Cicer_arietinum_v1_Contig263

Contig Overview
NameCicer_arietinum_v1_Contig263
Unique NameCicer_arietinum_v1_Contig263
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length763
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
HO064506ESTHO064506:1..737 +Cicer arietinum unigene v1n/a
HO064632ESTHO064632:261..763 -Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
HO064506HO064506Cicer arietinumEST
HO064632HO064632Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TrEMBL
Match: C6TJA4_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.151e-18
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = -2 
Query:  289 PGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 441
            P GFGFVQYVDPADAADAKYHMDGQ+LL RELTV+FAEENRKKP EMR RE
Sbjct:   81 PRGFGFVQYVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPTEMRTRE 131
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TrEMBL
Match: C6TK79_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.728e-18
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = -2 
Query:  289 PGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 441
            P GFGFVQYVDPADAADAKYHMDG+ILL RE+TV+FAEENRKKP EMRARE
Sbjct:   80 PRGFGFVQYVDPADAADAKYHMDGRILLGREITVVFAEENRKKPAEMRARE 130
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TrEMBL
Match: B9T013_RICCO (Serine/arginine rich splicing factor, putative OS=Ricinus communis GN=RCOM_0036490 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.148e-17
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = -2 
Query:  289 PGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 441
            P GFGFVQYVDPADAADAK+HMDG+ILL RELTV+FAEENRKKP EMRARE
Sbjct:   80 PRGFGFVQYVDPADAADAKHHMDGEILLGRELTVVFAEENRKKPAEMRARE 130
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TrEMBL
Match: C6T8C8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.499e-17
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = -2 
Query:  289 PGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 441
            P GFGFVQ+VDPADAADAKYHMDGQ+LL RELTV+FAEENRKKP EMR RE
Sbjct:   81 PRGFGFVQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPTEMRTRE 131
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TrEMBL
Match: B8A3R9_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.557e-17
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = -2 
Query:  289 LCSRGPGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 456
            + +R P GFGFVQY DPADAADAKY+MDGQ++L R++TV+FAEENRKKPQEMRAR+
Sbjct:    1 MSARDPRGFGFVQYYDPADAADAKYYMDGQVVLGRQITVVFAEENRKKPQEMRARD 56
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TrEMBL
Match: Q7Y171_ORYSJ (Putative splicing factor OS=Oryza sativa subsp. japonica GN=OSJNBa0090L05.13 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.361e-17
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = -2 
Query:  289 PGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 441
            P GFGF+QY DP DAADAKYHMDGQILL RE+TV+FAEENRKKP EMRARE
Sbjct:   77 PRGFGFIQYYDPEDAADAKYHMDGQILLGREVTVVFAEENRKKPSEMRARE 127
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TrEMBL
Match: Q10KQ7_ORYSJ (RNA recognition motif family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g25770 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.361e-17
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = -2 
Query:  289 PGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 441
            P GFGF+QY DP DAADAKYHMDGQILL RE+TV+FAEENRKKP EMRARE
Sbjct:   77 PRGFGFIQYYDPEDAADAKYHMDGQILLGREVTVVFAEENRKKPSEMRARE 127
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TrEMBL
Match: C7J0R1_ORYSJ (Os03g0374575 protein OS=Oryza sativa subsp. japonica GN=Os03g0374575 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.361e-17
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = -2 
Query:  289 PGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 441
            P GFGF+QY DP DAADAKYHMDGQILL RE+TV+FAEENRKKP EMRARE
Sbjct:   84 PRGFGFIQYYDPEDAADAKYHMDGQILLGREVTVVFAEENRKKPSEMRARE 134
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TrEMBL
Match: B8AQ95_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11773 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.361e-17
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = -2 
Query:  289 PGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 441
            P GFGF+QY DP DAADAKYHMDGQILL RE+TV+FAEENRKKP EMRARE
Sbjct:   77 PRGFGFIQYYDPEDAADAKYHMDGQILLGREVTVVFAEENRKKPSEMRARE 127
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TrEMBL
Match: C5WYN3_SORBI (Putative uncharacterized protein Sb01g034200 OS=Sorghum bicolor GN=Sb01g034200 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.695e-17
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = -2 
Query:  289 DLCSRGPGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 459
            D  +R P GFGF+QY DP DA+DAKYHMDGQ+LL RE+TV+FAEENRKKP +MRARE
Sbjct:   71 DYYTREPKGFGFIQYFDPEDASDAKYHMDGQMLLGREITVVFAEENRKKPSDMRARE 127
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TAIR peptide
Match: AT1G55310.3 (| Symbols: SR33, SCL33, At-SCL33 | SC35-like splicing factor 33 | chr1:20630676-20632695 FORWARD LENGTH=300)

HSP 1 Score: 97.4413 bits (241), Expect = 8.874e-21
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = -2 
Query:  289 VYISRHLYLVS*QHLDLC--SRGPGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 504
            +Y+ R  Y  S    D C  SR P GFGFVQ++DPADAADAK+HMDG +LL RELTV+FAEENRKKP EMRARE
Sbjct:   65 IYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARE 138
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TAIR peptide
Match: AT1G55310.2 (| Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like splicing factor 33 | chr1:20630676-20632567 FORWARD LENGTH=220)

HSP 1 Score: 90.1225 bits (222), Expect = 1.417e-18
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = -2 
Query:  289 DLCSRGPGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 459
            D  +  P GFGFVQ++DPADAADAK+HMDG +LL RELTV+FAEENRKKP EMRARE
Sbjct:   70 DYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARE 126
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TAIR peptide
Match: AT1G55310.1 (| Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like splicing factor 33 | chr1:20630676-20632695 FORWARD LENGTH=287)

HSP 1 Score: 90.1225 bits (222), Expect = 1.417e-18
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = -2 
Query:  289 DLCSRGPGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 459
            D  +  P GFGFVQ++DPADAADAK+HMDG +LL RELTV+FAEENRKKP EMRARE
Sbjct:   70 DYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARE 126
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TAIR peptide
Match: AT3G13570.1 (| Symbols: SCL30A, At-SCL30A | SC35-like splicing factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262)

HSP 1 Score: 82.4185 bits (202), Expect = 2.954e-16
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = -2 
Query:  289 DLCSRGPGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRARE 459
            D  +  P GFGF+Q++DPADAA+AK+ MDG +LL RELTV+FAEENRKKP EMR R+
Sbjct:   71 DYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPTEMRTRD 127
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TAIR peptide
Match: AT5G18810.1 (| Symbols: SCL28, At-SCL28 | SC35-like splicing factor 28 | chr5:6268925-6271158 REVERSE LENGTH=236)

HSP 1 Score: 55.0694 bits (131), Expect = 5.050e-8
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = -2 
Query:  298 PGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMR 441
            P GFGFV+Y    DAA+A   M+ +++  RE+ ++FAEENRK PQEMR
Sbjct:   87 PRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAEENRKTPQEMR 134
[Close]
BLAST of Cicer_arietinum_v1_Contig263 vs. TAIR peptide
Match: AT3G55460.1 (| Symbols: SCL30, At-SCL30 | SC35-like splicing factor 30 | chr3:20561024-20563502 FORWARD LENGTH=262)

HSP 1 Score: 53.1434 bits (126), Expect = 1.919e-7
Identity = 30/73 (41.10%), Postives = 42/73 (57.53%), Query Frame = -2 
Query:  292 RCVYISRHLYLVS*QHLDLCSRGPGGFGFVQYVDPADAADAKYHMDGQILLVRELTVLFAEENRKKPQEMRAR 510
            R VYI R  Y          S  P GF FV++VD  DA +A+  M+ +    RE+TV+ A E+RK+P+EMR +
Sbjct:   74 RDVYIPRDYY----------SGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESRKRPEEMRVK 136
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig263 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6TJA4_SOYBN5.151e-1888.24Putative uncharacterized protein (Fragment) OS=Gly... [more]
C6TK79_SOYBN6.728e-1888.24Putative uncharacterized protein OS=Glycine max PE... [more]
B9T013_RICCO1.148e-1788.24Serine/arginine rich splicing factor, putative OS=... [more]
C6T8C8_SOYBN1.499e-1786.27Putative uncharacterized protein OS=Glycine max PE... [more]
B8A3R9_MAIZE2.557e-1775.00Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
Q7Y171_ORYSJ4.361e-1784.31Putative splicing factor OS=Oryza sativa subsp. ja... [more]
Q10KQ7_ORYSJ4.361e-1784.31RNA recognition motif family protein, expressed OS... [more]
C7J0R1_ORYSJ4.361e-1784.31Os03g0374575 protein OS=Oryza sativa subsp. japoni... [more]
B8AQ95_ORYSI4.361e-1784.31Putative uncharacterized protein OS=Oryza sativa s... [more]
C5WYN3_SORBI5.695e-1773.68Putative uncharacterized protein Sb01g034200 OS=So... [more]
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BLAST of Cicer_arietinum_v1_Contig263 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 6
Match NameE-valueIdentityDescription
AT1G55310.38.874e-2167.57| Symbols: SR33, SCL33, At-SCL33 | SC35-like splic... [more]
AT1G55310.21.417e-1875.44| Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-l... [more]
AT1G55310.11.417e-1875.44| Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-l... [more]
AT3G13570.12.954e-1666.67| Symbols: SCL30A, At-SCL30A | SC35-like splicing ... [more]
AT5G18810.15.050e-854.17| Symbols: SCL28, At-SCL28 | SC35-like splicing fa... [more]
AT3G55460.11.919e-741.10| Symbols: SCL30, At-SCL30 | SC35-like splicing fa... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 71..85
score
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 7..147
score: 7.9
NoneNo IPR availableSEGsegsegcoord: 61..78
score: NAcoord: 84..109
score: NAcoord: 111..149
score
NoneNo IPR availableSUPERFAMILY54928RNA-binding domain, RBDcoord: 7..80
score: 1.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 10..41
score: 0.0
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 9..72
score: 1.3

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig263 ID=Cicer_arietinum_v1_Contig263; Name=Cicer_arietinum_v1_Contig263; organism=Cicer arietinum; type=contig; length=763bp
TTCGAGCGGCCGCCCGGGCAGGTACCCTGGACTACGGCTAATGCTCCTGC
TGTAACTCCTACCTCGACTGGGGCCTCTTGATGCATAAGGCGATCTACTA
TAAGGGGATCTAGAGTATGATTCCCTCCTATACCTTCCATCTCTCGGTGA
GATTGACCTGGAATATCTGGAATATTGCCTTCGTCCTGGAGAAGGTGAAT
AGTCTGGACTAGGAGAATAGGTGCGTGCATGGTGTGGTGAGCGAGAACGA
CGACGAGGAGATCGTCTATAATCATATGACCTCCCACGTTCTCTTGCTCT
CATTTCTTGAGGTTTCTTTCTGTTTTCTTCAGCAAACAAAACAGTTAACT
CGCGAACAAGAAGAATTTGACCATCCATGTGATATTTTGCATCTGCAGCA
TCAGCTGGGTCCACATACTGAACAAATCCAAATCCCCCCGGCCCCCTGGA
ACATAAATCCAAATGCTGTTAAGAGACGAGATATAAATGGCGTGATATAT
AAACACACCTGCATACTGAAGTAGTGTACGATACACATATTCGATATCCA
CAAACATGATCCTGTCTCCAAACTATCACAAGCATTACTCTCAACTCTTG
ACAGAATTCAATATTAAACACCACACAATGCTAACCTTGTAGGTGCCAAA
ATATTGAGATGAAAATCTTCAAGACTTGAACTTCTTCTCAATGAATTCAA
GACTTGAACTTCTTACTACTTCATTCTTGTCTTCAACACAGTACCTCGGC
CGCGACCACGCTA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf