Cicer_arietinum_v1_Contig2900

Contig Overview


Name	Cicer_arietinum_v1_Contig2900
Unique Name	Cicer_arietinum_v1_Contig2900
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	802

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
EH059136	EST	EH059136:6..108 -
GR916109	EST	GR916109:61..446 +
EL585354	EST	EL585354:85..642 +
EL585349	EST	EL585349:85..643 +
FE672105	EST	FE672105:1..686 +
GR404789	EST	GR404789:462..804 -

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
EH059136	EH059136	Cicer arietinum	EST
GR916109	GR916109	Cicer arietinum	EST
EL585354	EL585354	Cicer arietinum	EST
EL585349	EL585349	Cicer arietinum	EST
FE672105	FE672105	Cicer arietinum	EST
GR404789	GR404789	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. SwissProt
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.197e-31
Identity = 74/103 (71.84%), Postives = 83/103 (80.58%), Query Frame = -2

Query:  262 GGMFSVPYDVGG---IPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 561
            G MF  P   GG   +P  D      + IGALAS+L+NA+PEQQRTMLGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR+V
Sbjct:  512 GRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSV 614

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. SwissProt
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 8.476e-24
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = -2

Query:  268 PQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 501
            P  + I  LAS LA ASP++   MLG++LYPLVEQ EP NAAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA+DVLR
Sbjct:  570 PTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLR 647

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. SwissProt
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.088e-22
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = -2

Query:  268 VPYDVGGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 546
            +P D   I  + A L   +PI  L S LA+ASP  +  MLGE LYPLVE+ EP + AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA+DVLR
Sbjct:  555 LPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. SwissProt
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.236e-16
Identity = 40/69 (57.97%), Postives = 56/69 (81.16%), Query Frame = -2

Query:  268 ASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 474
            AS LA+A P++Q+ MLGE LYPL+ ++ P  A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+
Sbjct:  544 ASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQ 612

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. SwissProt
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.981e-16
Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -2

Query:  268 ASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 474
            AS LA+A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. SwissProt
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.981e-16
Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -2

Query:  268 ASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 474
            AS LA+A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. SwissProt
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.505e-16
Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -2

Query:  268 ASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 474
            AS LA+A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. SwissProt
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.505e-16
Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -2

Query:  268 ASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 474
            AS LA+A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. SwissProt
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.505e-16
Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -2

Query:  268 ASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 474
            AS LA+A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. SwissProt
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.110e-15
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = -2

Query:  268 GIPLRDASLPQQIPIGAL-ASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 528
            G   R A  P+    GAL A+ LA ASPE+Q+ MLGE +YP V   +P+ A K+TGM+LE+  TE+LHLLE  EAL AKV EA++VL+
Sbjct:  541 GPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLK 628

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TrEMBL
Match: B9RYE9_RICCO (Polyadenylate-binding protein, putative OS=Ricinus communis GN=RCOM_0812530 PE=4 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.961e-51
Identity = 115/180 (63.89%), Postives = 121/180 (67.22%), Query Frame = -2

Query:  262 GYQQQLVPGMRPGGAPGPNFFVPMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAGGMFSVPYDVGGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 801
            GYQQQLVPGMRPGGAP PNFFVPMV                                                    GVAGGM SVPYD+ G+P+RDA+L Q IPIGALAS LANASPEQQRTMLGENLYPLVEQLEPD AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+V
Sbjct:  442 GYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRRAGAAQQSQQPVPLMQQQMVPRGRVYRYPPGRGIPDVPMTGVAGGMLSVPYDMSGMPMRDAALSQPIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 621

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TrEMBL
Match: Q9M549_CUCSA (Poly(A)-binding protein OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.470e-50
Identity = 111/180 (61.67%), Postives = 121/180 (67.22%), Query Frame = -2

Query:  262 GYQQQLVPGMRPGGAPGPNFFVPMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAGGMFSVPYDVGGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 801
            GYQQQL+PGMRPGG P PNFFVPMV                                                    GVAGGMFSVPY++GG+P RDA  PQ +P+GALAS LANA+P+QQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+V
Sbjct:  448 GYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 627

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TrEMBL
Match: B9HS30_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_557410 PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.771e-49
Identity = 110/180 (61.11%), Postives = 120/180 (66.67%), Query Frame = -2

Query:  262 GYQQQLVPGMRPGGAPGPNFFVPMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAGGMFSVPYDVGGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 801
            GYQQQLVPGMRPGGAP PNFFVPMV                                                    GVAGGM SVPYD+GG+P+RDA+L Q IPIGALA+ LANA+P+QQRTMLGENLYPLVEQLEP+ AAKVTGMLLEMDQTEVLHLLESPEALK+KV EAM+VLR V
Sbjct:  441 GYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRRAGTGQQSQQPVQLMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLSVPYDMGGMPMRDAALSQPIPIGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKSKVNEAMEVLRTV 620

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TrEMBL
Match: A9PEX9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.771e-49
Identity = 110/180 (61.11%), Postives = 120/180 (66.67%), Query Frame = -2

Query:  262 GYQQQLVPGMRPGGAPGPNFFVPMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAGGMFSVPYDVGGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 801
            GYQQQLVPGMRPGGAP PNFFVPMV                                                    GVAGGM SVPYD+GG+P+RDA+L Q IPIGALA+ LANA+P+QQRTMLGENLYPLVEQLEP+ AAKVTGMLLEMDQTEVLHLLESPEALK+KV EAM+VLR V
Sbjct:  207 GYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRRAGTGQQSQQPVQLMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLSVPYDMGGMPMRDAALSQPIPIGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKSKVNEAMEVLRTV 386

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TrEMBL
Match: B9GHB4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_815675 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.727e-49
Identity = 109/180 (60.56%), Postives = 119/180 (66.11%), Query Frame = -2

Query:  262 GYQQQLVPGMRPGGAPGPNFFVPMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAGGMFSVPYDVGGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 801
            GYQQQLVPGMRPGGAP PNFFVPMV                                                    GVAGGM  VPYD+GG+P+RDA+L Q IP+GALA+ LANA+P+QQRTMLGENLYPLVEQLEP+ AAKVTGMLLEMDQTEVLHLLESPEALKAKV EAM+VLR V
Sbjct:  443 GYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRRAGAGQQSQQPVPLMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLPVPYDMGGMPMRDAALSQSIPVGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKAKVNEAMEVLRTV 622

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TrEMBL
Match: Q1EMR9_PLAMJ (PolyA-binding protein (Fragment) OS=Plantago major GN=pabp1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 3.281e-42
Identity = 101/181 (55.80%), Postives = 115/181 (63.54%), Query Frame = -2

Query:  262 GYQQQLVPGMRPGGAPGPNFFVPMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAGGMFSVPYDVGGIPLRDAS-LPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 801
            GYQQQLVPGMRPGG P PNFF+PMV                                                       GGMFSVPYD+ G+  RDA+ +PQ +P+ ALAS LANA+PEQQRTMLGENLYPLV+QLE ++AAKVTGMLLEMDQTEVLHLLESP+ALK+KV EAM+VLRNV
Sbjct:  112 GYQQQLVPGMRPGGTPMPNFFMPMVQQGQQGQRPGGRRGGGPMQQAQQPVPVMQQQMMPRGRMYRFPPGRNVPDVPM-TGGGMFSVPYDMTGMLPRDAAAIPQPMPVTALASALANATPEQQRTMLGENLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPDALKSKVNEAMEVLRNV 291

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TrEMBL
Match: C5YBU9_SORBI (Putative uncharacterized protein Sb06g021850 OS=Sorghum bicolor GN=Sb06g021850 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.127e-41
Identity = 99/180 (55.00%), Postives = 111/180 (61.67%), Query Frame = -2

Query:  262 GYQQQLVPGMRPGGAPGPNFFVPMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAGGMFSVPYDVGGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 801
            G+QQQLVPGMRPGG   PN+FVP+V                                                    GVAGGM    YD+GG P+RDA++     IG L S LANA+PEQQRT+LGENLYPLVEQLEP+ AAKVTGMLLEMDQTEVLHLLESP+ALK+KVAEAMDVLRNV
Sbjct:  462 GFQQQLVPGMRPGGPHMPNYFVPVVQQGQQGPRPGMRRGAGAQGQQPVPPFQQQIVPRGRMYRYPTGRNMPEAPAMPGVAGGMIQA-YDMGGFPVRDAAVSPAAQIGTLTSALANANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMDQTEVLHLLESPDALKSKVAEAMDVLRNV 640

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TrEMBL
Match: Q9M6E6_TOBAC (Poly(A)-binding protein OS=Nicotiana tabacum GN=PABP PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 6.188e-41
Identity = 84/102 (82.35%), Postives = 95/102 (93.14%), Query Frame = -2

Query:  262 VAGGMFSVPYDVGGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 567
            V GGMFS+PYD+GG+P+RDA + Q IP+GALA+ LAN+SP +QRTMLGENLYPLVEQLEP+ AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRNV
Sbjct:  525 VGGGMFSIPYDMGGMPVRDAGIVQPIPVGALATALANSSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 626

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TrEMBL
Match: Q9M6E5_TOBAC (Poly(A)-binding protein (Fragment) OS=Nicotiana tabacum GN=PABP1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 6.188e-41
Identity = 84/102 (82.35%), Postives = 95/102 (93.14%), Query Frame = -2

Query:  262 VAGGMFSVPYDVGGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 567
            V GGMFS+PYD+GG+P+RDA + Q IP+GALA+ LAN+SP +QRTMLGENLYPLVEQLEP+ AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRNV
Sbjct:  206 VGGGMFSIPYDMGGMPVRDAGIVQPIPVGALATALANSSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 307

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TrEMBL
Match: Q6YYV1_ORYSJ (Os09g0115400 protein OS=Oryza sativa subsp. japonica GN=OJ1310_F05.15 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 6.188e-41
Identity = 94/178 (52.81%), Postives = 110/178 (61.80%), Query Frame = -2

Query:  268 GYQQQLVPGMRPGGAPGPNFFVPMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAGGMFSVPYDVGGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 801
            G+QQ L+PGMRPG  P PNF +PMV                                                    GV GG+   PY++GG+P+RDA+  Q +PIGALA+ LANA+P+QQR MLGENLYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR
Sbjct:  458 GFQQPLMPGMRPGAGPMPNFIMPMVQQGQQPQRPAGRRAGAGGMQQPMPMGQQQMMARGGRGYRYPTGRGMPDPAMHGVGGGVMPSPYEMGGMPMRDAAASQPVPIGALATALANAAPDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 635

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TAIR peptide
Match: AT1G49760.2 (| Symbols: PAB8 | poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671)

HSP 1 Score: 152.14 bits (383), Expect = 3.259e-37
Identity = 80/101 (79.21%), Postives = 88/101 (87.13%), Query Frame = -2

Query:  262 MFSVPYDV---GGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 555
            M SVPYDV   GG+  RD+   Q +PI ALA+ LANA+PEQQRTMLGENLYPLVEQLEP++AAKVTGMLLEMDQTEVLHLLESPEALKAKV EAMDVLR+V
Sbjct:  548 MLSVPYDVSSGGGVHHRDSPTSQPVPIVALATRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSV 648

HSP 2 Score: 51.6026 bits (122), Expect = 5.994e-7
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = -2

Query:  727 GYQQQLVPGMRPGGAPGPNFFVPMV 801
            GYQQQLVPGMRPGG+P PNFF+PM+
Sbjct:  462 GYQQQLVPGMRPGGSPMPNFFMPMM 486

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TAIR peptide
Match: AT1G49760.1 (| Symbols: PAB8, PABP8 | poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671)

HSP 1 Score: 152.14 bits (383), Expect = 3.259e-37
Identity = 80/101 (79.21%), Postives = 88/101 (87.13%), Query Frame = -2

Query:  262 MFSVPYDV---GGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 555
            M SVPYDV   GG+  RD+   Q +PI ALA+ LANA+PEQQRTMLGENLYPLVEQLEP++AAKVTGMLLEMDQTEVLHLLESPEALKAKV EAMDVLR+V
Sbjct:  548 MLSVPYDVSSGGGVHHRDSPTSQPVPIVALATRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSV 648

HSP 2 Score: 51.6026 bits (122), Expect = 5.994e-7
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = -2

Query:  727 GYQQQLVPGMRPGGAPGPNFFVPMV 801
            GYQQQLVPGMRPGG+P PNFF+PM+
Sbjct:  462 GYQQQLVPGMRPGGSPMPNFFMPMM 486

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TAIR peptide
Match: AT4G34110.1 (| Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629)

HSP 1 Score: 135.191 bits (339), Expect = 4.122e-32
Identity = 74/103 (71.84%), Postives = 83/103 (80.58%), Query Frame = -2

Query:  262 GGMFSVPYDVGG---IPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 561
            G MF  P   GG   +P  D      + IGALAS+L+NA+PEQQRTMLGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR+V
Sbjct:  512 GRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSV 614

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TAIR peptide
Match: AT2G23350.1 (| Symbols: PAB4, PABP4 | poly(A) binding protein 4 | chr2:9943209-9946041 FORWARD LENGTH=662)

HSP 1 Score: 127.487 bits (319), Expect = 8.596e-30
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = -2

Query:  262 GGMFSVPYDVGGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNV 561
            GGM  V YD+  +P       Q +  G LA+ LANA+P QQRT+LGE+LYPLV+Q+E ++AAKVTGMLLEMDQTEVLHLLESPEAL AKV+EA+DVLRNV
Sbjct:  539 GGMVPVAYDMNVMPYS-----QPMSAGQLATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKVSEALDVLRNV 633

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TAIR peptide
Match: AT1G71770.2 (| Symbols: PAB5 | poly(A)-binding protein 5 | chr1:26990777-26993489 REVERSE LENGTH=682)

HSP 1 Score: 110.923 bits (276), Expect = 8.325e-25
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = -2

Query:  268 PQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 501
            P  + I  LAS LA ASP++   MLG++LYPLVEQ EP NAAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA+DVLR
Sbjct:  584 PTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLR 661

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TAIR peptide
Match: AT1G71770.1 (| Symbols: PAB5 | poly(A)-binding protein 5 | chr1:26990777-26993489 REVERSE LENGTH=682)

HSP 1 Score: 110.923 bits (276), Expect = 8.325e-25
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = -2

Query:  268 PQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 501
            P  + I  LAS LA ASP++   MLG++LYPLVEQ EP NAAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA+DVLR
Sbjct:  584 PTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLR 661

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TAIR peptide
Match: AT1G22760.1 (| Symbols: PAB3 | poly(A) binding protein 3 | chr1:8055599-8058799 FORWARD LENGTH=660)

HSP 1 Score: 106.301 bits (264), Expect = 2.051e-23
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = -2

Query:  268 VPYDVGGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 546
            +P D   I  + A L   +PI  L S LA+ASP  +  MLGE LYPLVE+ EP + AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA+DVLR
Sbjct:  555 LPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TAIR peptide
Match: AT3G19350.1 (| Symbols: MPC | maternally expressed pab C-terminal | chr3:6705526-6705929 FORWARD LENGTH=103)

HSP 1 Score: 76.2554 bits (186), Expect = 2.273e-14
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = -2

Query:  271 LANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVL 465
            LA+  P++QR ++GE L+ +VE+LEP  A K+TGM+LE+DQ +VLHLL +P+A K  V EAM+VL
Sbjct:   23 LASLPPKEQRDLIGETLFFMVEELEPQFAPKITGMILELDQDKVLHLLVTPKAFKEMVKEAMEVL 87

[Close]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TAIR peptide
Match: AT2G36660.1 (| Symbols: PAB7 | poly(A) binding protein 7 | chr2:15361476-15364398 REVERSE LENGTH=609)

HSP 1 Score: 68.1662 bits (165), Expect = 6.189e-12
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = -2

Query:  265 MLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRN 432
            +LGE L+PLVE+LEP  A K+TGMLLEMD++E+L LL+SPE L  +V EA +VL++
Sbjct:  528 LLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKS 583

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig2900 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig2900 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig2900 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig2900 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
PABP2_ARATH	4.197e-31	71.84	Polyadenylate-binding protein 2 OS=Arabidopsis tha...	[more]
PABP5_ARATH	8.476e-24	73.08	Polyadenylate-binding protein 5 OS=Arabidopsis tha...	[more]
PABP3_ARATH	2.088e-22	61.29	Polyadenylate-binding protein 3 OS=Arabidopsis tha...	[more]
EPAB_XENTR	2.236e-16	57.97	Embryonic polyadenylate-binding protein OS=Xenopus...	[more]
PABP1_RAT	4.981e-16	56.52	Polyadenylate-binding protein 1 OS=Rattus norvegic...	[more]
PABP1_MOUSE	4.981e-16	56.52	Polyadenylate-binding protein 1 OS=Mus musculus GN...	[more]
PABP1_PONAB	6.505e-16	56.52	Polyadenylate-binding protein 1 OS=Pongo abelii GN...	[more]
PABP1_HUMAN	6.505e-16	56.52	Polyadenylate-binding protein 1 OS=Homo sapiens GN...	[more]
PABP1_BOVIN	6.505e-16	56.52	Polyadenylate-binding protein 1 OS=Bos taurus GN=P...	[more]
PABP_USTMA	1.110e-15	53.41	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9RYE9_RICCO	2.961e-51	63.89	Polyadenylate-binding protein, putative OS=Ricinus...	[more]
Q9M549_CUCSA	1.470e-50	61.67	Poly(A)-binding protein OS=Cucumis sativus PE=2 SV...	[more]
B9HS30_POPTR	2.771e-49	61.11	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9PEX9_POPTR	2.771e-49	61.11	Putative uncharacterized protein OS=Populus tricho...	[more]
B9GHB4_POPTR	4.727e-49	60.56	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q1EMR9_PLAMJ	3.281e-42	55.80	PolyA-binding protein (Fragment) OS=Plantago major...	[more]
C5YBU9_SORBI	2.127e-41	55.00	Putative uncharacterized protein Sb06g021850 OS=So...	[more]
Q9M6E6_TOBAC	6.188e-41	82.35	Poly(A)-binding protein OS=Nicotiana tabacum GN=PA...	[more]
Q9M6E5_TOBAC	6.188e-41	82.35	Poly(A)-binding protein (Fragment) OS=Nicotiana ta...	[more]
Q6YYV1_ORYSJ	6.188e-41	52.81	Os09g0115400 protein OS=Oryza sativa subsp. japoni...	[more]

BLAST of Cicer_arietinum_v1_Contig2900 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 9


Match Name	E-value	Identity	Description
AT1G49760.2	3.259e-37	79.21	\| Symbols: PAB8 \| poly(A) binding protein 8 \| chr1...	[more]
AT1G49760.1	3.259e-37	79.21	\| Symbols: PAB8, PABP8 \| poly(A) binding protein 8...	[more]
AT4G34110.1	4.122e-32	71.84	\| Symbols: PAB2, PABP2, ATPAB2 \| poly(A) binding p...	[more]
AT2G23350.1	8.596e-30	67.00	\| Symbols: PAB4, PABP4 \| poly(A) binding protein 4...	[more]
AT1G71770.2	8.325e-25	73.08	\| Symbols: PAB5 \| poly(A)-binding protein 5 \| chr1...	[more]
AT1G71770.1	8.325e-25	73.08	\| Symbols: PAB5 \| poly(A)-binding protein 5 \| chr1...	[more]
AT1G22760.1	2.051e-23	61.29	\| Symbols: PAB3 \| poly(A) binding protein 3 \| chr1...	[more]
AT3G19350.1	2.273e-14	55.38	\| Symbols: MPC \| maternally expressed pab C-termin...	[more]
AT2G36660.1	6.189e-12	60.71	\| Symbols: PAB7 \| poly(A) binding protein 7 \| chr2...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 21..39 score
None	No IPR available	SEG	seg	seg	coord: 26..78 score: NAcoord: 181..191 score: NAcoord: 192..203 score
None	No IPR available	SEG	seg	seg	coord: 26..38 score
IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein	GENE3D	1.10.1900.10	no description	coord: 105..185 score: 5.9
IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein	PFAM	PF00658	PABP	coord: 109..177 score: 7.9
IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein	SMART	SM00517	no description	coord: 117..180 score: 4.5
IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein	PROFILE	PS51309	PABC	coord: 105..182 score: 21
IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein	SUPERFAMILY	63570	PABC (PABP) domain	coord: 45..198 score: 4.4

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig2900 ID=Cicer_arietinum_v1_Contig2900; Name=Cicer_arietinum_v1_Contig2900; organism=Cicer arietinum; type=contig; length=802bp
AAAGTACCAAATCCAAGTCACATAATAAATATCAGCATCCAAGCAGGCCT
TCAACCCAAGGAAGGAGATCGAAAAACCAAAAGTACCTAGTCTAATAAAA
CAGGCTCAATCTGAAGAGTGGATAAAAACCAGTGCCGAAAAGATAAATAG
TCAATCACCAAGGAAGTAAATCCGAGTATAATAAATATCTTAAGAAACAA
GGCTTTCATTAAGTGATAATGAAGACAGCTGATCAGCAGCACCGCCAGCC
TGCTGTTGTGCAACATTCCTAAGGACGTCCATTGCTTCTGCCACCTTCGC
TTTCAGGGCCTCCGGGGACTCAAGCAAGTGCAGAACTTCAGTCTGGTCCA
TCTCCAGAAGCATGCCAGTAACTTTGGCGGCATTGTCGGGCTCCAATTGC
TCCACTAGGGGGTAAAGATTCTCACCGAGCATCGTCCTCTGCTGCTCTGG
AGAAGCATTAGCCAGATGCGAAGCCAAAGCACCAATAGGAATTTGTTGGG
GAAGAGATGCATCACGAAGGGGAATCCCACCCACATCATACGGAACAGAA
AACATGCCTCCAGCTACTCCAGGCATAGGACCATCAGGCATGCCCCTACC
AGGAGGATAACGATACACACGCCCCCTAGGGAGCATCTGCTGTGGCATAA
GCGGAAGTGACTGCTGGGACTGCTGGCCTGCACCTCCACGTCTTCCGCCA
GGACGCTGCCCCTGTTGTCCCTGTGGAACCATTGGCACAAAGAAATTTGG
CCCAGGAGCCCCTCCAGGCCTCATTCCAGGAACAAGTTGTTGCTGATACC
CA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002004	PABP_HYD

Search form

Cicer_arietinum_v1_Contig2900