Cicer_arietinum_v1_Contig279

Contig Overview


Name	Cicer_arietinum_v1_Contig279
Unique Name	Cicer_arietinum_v1_Contig279
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	413

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
HO064375	EST	HO064375:1..413 -
HO063206	EST	HO063206:4..401 +
HO064260	EST	HO064260:20..392 -
HO064003	EST	HO064003:4..401 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
HO064375	HO064375	Cicer arietinum	EST
HO063206	HO063206	Cicer arietinum	EST
HO064260	HO064260	Cicer arietinum	EST
HO064003	HO064003	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig279 vs. SwissProt
Match: FBK28_ARATH (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.637e-15
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = -2

Query:  200 VPLTGSSSVGFRFGILNGKLLLFSMKEDPTYRTLLYDPNAAVGSEWETIDIRPSGLCLCSVTTKA 394
            +PL+GSS  GF+FG L+GKLLLFS +E+    TLLYDP+A+ G++W+T +I+ SG C+CSVT  A
Sbjct:  312 LPLSGSSRAGFQFGKLSGKLLLFSSQEETGQCTLLYDPDASPGTQWKTSEIKLSGSCVCSVTITA 376

[Close]

BLAST of Cicer_arietinum_v1_Contig279 vs. TrEMBL
Match: D7TAV2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_10.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00010443001 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.876e-23
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = -2

Query:  200 VPLTGSSSVGFRFGILNGKLLLFSMKEDPTYRTLLYDPNAAVGSEWETIDIRPSGLCLCSVTTKA 394
            VPLTGSSS+GFRFGIL GKLLLFS++EDP YRTLLYDP+AA GSEW+T +I+PSG CLCSVT KA
Sbjct:  321 VPLTGSSSIGFRFGILEGKLLLFSLEEDPGYRTLLYDPDAAPGSEWQTSEIKPSGSCLCSVTIKA 385

[Close]

BLAST of Cicer_arietinum_v1_Contig279 vs. TrEMBL
Match: A5BA49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018334 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.876e-23
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = -2

Query:  200 VPLTGSSSVGFRFGILNGKLLLFSMKEDPTYRTLLYDPNAAVGSEWETIDIRPSGLCLCSVTTKA 394
            VPLTGSSS+GFRFGIL GKLLLFS++EDP YRTLLYDP+AA GSEW+T +I+PSG CLCSVT KA
Sbjct:  307 VPLTGSSSIGFRFGILEGKLLLFSLEEDPGYRTLLYDPDAAPGSEWQTSEIKPSGSCLCSVTIKA 371

[Close]

BLAST of Cicer_arietinum_v1_Contig279 vs. TrEMBL
Match: B9HKY9_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTRDRAFT_1085553 PE=4 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.457e-23
Identity = 51/65 (78.46%), Postives = 59/65 (90.77%), Query Frame = -2

Query:  200 VPLTGSSSVGFRFGILNGKLLLFSMKEDPTYRTLLYDPNAAVGSEWETIDIRPSGLCLCSVTTKA 394
            VPLTGSSS+GFRFGIL+GKLLLFS++E+P YRTLLYDPNA+ GSEW T +I+PSG CLCSVT KA
Sbjct:  307 VPLTGSSSIGFRFGILDGKLLLFSLQEEPGYRTLLYDPNASAGSEWCTSEIKPSGCCLCSVTIKA 371

[Close]

BLAST of Cicer_arietinum_v1_Contig279 vs. TrEMBL
Match: B9MWF5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_592319 PE=4 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.029e-21
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = -2

Query:  200 VPLTGSSSVGFRFGILNGKLLLFSMKEDPTYRTLLYDPNAAVGSEWETIDIRPSGLCLCSVTTKA 394
            VPLTGSSS+GFRFGIL+GKLLLFS + +P YRTLLYDP+A+ GSEW+T +I+PSG CLCSVT KA
Sbjct:  317 VPLTGSSSIGFRFGILDGKLLLFSQEMEPGYRTLLYDPDASPGSEWQTSEIKPSGWCLCSVTIKA 381

[Close]

BLAST of Cicer_arietinum_v1_Contig279 vs. TrEMBL
Match: B9RMG2_RICCO (Protein AFR, putative OS=Ricinus communis GN=RCOM_1080740 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.911e-21
Identity = 47/65 (72.31%), Postives = 58/65 (89.23%), Query Frame = -2

Query:  200 VPLTGSSSVGFRFGILNGKLLLFSMKEDPTYRTLLYDPNAAVGSEWETIDIRPSGLCLCSVTTKA 394
            VP+TGSSS+GF+FGIL+GKLLLFS+++ P Y TLLYDPNA+ GSEW+T +I+PSG CLCSVT KA
Sbjct:  327 VPVTGSSSIGFQFGILDGKLLLFSLEKAPDYHTLLYDPNASPGSEWQTSEIKPSGQCLCSVTIKA 391

[Close]

BLAST of Cicer_arietinum_v1_Contig279 vs. TrEMBL
Match: B9HT85_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTRDRAFT_565879 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.643e-19
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = -2

Query:  200 VPLTGSSSVGFRFGILNGKLLLFSMKEDPTYRTLLYDPNAAVGSEWETIDIRPSGLCLCSVTTKA 394
            VPLTG+S + FRFGIL+GKLLLFS++E+P YRTLLYDPNA+ GSEW T +I+PS  CLC VT KA
Sbjct:  321 VPLTGNSIIDFRFGILDGKLLLFSLEEEPGYRTLLYDPNASPGSEWCTSEIKPSARCLCCVTIKA 385

[Close]

BLAST of Cicer_arietinum_v1_Contig279 vs. TrEMBL
Match: C6T0T8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.391e-18
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = -2

Query:  200 VPLTGSSSVGFRFGILNGKLLLFSMKEDPTYRTLLYDPNAAVGSEWETIDIRPSGLCLCSVTTKA 394
            VPLTGSSS+ FR GIL+ KLLLF ++ +  ++TLLYDPNA +GSEW+T DIRP GLCLC VT KA
Sbjct:   71 VPLTGSSSIDFRIGILDEKLLLFPLEAETAFQTLLYDPNATLGSEWQTCDIRPFGLCLCCVTIKA 135

[Close]

BLAST of Cicer_arietinum_v1_Contig279 vs. TrEMBL
Match: Q6K649_ORYSJ (Kelch repeat-containing F-box protein-like OS=Oryza sativa subsp. japonica GN=OJ1003_F04.33 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.178e-17
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = -2

Query:  200 VPLTGSSSVGFRFGILNGKLLLFSMKEDPTYRTLLYDPNAAVGSEWETIDIRPSGLCLCSVTTKA 394
            VPLTGSSS  F FGI +GKLLLFS+ E+P Y+TL+YDP A  GSEW T +++P GLCLCSVT +A
Sbjct:  321 VPLTGSSSTRFCFGIHDGKLLLFSLDEEPCYKTLMYDPAAPTGSEWFTSELKPPGLCLCSVTIRA 385

[Close]

BLAST of Cicer_arietinum_v1_Contig279 vs. TrEMBL
Match: A3A772_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_06846 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.178e-17
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = -2

Query:  200 VPLTGSSSVGFRFGILNGKLLLFSMKEDPTYRTLLYDPNAAVGSEWETIDIRPSGLCLCSVTTKA 394
            VPLTGSSS  F FGI +GKLLLFS+ E+P Y+TL+YDP A  GSEW T +++P GLCLCSVT +A
Sbjct:  300 VPLTGSSSTRFCFGIHDGKLLLFSLDEEPCYKTLMYDPAAPTGSEWFTSELKPPGLCLCSVTIRA 364

[Close]

BLAST of Cicer_arietinum_v1_Contig279 vs. TrEMBL
Match: A2X562_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_07338 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.538e-17
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = -2

Query:  200 VPLTGSSSVGFRFGILNGKLLLFSMKEDPTYRTLLYDPNAAVGSEWETIDIRPSGLCLCSVTTKA 394
            VPLTGSSS  F FGI +GKLLLFS+ E+P Y+TL+YDP A  GSEW T +++P GLCLCSVT +A
Sbjct:  300 VPLTGSSSTRFCFGIHDGKLLLFSLDEEPCYKTLMYDPAAPTGSEWCTSELKPPGLCLCSVTIRA 364

[Close]

BLAST of Cicer_arietinum_v1_Contig279 vs. TAIR peptide
Match: AT1G67480.2 (| Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:25277294-25278529 FORWARD LENGTH=376)

HSP 1 Score: 79.337 bits (194), Expect = 7.728e-16
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = -2

Query:  200 VPLTGSSSVGFRFGILNGKLLLFSMKEDPTYRTLLYDPNAAVGSEWETIDIRPSGLCLCSVTTKA 394
            +PL+GSS  GF+FG L+GKLLLFS +E+    TLLYDP+A+ G++W+T +I+ SG C+CSVT  A
Sbjct:  312 LPLSGSSRAGFQFGKLSGKLLLFSSQEETGQCTLLYDPDASPGTQWKTSEIKLSGSCVCSVTITA 376

[Close]

BLAST of Cicer_arietinum_v1_Contig279 vs. TAIR peptide
Match: AT1G67480.1 (| Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:25277294-25278529 FORWARD LENGTH=376)

HSP 1 Score: 79.337 bits (194), Expect = 7.728e-16
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = -2

Query:  200 VPLTGSSSVGFRFGILNGKLLLFSMKEDPTYRTLLYDPNAAVGSEWETIDIRPSGLCLCSVTTKA 394
            +PL+GSS  GF+FG L+GKLLLFS +E+    TLLYDP+A+ G++W+T +I+ SG C+CSVT  A
Sbjct:  312 LPLSGSSRAGFQFGKLSGKLLLFSSQEETGQCTLLYDPDASPGTQWKTSEIKLSGSCVCSVTITA 376

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig279 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig279 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig279 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig279 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
FBK28_ARATH	6.637e-15	56.92	F-box/kelch-repeat protein At1g67480 OS=Arabidopsi...	[more]

BLAST of Cicer_arietinum_v1_Contig279 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7TAV2_VITVI	1.876e-23	80.00	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5BA49_VITVI	1.876e-23	80.00	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9HKY9_POPTR	5.457e-23	78.46	F-box family protein OS=Populus trichocarpa GN=POP...	[more]
B9MWF5_POPTR	1.029e-21	75.38	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9RMG2_RICCO	3.911e-21	72.31	Protein AFR, putative OS=Ricinus communis GN=RCOM_...	[more]
B9HT85_POPTR	1.643e-19	70.77	F-box family protein OS=Populus trichocarpa GN=POP...	[more]
C6T0T8_SOYBN	1.391e-18	67.69	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q6K649_ORYSJ	1.178e-17	66.15	Kelch repeat-containing F-box protein-like OS=Oryz...	[more]
A3A772_ORYSJ	1.178e-17	66.15	Putative uncharacterized protein OS=Oryza sativa s...	[more]
A2X562_ORYSI	1.538e-17	66.15	Putative uncharacterized protein OS=Oryza sativa s...	[more]

BLAST of Cicer_arietinum_v1_Contig279 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G67480.2	7.728e-16	56.92	\| Symbols: \| Galactose oxidase/kelch repeat super...	[more]
AT1G67480.1	7.728e-16	56.92	\| Symbols: \| Galactose oxidase/kelch repeat super...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 3..16 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig279 ID=Cicer_arietinum_v1_Contig279; Name=Cicer_arietinum_v1_Contig279; organism=Cicer arietinum; type=contig; length=413bp
TTCGAGCGGCCGCCCGGGCAGGTACTGTGAACTCAATCACAGACATAAAA
TAATGTTGCAACCAAAATTGTGGTTACAACTTTTTTTCCAAAACCTTTAG
CAATACAATCATCACAAGTACTAATAAAACAACATAGAACACTAGCTCCA
TTGCCAAATCTATCAAGGTCTCAAGTTCAAAGGCATTGAAACCCTTTCAA
GCCTTGGTTGTTACACTGCACAAACATAAACCAGATGGTCTTATATCAAT
AGTCTCCCACTCCGACCCCACCGCAGCATTCGGATCATACAACAAAGTCC
TATATGTAGGATCTTCCTTCATTGAAAACAGCAAAAGCTTACCATTCAAT
ATCCCAAATCTAAAACCAACACTTGAACTACCTGTCAAAGGTACCTCGGC
CGCGACCACGCTA

Search form

Cicer_arietinum_v1_Contig279