Cicer_arietinum_v1_Contig2688

Contig Overview


Name	Cicer_arietinum_v1_Contig2688
Unique Name	Cicer_arietinum_v1_Contig2688
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	527

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GR390767	EST	GR390767:1..524 +
HO067862	EST	HO067862:146..527 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR390767	GR390767	Cicer arietinum	EST
HO067862	HO067862	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig2688 vs. TrEMBL
Match: C6T2H8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.456e-75
Identity = 126/156 (80.77%), Postives = 133/156 (85.26%), Query Frame = 3

Query:   54 MGSSKXXXXXXXXXXXXXPIAAKGDIVDDVLGKVCEEVECGKGSCVVNTSYPLNFICECQSGWKRTQDEDDDLYATSFLPCVIPQCSLNYGCQPAPPPVPEKSFPHNFSAFDPCYWAYCGEGKCSKNRTHTHICECNPNYYNLLNISVFPCYSECT 521
            MGSSK             P+AAKGD + D   KVCEEVECGKGSCVVNTSYPLNF+CEC SGWKRTQD+DD+ YATSFLPCVIP+CSLNYGCQPAPPPVPEKSFPHNFSAFDPCYWAYCGEG C+KNRTHTH CEC PNYYNLLNISVFPCYSECT
Sbjct:    1 MGSSKLLGIMAMLFIVLLPMAAKGDNITDFFDKVCEEVECGKGSCVVNTSYPLNFVCECDSGWKRTQDDDDE-YATSFLPCVIPECSLNYGCQPAPPPVPEKSFPHNFSAFDPCYWAYCGEGTCTKNRTHTHRCECQPNYYNLLNISVFPCYSECT 155

[Close]

BLAST of Cicer_arietinum_v1_Contig2688 vs. TrEMBL
Match: B9I5E4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_571022 PE=4 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.381e-48
Identity = 84/143 (58.74%), Postives = 106/143 (74.13%), Query Frame = 3

Query:  108 PIAAKGDIVDDVLG---KVCEEVECGKGSCVVNTSYPLNFICECQSGWKRTQDEDDDLYAT-SFLPCVIPQCSLNYG-CQPAPPPVPEKSFPHNFSAFDPCYWAYCGEGKCSKNRTHTHICECNPNYYNLLNISVFPCYSECT 521
            P+ A  DI  ++     ++C+EV+CGKG+CV + SYPL++ CECQ+GWK+TQ +DDD+     FLPCVIP C+L YG CQPAPPPVP+K  PHN S FDPCYW YCGEG+C+ N T+ H C CNP + NLLNIS +PCY  CT
Sbjct:   18 PMVAMADIDGNLTAFYDRLCKEVDCGKGTCVGDKSYPLSYKCECQAGWKQTQYDDDDVDDEHKFLPCVIPNCTLKYGTCQPAPPPVPQKEAPHNSSFFDPCYWMYCGEGQCTNNGTYRHTCTCNPGFVNLLNISYYPCYGACT 160

[Close]

BLAST of Cicer_arietinum_v1_Contig2688 vs. TrEMBL
Match: D7TUL5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_30.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00021829001 PE=4 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.868e-44
Identity = 78/141 (55.32%), Postives = 99/141 (70.21%), Query Frame = 3

Query:  108 PIAAKGD----IVDDVLGKVCEEVECGKGSCVVNTSYPLNFICECQSGWKRTQDEDDDLYATSFLPCVIPQCSLNYGCQPAPPPVPEKSFPHNFSAFDPCYWAYCGEGKCSKNRTHTHICECNPNYYNLLNISVFPCYSEC 518
            P++A GD     +   L  +C+EVECGKG+C  +  Y  NFICEC SGWKRT+ +++D     +LPCVIP C+L+Y C  AP P P  + PHN SAFDPCYW YCGEGKC+++  + + CECN  Y NLLNISV+PCYSEC
Sbjct:   18 PLSAMGDDWSPALSPFLDNLCDEVECGKGTCKASLEYKFNFICECDSGWKRTRGDNED--GLKYLPCVIPNCTLDYSCMTAPSPAP--AVPHNESAFDPCYWMYCGEGKCTRSSAYGYKCECNSGYQNLLNISVYPCYSEC 154

[Close]

BLAST of Cicer_arietinum_v1_Contig2688 vs. TrEMBL
Match: B9REQ5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1427790 PE=4 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.595e-40
Identity = 70/128 (54.69%), Postives = 90/128 (70.31%), Query Frame = 3

Query:  141 VLGKVCEEVECGKGSCVVNTSYPLNFICECQSGWKRTQDEDDDLYATSFLPCVIPQCSLNY-GCQPAPPPVPEKSFPHNFSAFDPCYWAYCGEGKCSKNRTHTHICECNPNYYNLLNISVFPCYSECT 521
            +L  +C EVECGKG+C  +   PL ++CEC+SGW R+ D D +     FLPCV P+C+LNY GCQPAPP  PEK+ P N S +DPCYW +CGEG C+KN T+ H+C C   + NLL++  FPCYS CT
Sbjct:   30 ILDAICNEVECGKGTCKGDILKPLGYVCECESGWARSPDADVN-DTLQFLPCVYPKCTLNYDGCQPAPPTPPEKTVPLNSSFYDPCYWMFCGEGTCTKNSTYNHLCTCKSGFSNLLDVPYFPCYSPCT 156

[Close]

BLAST of Cicer_arietinum_v1_Contig2688 vs. TrEMBL
Match: D7T731_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_20.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00018031001 PE=4 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.333e-36
Identity = 67/131 (51.15%), Postives = 82/131 (62.60%), Query Frame = 3

Query:  129 IVDDVLGKVCEEVECGKGSCVVNTSYPLNFICECQSGWKRTQDEDDDLYATSFLPCVIPQCSLNYGCQPAPPPVPEKSFPHNFSAFDPCYWAYCGEGKCSKNRTHTHICECNPNYYNLLNISVFPCYSECT 521
            ++  +  +VC+EVECGKG+C  +   PL F CEC  GW +T+   DD     FLPCVIP C+L+Y C+ AP PV EK    N S FDPC W  CG G C+K    TH CEC   YYNLLNI+ FPC  EC+
Sbjct:   29 LLSPIFDEVCKEVECGKGTCKPSNDSPLYFACECNPGWMQTRPAHDD--HLKFLPCVIPNCTLDYSCKEAPSPVQEKENRANLSLFDPCRWTDCGGGSCNKTSKFTHTCECREGYYNLLNITTFPCLRECS 157

[Close]

BLAST of Cicer_arietinum_v1_Contig2688 vs. TrEMBL
Match: B9RTK8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0911130 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.513e-35
Identity = 60/130 (46.15%), Postives = 83/130 (63.85%), Query Frame = 3

Query:  129 IVDDVLGKVCEEVECGKGSCVVNTSYPLNFICECQSGWKRTQDEDDDLYATSFLPCVIPQCSLNYGCQPAPPPVPEKSFPHNFSAFDPCYWAYCGEGKCSKNRTHTHICECNPNYYNLLNISVFPCYSEC 518
            ++  +    C++VECGKG+C  +++    + CEC  GWK+T+ + DD     FLPCV+P C+++Y C  AP P+ +KS   N S FDPC+W  CG G C+K    T+ CEC   YYNLLNIS FPC+ EC
Sbjct:   30 LLSPIFDDACKKVECGKGTCKASSNSSFFYECECDPGWKQTRSDHDD--TLKFLPCVVPNCTMDYSCVAAPSPIQDKSSKSNASVFDPCFWTDCGGGSCNKTSPFTYSCECTEGYYNLLNISAFPCFKEC 157

[Close]

BLAST of Cicer_arietinum_v1_Contig2688 vs. TrEMBL
Match: B9HK98_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_657197 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.240e-33
Identity = 65/142 (45.77%), Postives = 88/142 (61.97%), Query Frame = 3

Query:  108 PIAAKGDIVDDVLGK----VCEEVECGKGSCVVNTSYPLNFICECQSGWKRTQ-DEDDDLYATSFLPCVIPQCSLNYGCQPAPPPVPEKSFPHNFSAFDPCYWAYCGEGKCSKNRTHTHICECNPNYYNLLNISVFPCYSEC 518
            P+ A  D++  +L      VC++VECGKG+C  + +    + CEC  GW +T+ D+DD L    FLPCV+P C++N+ C  AP PV EK+   N S FDPC+WA CG G C+K    T+ C C   Y NLLN+S FPCY +C
Sbjct:   16 PLIASSDLLSPLLSPIFDDVCKKVECGKGTCKPSDNSTWFYECECDPGWTQTRFDQDDHL---QFLPCVVPNCTVNFSCTAAPSPVQEKASRDNQSIFDPCFWADCGGGSCNKTSQLTYSCACAEGYSNLLNVSTFPCYKDC 154

[Close]

BLAST of Cicer_arietinum_v1_Contig2688 vs. TrEMBL
Match: B9HUR5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_769268 PE=4 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.291e-31
Identity = 61/130 (46.92%), Postives = 77/130 (59.23%), Query Frame = 3

Query:  129 IVDDVLGKVCEEVECGKGSCVVNTSYPLNFICECQSGWKRTQDEDDDLYATSFLPCVIPQCSLNYGCQPAPPPVPEKSFPHNFSAFDPCYWAYCGEGKCSKNRTHTHICECNPNYYNLLNISVFPCYSEC 518
            ++  V   VC++VECGKG+C  + +    F CEC  GWK+T  + DD     FLPC++P C+LN  C  AP PV EK+   N S FD C W  CG G C+K  T T+ C C   Y NLLN S FPCY +C
Sbjct:   30 LLSPVFDDVCKKVECGKGTCKPSDNSTWFFECECDPGWKQTSSDHDD--HLKFLPCIVPDCTLNSSCMAAPSPVQEKARKDNESIFDSCSWTDCGGGSCNKTSTFTYSCACAEGYNNLLNASAFPCYKDC 157

[Close]

BLAST of Cicer_arietinum_v1_Contig2688 vs. TrEMBL
Match: B9MZF0_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_680287 PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.208e-29
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 3

Query:  285 FLPCVIPQCSLNYG-CQPAPPPVPEKSFPHNFSAFDPCYWAYCGEGKCSKNRTHTHICECNPNYYNLLNISVFPCYSECT 521
            FLPCVIP C++NYG CQPAPPP P+K  P N S FDPCYW YCGEG C+ N T+ + C CNP + NLLNIS +PCYS+CT
Sbjct:   11 FLPCVIPNCTINYGSCQPAPPPAPQKEVPQNGSIFDPCYWMYCGEGTCTNNGTYRYNCSCNPGFSNLLNISYYPCYSQCT 90

[Close]

BLAST of Cicer_arietinum_v1_Contig2688 vs. TrEMBL
Match: B8ANV8_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_10119 PE=4 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.021e-25
Identity = 62/154 (40.26%), Postives = 84/154 (54.55%), Query Frame = 3

Query:  111 IAAKGDIVDD-----------VLGKVCEEVECGKGSCVVNTSYPLNFICECQSGWKRTQDEDDDLYATSFLPCVIPQCSLNYGCQ----PAPPPVPEKSFPHNFSA-FDPCYWAYCGEGKCSKNRTH-THICECNPNYYNLLNISVFPCYSECT 521
            +A +  + DD           V+G +C+ V CGKG+C   + +P  + CEC+ GWK+    D      SFLPCVIP CS++  C     PAP P+P    P NFS   DPC  AYCG G   KN T  ++ CEC+  + NLLNI+  PC+  C+
Sbjct:   26 VATRATVADDFFSPLSPLLAPVIGSMCKTVACGKGNCTAASGFP-GYRCECEPGWKQMHVGDQ----ASFLPCVIPNCSIDRACSNTIAPAPAPLPS---PKNFSLPTDPCQLAYCGSGGTCKNGTGLSYHCECSEGFSNLLNITTMPCFQNCS 171

[Close]

BLAST of Cicer_arietinum_v1_Contig2688 vs. TAIR peptide
Match: AT4G14746.1 (| Symbols: | CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:8462720-8464326 REVERSE LENGTH=212)

HSP 1 Score: 108.612 bits (270), Expect = 2.024e-24
Identity = 48/128 (37.50%), Postives = 65/128 (50.78%), Query Frame = 3

Query:  141 VLGKVCEEVECGKGSCVVNTSYPLNFICECQSGWKRTQDEDDDLYATSFLPCVIPQCSLNYGCQPAPPPVPEKSFPHN--FSAFDPCYWAYCGEGKCSKNRTHTHICECNPNYYNLLNISVFPCYSEC 518
            V   +C+EVECGKG C   ++    + CEC+ GWK+            FLPC+ P C+ +  C  A  P   K  P +   S FDPC W  CG G C+ +    + C C   Y NL+NI+ FPC  +C
Sbjct:   34 VYDNICKEVECGKGKCKAPSNTTFMYECECEDGWKQFDQH------LKFLPCITPNCTFDLTCGEAASPAQPKPPPKDNITSFFDPCQWMDCGGGLCNSSMPFQYSCNCREGYSNLMNITTFPCLKQC 155

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig2688 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig2688 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig2688 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6T2H8_SOYBN	1.456e-75	80.77	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9I5E4_POPTR	3.381e-48	58.74	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7TUL5_VITVI	3.868e-44	55.32	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9REQ5_RICCO	2.595e-40	54.69	Putative uncharacterized protein OS=Ricinus commun...	[more]
D7T731_VITVI	1.333e-36	51.15	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9RTK8_RICCO	2.513e-35	46.15	Putative uncharacterized protein OS=Ricinus commun...	[more]
B9HK98_POPTR	5.240e-33	45.77	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
B9HUR5_POPTR	1.291e-31	46.92	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9MZF0_POPTR	1.208e-29	66.25	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
B8ANV8_ORYSI	4.021e-25	40.26	Putative uncharacterized protein OS=Oryza sativa s...	[more]

BLAST of Cicer_arietinum_v1_Contig2688 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G14746.1	2.024e-24	37.50	\| Symbols: \| CONTAINS InterPro DOMAIN/s: EGF-like...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 51..62 score
None	No IPR available	SEG	seg	seg	coord: 9..21 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig2688 ID=Cicer_arietinum_v1_Contig2688; Name=Cicer_arietinum_v1_Contig2688; organism=Cicer arietinum; type=contig; length=527bp
TCCTTTTCCTTGCTTCCCAAGTCTCTGCTATTGCCTATTAGTGACATTAC
CAAATGGGTTCCTCCAAGTTGTTGGGCCTTATAGCCACACTTCTCTTGGT
ACTTTTGCCCATAGCTGCCAAAGGGGATATTGTTGATGATGTCCTTGGAA
AAGTTTGTGAAGAAGTAGAATGTGGGAAAGGAAGCTGCGTGGTGAATACA
AGTTACCCTTTGAACTTCATCTGTGAATGCCAATCTGGATGGAAACGAAC
CCAAGATGAGGATGATGATTTATATGCCACTAGCTTTCTTCCATGTGTCA
TTCCCCAATGTAGCCTGAATTATGGTTGTCAGCCAGCACCTCCTCCAGTT
CCAGAGAAGAGTTTCCCTCACAACTTTTCAGCTTTTGATCCTTGCTATTG
GGCATACTGTGGAGAAGGTAAATGCAGCAAGAACAGGACACATACACACA
TATGTGAATGCAACCCCAATTATTATAATCTTCTCAATATCTCTGTTTTC
CCTTGTTACAGTGAATGTACCTGCCCG

Search form

Cicer_arietinum_v1_Contig2688