Cicer_arietinum_v1_Contig2836

Contig Overview
NameCicer_arietinum_v1_Contig2836
Unique NameCicer_arietinum_v1_Contig2836
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length496
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
FL512436ESTFL512436:1..496 -
HO062622ESTHO062622:52..493 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FL512436FL512436Cicer arietinumEST
HO062622HO062622Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig2836 vs. TrEMBL
Match: D5LQ68_MEDTR (Nitrate transporter NRT1.1 OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.883e-13
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = -2 
Query:  298 WLKSNLNKGKLDYFYWXXXXXXXXXXXXXXXXAMRHEYKAQHNNIETNDSIEKELVIANGMEEALN 495
            WLKSNL+KGKLDYFYW                +MRH+YK QHNNIE+ND++EKELV+ N ++  ++
Sbjct:  518 WLKSNLDKGKLDYFYWLLAILGVLNFVLFLVLSMRHQYKVQHNNIESNDNVEKELVLVNEVKVGID 583
[Close]
BLAST of Cicer_arietinum_v1_Contig2836 vs. TrEMBL
Match: B7FLX1_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.883e-13
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = -2 
Query:  298 WLKSNLNKGKLDYFYWXXXXXXXXXXXXXXXXAMRHEYKAQHNNIETNDSIEKELVIANGMEEALN 495
            WLKSNL+KGKLDYFYW                +MRH+YK QHNNIE+ND++EKELV+ N ++  ++
Sbjct:  195 WLKSNLDKGKLDYFYWLLAILGVLNFVLFLVLSMRHQYKVQHNNIESNDNVEKELVLVNEVKVGID 260
[Close]
BLAST of Cicer_arietinum_v1_Contig2836 vs. TrEMBL
Match: C6T7P6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.442e-9
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = -2 
Query:  310 WLKSNLNKGKLDYFYWXXXXXXXXXXXXXXXXAMRHEYKAQHNNIETNDSIEKELVIANGME 495
            WL+SNLNKG+LDYFYW                AMRH+YK QH+  + NDS EKELV AN ++
Sbjct:  187 WLRSNLNKGRLDYFYWLLAVLGVQNFIFFLVLAMRHQYKVQHST-KPNDSAEKELVSANDVK 247
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig2836 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 3
Match NameE-valueIdentityDescription
D5LQ68_MEDTR3.883e-1351.52Nitrate transporter NRT1.1 OS=Medicago truncatula ... [more]
B7FLX1_MEDTR3.883e-1351.52Putative uncharacterized protein OS=Medicago trunc... [more]
C6T7P6_SOYBN4.442e-951.61Putative uncharacterized protein OS=Glycine max PE... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11654OLIGOPEPTIDE TRANSPORTER-RELATEDcoord: 1..69
score: 1.3
NoneNo IPR availablePANTHERPTHR11654:SF37OLIGOPEPTIDE TRANSPORTER-RELATEDcoord: 1..69
score: 1.3
NoneNo IPR availableSEGsegsegcoord: 17..33
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig2836 ID=Cicer_arietinum_v1_Contig2836; Name=Cicer_arietinum_v1_Contig2836; organism=Cicer arietinum; type=contig; length=496bp
CAGGTACATAAACAATCCCCTTCTTTAGGAAACAATATTAATCTATGCTA
TAATCCCACAAAATTAACAAACATGGGGCATTATATTTACTTTCTTACAC
ACAATGTATAATGCCAACTTTTTTAAAGAAATCCTTTGAAGACTATATAT
TTTGAGTCTGGATCATCTCCAATTGACTGGATACTTCTACTAAGAGAAAA
AAGACACATAAGATATAATAATACTATTATTAAACTCTACGCGCCTTTCT
TTTTCTACCAGAAGTATCCAACAAATAAAGAGGAATTCATTCCATAGATT
CAATGCTTCTTCCATTCCATTAGCAATCACAAGCTCTTTCTCTATACTGT
CATTAGTCTCAATGTTGTTGTGTTGAGCTTTGTACTCATGCCTCATTGCC
AAGACAAGAAAAAGTACAAAATTCAGCACTCCAAGCACAGCTAGCAACCA
ATAGAAGTAATCTAACTTACCCTTGTTCAAATTACTCTTCAACCAT
back to top