Cicer_arietinum_v1_Contig2866

Contig Overview
NameCicer_arietinum_v1_Contig2866
Unique NameCicer_arietinum_v1_Contig2866
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
FD449544ESTFD449544:1..291 +
FD449524ESTFD449524:71..497 -
FD449499ESTFD449499:12..501 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FD449544FD449544Cicer arietinumEST
FD449524FD449524Cicer arietinumEST
FD449499FD449499Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig2866 vs. TrEMBL
Match: A5BMU0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012579 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.557e-14
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = -2 
Query:  291 VKMXXGEMTTHAETYGLGMHQFSYSQAPSFQHQPQHGPNELRAMQMQQFHSHSSNISTPHXASV*SAH 494
            +K+  GE+ T ++ Y LGMH   Y+Q+  F HQ Q GP+E + +QM QFH   SN+ T H   +  AH
Sbjct:  300 LKIATGEIMTSSDAYNLGMHHVPYTQSSFFSHQSQPGPSESQNIQMPQFHPFPSNMLTHHQPLLGVAH 367

HSP 2 Score: 41.2022 bits (95), Expect = 1.557e-14
Identity = 20/52 (38.46%), Postives = 31/52 (59.62%), Query Frame = -3 
Query:  155 PQFDLPTSYDLSEMLSSDSIGQFQGLDIGHRVSHVLMPDGPSISVNKTHNAF 310
            P   +  S  LS+ML  D +G+ QGLDI  R   ++  +GPSIS +++ + F
Sbjct:  361 PLLGVAHSNALSDMLQQDPLGRLQGLDISSRGPSLVKSEGPSISASESSSTF 412
[Close]
BLAST of Cicer_arietinum_v1_Contig2866 vs. TrEMBL
Match: B9S4E6_RICCO (Transcription factor RF2b, putative OS=Ricinus communis GN=RCOM_0689740 PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 5.198e-11
Identity = 27/68 (39.71%), Postives = 36/68 (52.94%), Query Frame = -2 
Query:  291 VKMXXGEMTTHAETYGLGMHQFSYSQAPSFQHQPQHGPNELRAMQMQQFHSHSSNISTPHXASV*SAH 494
            +K   GEM T  ++Y LGM+   Y+Q+  F  Q Q  P   + MQM QFH   SN+ T H A    +H
Sbjct:  244 LKFATGEMMTPTDSYHLGMNHMPYTQSSFFPPQSQPRPVNTQNMQMPQFHPFQSNMLTSHQAIAAPSH 311

HSP 2 Score: 38.891 bits (89), Expect = 5.198e-11
Identity = 18/41 (43.90%), Postives = 28/41 (68.29%), Query Frame = -3 
Query:  167 SYDLSEMLSSDSIGQFQGLDIGHRVSHVLMPDGPSISVNKT 289
            S+   EML  D +G+ QGLDIG R + ++  +GPSIS +++
Sbjct:  312 SHAFPEMLPLDPLGRLQGLDIGSRSTVLVKSEGPSISASES 352
[Close]
BLAST of Cicer_arietinum_v1_Contig2866 vs. TrEMBL
Match: D7SJI9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024562001 PE=4 SV=1)

HSP 1 Score: 44.2838 bits (103), Expect = 9.776e-9
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = -3 
Query:  155 SYDLSEMLSSDSIGQFQGLDIGHRVSHVLMPDGPSISVNKTHNAF 289
            S  +SE+L +D +G+ QGLDI  R SH++  +GPSIS  ++ + F
Sbjct:  175 SQPISEILQNDPLGRLQGLDISSRGSHLVKSEGPSISACESSSTF 219

HSP 2 Score: 38.891 bits (89), Expect = 9.776e-9
Identity = 20/60 (33.33%), Postives = 32/60 (53.33%), Query Frame = -2 
Query:  315 VKMXXGEMTTHAETYGLGMHQFSYSQAPSFQHQPQHGPNELRAMQMQQFHSHSSNISTPH 494
            +K+  GE+ + +E++ LGM Q  Y+ +       Q GP     MQ+  FH   SN+ST +
Sbjct:  110 LKIATGEIMSPSESFDLGMQQMLYTPSSFLSLPQQIGPAGQPNMQLPPFHHSHSNMSTQY 169
[Close]
BLAST of Cicer_arietinum_v1_Contig2866 vs. TrEMBL
Match: A5AZN7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035032 PE=3 SV=1)

HSP 1 Score: 44.2838 bits (103), Expect = 4.562e-8
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = -3 
Query:  155 SYDLSEMLSSDSIGQFQGLDIGHRVSHVLMPDGPSISVNKTHNAF 289
            S  +SE+L +D +G+ QGLDI  R SH++  +GPSIS  ++ + F
Sbjct:  298 SQPISEILQNDPLGRLQGLDISSRGSHLVKSEGPSISACESSSTF 342

HSP 2 Score: 36.5798 bits (83), Expect = 4.562e-8
Identity = 19/60 (31.67%), Postives = 31/60 (51.67%), Query Frame = -2 
Query:  315 VKMXXGEMTTHAETYGLGMHQFSYSQAPSFQHQPQHGPNELRAMQMQQFHSHSSNISTPH 494
            +K+  GE+ + +E++ LGM    Y+ +       Q GP     MQ+  FH   SN+ST +
Sbjct:  233 LKIATGEIMSPSESFDLGMQXMLYTPSSFLSLPQQIGPAGQPNMQLPPFHHSHSNMSTQY 292
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig2866 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 4
Match NameE-valueIdentityDescription
A5BMU0_VITVI1.557e-1442.65Putative uncharacterized protein OS=Vitis vinifera... [more]
B9S4E6_RICCO5.198e-1139.71Transcription factor RF2b, putative OS=Ricinus com... [more]
D7SJI9_VITVI9.776e-944.44Whole genome shotgun sequence of line PN40024, sca... [more]
A5AZN7_VITVI4.562e-844.44Putative uncharacterized protein OS=Vitis vinifera... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig2866 ID=Cicer_arietinum_v1_Contig2866; Name=Cicer_arietinum_v1_Contig2866; organism=Cicer arietinum; type=contig; length=501bp
TACTTTTTTTAAGATAAGCTAATCCACATACACCCTCAATCAAATAAAGA
ATTGAATAGGAAAACAAAAAAATCAATACCTTTGGGTCTCACTCATGTCA
ATCTATGAACAACCCAATAAACAGGGTGGTGACATGTTAGTCAAATTCGC
ATCAAAAGGCATTGTGGGTTTTGTTAACAGAAATGGAGGGACCGTCAGGC
ATTAGAACATGAGAAACCCGGTGTCCAATGTCCAACCCCTGAAACTGGCC
GATAGAATCACTTGACAACATTTCTGATAAATCATATGAAGTGGGCAGAT
CAAACTGAGGCTNGGTGGGGAGTGGATATGTTAGATGAGTGTGAATGAAA
CTGCTGCATTTGCATAGCCCGAAGTTCGTTTGGCCCATGTTGCGGCTGGT
GCTGGAAGGACGGAGCTTGAGAATATGAAAATTGATGCATTCCCAAACCA
TAGGTTTCAGCATGAGTTGTCATCTCTCCANNANCCATCTTGACCTAACC
T
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