Cicer_arietinum_v1_Contig2950

Contig Overview
NameCicer_arietinum_v1_Contig2950
Unique NameCicer_arietinum_v1_Contig2950
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length627
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
HO067130ESTHO067130:126..400 +Cicer arietinum unigene v1n/a
FE672369ESTFE672369:1..627 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
HO067130HO067130Cicer arietinumEST
FE672369FE672369Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. SwissProt
Match: SELT_ARATH (SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 5.980e-31
Identity = 67/112 (59.82%), Postives = 79/112 (70.54%), Query Frame = -3 
Query:  290 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRM 625
            V+ ANYP P PKR+++K                  IFPM+G    P WY+SLR+NRFG++AS WLLGN LQSFLQS+GAFEV  NGELVFSKLKE RFPGEIEL+DLI+  M
Sbjct:   89 VVLANYPAPAPKRILAKVVPVAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFSKLKEGRFPGEIELRDLISGTM 200
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. SwissProt
Match: HSP6_HETGL (Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.693e-9
Identity = 36/112 (32.14%), Postives = 53/112 (47.32%), Query Frame = -3 
Query:  278 NYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRMATSR 613
            NYPP + + + ++                   FP LG + TP ++  + SNR       +L  NA++  LQSTGAFE+Y   E ++SKL+  R P   EL   I   +A  R
Sbjct:  117 NYPPGILRTVGAQVIGMVKIALIVCVVSGRSPFPTLG-LETPTFFQWMLSNRLSAALMLFLFSNAIEGMLQSTGAFEIYIESERIWSKLESGRVPSPPELFQAIDSHLAIRR 227
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. TrEMBL
Match: D7SY21_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_105.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00011172001 PE=4 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.922e-38
Identity = 79/118 (66.95%), Postives = 91/118 (77.12%), Query Frame = -3 
Query:  272 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRMATSRLV 625
            V+ ANYPPPLPKRL+SK                  IFP LGFIA PPWYYSLR+NRFGTI++ WLLGN LQSFLQS+GAFEVY NGELVFSKLK++RFPGEIELKDL+ +R+  SR+V
Sbjct:   98 VVLANYPPPLPKRLLSKVVPVVQIGVIGIVMAGEQIFPRLGFIAPPPWYYSLRANRFGTISTTWLLGNFLQSFLQSSGAFEVYCNGELVFSKLKQQRFPGEIELKDLVGQRLVASRIV 215
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. TrEMBL
Match: A5BN73_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024323 PE=4 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.922e-38
Identity = 79/118 (66.95%), Postives = 91/118 (77.12%), Query Frame = -3 
Query:  272 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRMATSRLV 625
            V+ ANYPPPLPKRL+SK                  IFP LGFIA PPWYYSLR+NRFGTI++ WLLGN LQSFLQS+GAFEVY NGELVFSKLK++RFPGEIELKDL+ +R+  SR+V
Sbjct:  103 VVLANYPPPLPKRLLSKVVPVVQIGVIGIVMAGEQIFPRLGFIAPPPWYYSLRANRFGTISTTWLLGNFLQSFLQSSGAFEVYCNGELVFSKLKQQRFPGEIELKDLVGQRLVASRIV 220
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. TrEMBL
Match: B9T1J6_RICCO (Selenoprotein T, putative OS=Ricinus communis GN=RCOM_0186960 PE=4 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.960e-34
Identity = 71/118 (60.17%), Postives = 85/118 (72.03%), Query Frame = -3 
Query:  272 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRMATSRLV 625
            ++ ANYPP  PKRL+SK                  IFP LGF   PPWYYSLR+N+FG+IAS WL GN +QSFLQS+GAFEVYFNGELVFSKL E RFPGEIEL+DL+ +++A +R V
Sbjct:  112 IVLANYPPSFPKRLLSKVVPVVQFGIIGLITAGEHIFPRLGFAVPPPWYYSLRANKFGSIASTWLFGNFIQSFLQSSGAFEVYFNGELVFSKLSENRFPGEIELRDLVGQKLAITRTV 229
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. TrEMBL
Match: A9P9D4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_723032 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.366e-34
Identity = 72/115 (62.61%), Postives = 84/115 (73.04%), Query Frame = -3 
Query:  281 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRMATS 625
            V+  NYPP LPKR+ +K                  IFPMLG +  PPWYYSLR+N+FGTIAS WLLGNAL+SFLQS+GAFEVY N ELVFSKL+E RFPGEIELKDL+ +R+A S
Sbjct:  104 VVLVNYPPSLPKRVAAKLVPVFQIGVMGIVLGGEQIFPMLGLMTPPPWYYSLRANKFGTIASTWLLGNALRSFLQSSGAFEVYCNDELVFSKLREERFPGEIELKDLVGRRLANS 218
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. TrEMBL
Match: B9GIG5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_641057 PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.167e-33
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = -3 
Query:  260 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRMATSRLVSSAS 625
            V+ ANYPP LPKR V+K                  IFPMLG + TPPWYYSLR+N+FGTIAS WLLGNALQSFLQS+GAFEVY + ELVFSKL+E RFPGEIELKD++ +R+A + + +  S
Sbjct:   14 VVLANYPPSLPKRAVAKLVPVFQIGVVGIVLGGEQIFPMLG-VRTPPWYYSLRANKFGTIASTWLLGNALQSFLQSSGAFEVYCDDELVFSKLREGRFPGEIELKDIVGRRLANADISNMLS 134
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. TrEMBL
Match: C6T4Z1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.404e-32
Identity = 72/119 (60.50%), Postives = 86/119 (72.27%), Query Frame = -3 
Query:  269 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRMATSRLVS 625
            V+ ANYPPPLPKR++ K                  IFP LG I  PPWYYSLR+N+F +IAS WLL N LQSFLQS+GAFEVY NG+LVFSKLKE RFPGEIEL++L+ +R+A +R VS
Sbjct:  103 VVLANYPPPLPKRILGKVVPVVQTGIIVAIVAGDQIFPRLG-ITPPPWYYSLRANKFRSIASTWLLTNFLQSFLQSSGAFEVYCNGDLVFSKLKENRFPGEIELRELVGRRLANTRFVS 220
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. TrEMBL
Match: B9IGA7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_835576 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.834e-32
Identity = 71/113 (62.83%), Postives = 82/113 (72.57%), Query Frame = -3 
Query:  287 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRMA 625
            VI AN+P PLPKRL+SK                  IFP LGF A P WYYSLR+NRFG+IAS WL GN +QSFLQS+GAFEV+ NGELVFSKL E RFPGEIEL+D++ KR+A
Sbjct:  109 VILANHPAPLPKRLLSKVVPAVQFGIIGIILAGEQIFPRLGFAAPPSWYYSLRANRFGSIASTWLFGNFIQSFLQSSGAFEVFCNGELVFSKLMEHRFPGEIELRDVVGKRLA 221
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. TrEMBL
Match: A9PGA5_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.834e-32
Identity = 71/113 (62.83%), Postives = 82/113 (72.57%), Query Frame = -3 
Query:  287 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRMA 625
            VI AN+P  LPKRL+SK                  IFP LGF A PPWYYSLR+NRFG+IAS WL GN +QSFLQS+GAFEV+ NGELVFSKL E RFPGEIEL+D++ KR+A
Sbjct:  109 VILANHPASLPKRLLSKVVPAVQFGIIGIILAGEQIFPRLGFAAPPPWYYSLRANRFGSIASTWLFGNFIQSFLQSSGAFEVFCNGELVFSKLMEHRFPGEIELRDVVGKRLA 221
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. TrEMBL
Match: A9NLA1_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.459e-31
Identity = 66/114 (57.89%), Postives = 80/114 (70.18%), Query Frame = -3 
Query:  284 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRMAT 625
            V+ +NYPPPLPKR++SK                  IFP LG+ A PPWYYSL+  RFG IA+ WLLGNALQSFLQ TGAFEV  NG+LVFSKL+E RFPGE EL++L+ + + T
Sbjct:  112 VVLSNYPPPLPKRMLSKFVPVLQIGSIVLITAGDHIFPRLGYTAPPPWYYSLKQKRFGVIATTWLLGNALQSFLQGTGAFEVECNGDLVFSKLRENRFPGEYELRELVGRSLGT 225
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. TrEMBL
Match: D7MQG0_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495986 PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.314e-30
Identity = 67/122 (54.92%), Postives = 86/122 (70.49%), Query Frame = -3 
Query:  260 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRMATSRLVSSAS 625
            VI ANYPPP PKRL++K                  I PM+G    P W++SLR+NRFG++AS WL+GN LQS+LQS+GAFEV+ NGELVFSKLKE RFPGEIEL+DLI+K +    +++ +S
Sbjct:  105 VILANYPPPAPKRLLAKFVPVAQMGVIGMIVAGDRILPMIGITHPPAWFHSLRANRFGSMASTWLIGNFLQSYLQSSGAFEVHCNGELVFSKLKEGRFPGEIELRDLISKTLTRPSILAGSS 226
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. TAIR peptide
Match: AT5G58640.2 (| Symbols: | Selenoprotein, Rdx type | chr5:23697996-23699505 FORWARD LENGTH=227)

HSP 1 Score: 134.806 bits (338), Expect = 3.624e-32
Identity = 66/122 (54.10%), Postives = 85/122 (69.67%), Query Frame = -3 
Query:  260 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRMATSRLVSSAS 625
            VI ANYPPP PKRL++K                  I PM+G    P W++SLR+NRFG++AS WL+GN LQS+LQS+GAFEV+ NGE VFSKLKE RFPGEIEL+DLI+K +    +++ +S
Sbjct:  105 VILANYPPPAPKRLLAKVVPVVQMGVIGMIVAGDRILPMIGITNPPAWFHSLRANRFGSMASTWLIGNFLQSYLQSSGAFEVHCNGEPVFSKLKEGRFPGEIELRDLISKTLTRPSILTGSS 226
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. TAIR peptide
Match: AT5G58640.1 (| Symbols: | Selenoprotein, Rdx type | chr5:23697996-23699505 FORWARD LENGTH=228)

HSP 1 Score: 134.806 bits (338), Expect = 3.624e-32
Identity = 66/122 (54.10%), Postives = 85/122 (69.67%), Query Frame = -3 
Query:  260 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRMATSRLVSSAS 625
            VI ANYPPP PKRL++K                  I PM+G    P W++SLR+NRFG++AS WL+GN LQS+LQS+GAFEV+ NGE VFSKLKE RFPGEIEL+DLI+K +    +++ +S
Sbjct:  106 VILANYPPPAPKRLLAKVVPVVQMGVIGMIVAGDRILPMIGITNPPAWFHSLRANRFGSMASTWLIGNFLQSYLQSSGAFEVHCNGEPVFSKLKEGRFPGEIELRDLISKTLTRPSILTGSS 227
[Close]
BLAST of Cicer_arietinum_v1_Contig2950 vs. TAIR peptide
Match: AT3G47300.1 (| Symbols: SELT | SELT-like protein precursor | chr3:17428685-17429555 REVERSE LENGTH=209)

HSP 1 Score: 134.035 bits (336), Expect = 6.182e-32
Identity = 67/112 (59.82%), Postives = 79/112 (70.54%), Query Frame = -3 
Query:  290 VIFANYPPPLPKRLVSKAXXXXXXXXXXXXXXXXXIFPMLGFIATPPWYYSLRSNRFGTIASAWLLGNALQSFLQSTGAFEVYFNGELVFSKLKERRFPGEIELKDLITKRM 625
            V+ ANYP P PKR+++K                  IFPM+G    P WY+SLR+NRFG++AS WLLGN LQSFLQS+GAFEV  NGELVFSKLKE RFPGEIEL+DLI+  M
Sbjct:   89 VVLANYPAPAPKRILAKVVPVAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFSKLKEGRFPGEIELRDLISGTM 200
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig2950 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
SELT_ARATH5.980e-3159.82SelT-like protein OS=Arabidopsis thaliana GN=At3g4... [more]
HSP6_HETGL1.693e-932.14Putative esophageal gland cell secretory protein 6... [more]
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BLAST of Cicer_arietinum_v1_Contig2950 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7SY21_VITVI2.922e-3866.95Whole genome shotgun sequence of line PN40024, sca... [more]
A5BN73_VITVI2.922e-3866.95Putative uncharacterized protein OS=Vitis vinifera... [more]
B9T1J6_RICCO1.960e-3460.17Selenoprotein T, putative OS=Ricinus communis GN=R... [more]
A9P9D4_POPTR4.366e-3462.61Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9GIG5_POPTR2.167e-3360.66Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
C6T4Z1_SOYBN1.404e-3260.50Putative uncharacterized protein OS=Glycine max PE... [more]
B9IGA7_POPTR1.834e-3262.83Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PGA5_POPTR1.834e-3262.83Putative uncharacterized protein OS=Populus tricho... [more]
A9NLA1_PICSI3.459e-3157.89Putative uncharacterized protein OS=Picea sitchens... [more]
D7MQG0_ARALY1.314e-3054.92Putative uncharacterized protein OS=Arabidopsis ly... [more]
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BLAST of Cicer_arietinum_v1_Contig2950 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT5G58640.23.624e-3254.10| Symbols: | Selenoprotein, Rdx type | chr5:23697... [more]
AT5G58640.13.624e-3254.10| Symbols: | Selenoprotein, Rdx type | chr5:23697... [more]
AT3G47300.16.182e-3259.82| Symbols: SELT | SELT-like protein precursor | ch... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 41..53
score
NoneNo IPR availableSEGsegsegcoord: 19..36
score
NoneNo IPR availableSEGsegsegcoord: 7..30
score
IPR011893Selenoprotein, Rdx typePFAMPF10262Rdxcoord: 69..110
score: 1.5
IPR011893Selenoprotein, Rdx typeTIGRFAMsTIGR02174CXXU_selWTH: selT/selW/selH selenoproteincoord: 3..110
score: 3.8
IPR012335Thioredoxin foldGENE3D3.40.30.10no descriptioncoord: 72..117
score: 8.6
IPR012336Thioredoxin-like foldSUPERFAMILY52833Thioredoxin-likecoord: 70..119
score: 1
IPR019389Selenoprotein TPANTHERPTHR13544SELENOPROTEIN Tcoord: 1..126
score: 1.4

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig2950 ID=Cicer_arietinum_v1_Contig2950; Name=Cicer_arietinum_v1_Contig2950; organism=Cicer arietinum; type=contig; length=627bp
GACAGTGTAAGCTATGTCTATTACAAACTCAAATTAACCGAGTTTGGCTT
CAGAAGTTACTTGGTTCTTTCAACACAAGGCCCATTTTCCAGTACAAACA
CATAAAAACCTTACAACATTACACTCCTATGATATATATAATGTGTACCA
GCCTCTACTTCACAATGCAATGGTAGATCCATCCATTTACATCATCTTTG
TCAGTTCAAATTAGATCTTCAAGAACGGCGATTAGGCAAATGAGCTAAAG
CCTCAATTCTGAGGCACTGCTGACAAGTCTAGAAGTTGCCATCCTTTTGG
TGATCAGATCCTTCAACTCTATCTCTCCAGGAAACCTTCTCTCCTTGAGT
TTAGAGAACACCAATTCGCCGTTGAAGTAAACTTCAAATGCCCCGGTGCT
TTGCAAGAATGACTGCAAGGCATTCCCAAGAAGCCAGGCACTGGCAATGG
TTCCGAACCTATTAGAACGCAAGCTATAATACCAAGGAGGAGTTGCAATA
AAACCCAACATTGGAAAAATCTGTTCCCCTCCAATTACAACACTTATAAC
ACCAACTTGAACAACTGGAACCGCTTTGCTTACCAGACGTTTTGGAAGTG
GTGGGGGATAATTTGCAAAAATAACCT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Molecular Function
TermDefinition
GO:0008430selenium binding
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR011893Selenoprotein_Rdx-typ
IPR012335Thioredoxin fold
IPR012336Thioredoxin-like_fold
IPR019389Selenoprotein_T