	4.279e-48	92.16	Oxidoreductase OS=Zea mays PE=2 SV=1	[more]
D7TBN4_VITVI	5.588e-48	90.20	Whole genome shotgun sequence of line PN40024, sca...	[more]
B8AAZ1_ORYSI	1.245e-47	91.18	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B5M0Y6_TOBAC	2.348e-46	92.78	Putative chlorophyll b reductase OS=Nicotiana taba...	[more]
Q6J9F3_9LILI	6.831e-46	88.24	Putative uncharacterized protein (Fragment) OS=Xer...	[more]

BLAST of Cicer_arietinum_v1_Contig2614 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT4G13250.2	9.884e-47	86.41	\| Symbols: NYC1 \| NAD(P)-binding Rossmann-fold sup...	[more]
AT4G13250.1	9.884e-47	86.41	\| Symbols: NYC1 \| NAD(P)-binding Rossmann-fold sup...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 66..80 score
None	No IPR available	SEG	seg	seg	coord: 41..48 score
None	No IPR available	SEG	seg	seg	coord: 29..39 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig2614 ID=Cicer_arietinum_v1_Contig2614; Name=Cicer_arietinum_v1_Contig2614; organism=Cicer arietinum; type=contig; length=1158bp
GGGAGAGGATTTGTTATAGTGTAGGAAAGAGGGGAGGAGAAGGAGAGGGT
TTTATTGCAAAAGAGGAAAAAATAAAAGGGCTGGTGAAAAAAGAGCGAGG
AAAGAGGAATTAGTGAAAGTTTAAGGACTACACACTCATAGAGGGGAAAC
GCCCCAGGGGGAAGTTGAATACCAGTTTAAGTAATTTCGAAGAAGTTATA
ATAATTTTGGGAGGGGGAATTTGGAGGGAGAAGAATATAAATATTTCGCC
CGCAGAGGAAAACAGGGGGTAAAACGTGAAGGTATAGAAGCAAGGATGGT
TTGGGGATGAACCGAATAAGAGAGTTATGCAAATAAAAGACTAAACAAAC
CGGTTAAAGGAAGTTTTCCCATAGAGGTGTGAGAAGACAAGGAAACGGAG
AGATGCAAGTGGGGTAATAGACCGGGGTTTAAACGACAGAAAGAGCTTTT
ATTTATTGTTTTTTAGGTGGAATTTTTAATTAAGTTAAATTTTAATGTAT
AAGAATTGATGGTTTTGATTTTAAATGTTTATTGTTTTTTTTCTTAATAT
TTAGTCATTTGATAAAGTTCATCTTAGTAGTATACACATTTAATAATCTG
GCTATACATTACACATAGTACAAACTAAATATTACTTTGACTATAAGCAT
CTCAATGGGAAATGCTTGATTAACATGAAGTCTATACATGGAATTCACAA
ACACATACCACTAAAGATTACACACTACTACAAAATGTTTGAACGGAGTT
CTAGGTGAAAATGTTGAGAAAAAAATCTGATCCACCTTGTTTTATGGTTT
AGATTTATTCTATTGTTTTGATGATTTCAAATTGGCATCAAGGTATCAAG
AAGTTCCAGGCAAATTGTTTCCAGTGCTAGAAAGTATAATGAAAGCACAA
ACAACTGAAAGTGAGAAGACTGATACCCAAGTGTTTTCTGTGTACATTTC
CATTGCATCGGTGAAGGAAAACCTCGCTCGATTTTCCGCCCAGTTTCGAA
GTCGGTCTGCTTCGGCTGCATACAATGCTCTCCCCTCATCGTCGAACCAG
CGACCTCGTCGTAACCAAGCAGTGACCAATGCAAGTAAGATTCTAGGTGG
AGTCAAGTAATTGATGGCCTTGCCTGTTCCCTTGACAACTCGCATCCGTG
GAACTAAT

Search form

Cicer_arietinum_v1_Contig2614