Cicer_arietinum_v1_Contig3172

Contig Overview
NameCicer_arietinum_v1_Contig3172
Unique NameCicer_arietinum_v1_Contig3172
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length589
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
FE673466ESTFE673466:1..472 -Cicer arietinum unigene v1n/a
GR404799ESTGR404799:264..473 +Cicer arietinum unigene v1n/a
GR403061ESTGR403061:254..589 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FE673466FE673466Cicer arietinumEST
GR404799GR404799Cicer arietinumEST
GR403061GR403061Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig3172 vs. TrEMBL
Match: D7TBV2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00015463001 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.535e-14
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 2 
Query:   35 QVSHLEGGLEEKRHNVMELQKQSKKLEEAVITAKKQSISRQMQLSKLHKCFLQMQHCTERLKASENELRALVDTVMFESD 274
            ++S +E  LEEK+  V++LQK+S KLE A+  AKK S  RQ+QL+KLH+CFLQ++  TERLK+ E EL+ ++   M E D
Sbjct:  251 EISQMEERLEEKQQLVLDLQKKSLKLEGALTAAKKLSSQRQLQLTKLHRCFLQVKENTERLKSCEQELQTVLGAAMMEID 330
[Close]
BLAST of Cicer_arietinum_v1_Contig3172 vs. TrEMBL
Match: B9ILH1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_578396 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.903e-12
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:   35 QVSHLEGGLEEKRHNVMELQKQSKKLEEAVITAKKQSISRQMQLSKLHKCFLQMQHCTERLKASENELRALVDTVM 262
            QVSH+E  LE K+  V +LQK++  LE A++TAKK S  R+MQL+KL KCFLQ++  T RLK+ E EL+     +M
Sbjct:  276 QVSHMEERLENKQQFVSDLQKKALILEGALLTAKKLSSQRRMQLTKLQKCFLQVKEYTNRLKSCEQELKVTFHILM 351
[Close]
BLAST of Cicer_arietinum_v1_Contig3172 vs. TrEMBL
Match: Q0E2W6_ORYSJ (Os02g0208200 protein OS=Oryza sativa subsp. japonica GN=Os02g0208200 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.623e-11
Identity = 36/92 (39.13%), Postives = 60/92 (65.22%), Query Frame = 2 
Query:   35 QVSHLEGGLEEKRHNVMELQKQSKKLEEAVITAKKQSISRQMQLSKLHKCFLQMQHCTERLKASENELRALVDTVMFESDGDGAVQHTNGSL 310
            +VS ++  +  K  ++ +LQK+S+KLE+ +  A+K S  RQ+ ++KL+KCFLQ+Q   +R+K SE EL++L+D  M E D        +GS+
Sbjct:    8 EVSQIKDKVAAKEQHIADLQKRSQKLEDELSAARKVSSERQLVVTKLYKCFLQLQDYNDRVKMSEKELQSLIDDAMGEVDIGEEATTKDGSM 99
[Close]
BLAST of Cicer_arietinum_v1_Contig3172 vs. TrEMBL
Match: A3A4D8_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_05839 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.623e-11
Identity = 36/92 (39.13%), Postives = 60/92 (65.22%), Query Frame = 2 
Query:   35 QVSHLEGGLEEKRHNVMELQKQSKKLEEAVITAKKQSISRQMQLSKLHKCFLQMQHCTERLKASENELRALVDTVMFESDGDGAVQHTNGSL 310
            +VS ++  +  K  ++ +LQK+S+KLE+ +  A+K S  RQ+ ++KL+KCFLQ+Q   +R+K SE EL++L+D  M E D        +GS+
Sbjct:  245 EVSQIKDKVAAKEQHIADLQKRSQKLEDELSAARKVSSERQLVVTKLYKCFLQLQDYNDRVKMSEKELQSLIDDAMGEVDIGEEATTKDGSM 336
[Close]
BLAST of Cicer_arietinum_v1_Contig3172 vs. TrEMBL
Match: A2X296_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06320 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.623e-11
Identity = 36/92 (39.13%), Postives = 60/92 (65.22%), Query Frame = 2 
Query:   35 QVSHLEGGLEEKRHNVMELQKQSKKLEEAVITAKKQSISRQMQLSKLHKCFLQMQHCTERLKASENELRALVDTVMFESDGDGAVQHTNGSL 310
            +VS ++  +  K  ++ +LQK+S+KLE+ +  A+K S  RQ+ ++KL+KCFLQ+Q   +R+K SE EL++L+D  M E D        +GS+
Sbjct:  245 EVSQIKDKVAAKEQHIADLQKRSQKLEDELSAARKVSSERQLVVTKLYKCFLQLQDYNDRVKMSEKELQSLIDDAMGEVDIGEEATTKDGSM 336
[Close]
BLAST of Cicer_arietinum_v1_Contig3172 vs. TrEMBL
Match: D5A7V2_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.880e-9
Identity = 35/88 (39.77%), Postives = 56/88 (63.64%), Query Frame = 2 
Query:   65 EKRHNVMELQKQSKKLEEAVITAKKQSISRQMQLSKLHKCFLQMQHCTERLKASENELRALVDTVMFESDG-------DGAVQHTNGS 307
            +K+  + E+QK+S+KLEE++  A+K ++ R+ QL KL  CFLQ +  +E+LK+ E EL+ LVD  + E +G       DG   + NG+
Sbjct:    7 KKQLFMSEMQKKSQKLEESLAIARKTALQRRKQLKKLQNCFLQFKDYSEKLKSCEQELQLLVDASVLELNGSDDGGDEDGHTANANGN 94
[Close]
BLAST of Cicer_arietinum_v1_Contig3172 vs. TrEMBL
Match: B6TBJ4_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.219e-8
Identity = 30/80 (37.50%), Postives = 54/80 (67.50%), Query Frame = 2 
Query:   35 QVSHLEGGLEEKRHNVMELQKQSKKLEEAVITAKKQSISRQMQLSKLHKCFLQMQHCTERLKASENELRALVDTVMFESD 274
            +VS ++  +  K  ++ +LQK+++KLE+ +  A+K S  RQ+ ++ L+K FLQ+Q   +R+K +E+ L++LVD  M E D
Sbjct:    8 EVSQIKDKISAKGQHIADLQKKAQKLEDELAAARKVSSERQLAVTDLYKHFLQLQDYNDRVKTAEHRLQSLVDAAMAELD 87
[Close]
BLAST of Cicer_arietinum_v1_Contig3172 vs. TrEMBL
Match: B4FTP3_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.591e-8
Identity = 28/80 (35.00%), Postives = 54/80 (67.50%), Query Frame = 2 
Query:   35 QVSHLEGGLEEKRHNVMELQKQSKKLEEAVITAKKQSISRQMQLSKLHKCFLQMQHCTERLKASENELRALVDTVMFESD 274
            +V+ ++  +  K  ++ +LQK+++KLE+ ++ A+K S  RQ+ ++ L+K FLQ+Q   +R+K +E  L++LVD  + E D
Sbjct:  230 EVNQIKDKISGKEQHIADLQKKAQKLEDELVAARKVSSERQLAVTDLYKHFLQLQDYNDRVKTAEQRLQSLVDAALVELD 309
[Close]
BLAST of Cicer_arietinum_v1_Contig3172 vs. TrEMBL
Match: B6T3J6_MAIZE (RNA-binding protein 25 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.078e-8
Identity = 27/80 (33.75%), Postives = 54/80 (67.50%), Query Frame = 2 
Query:   35 QVSHLEGGLEEKRHNVMELQKQSKKLEEAVITAKKQSISRQMQLSKLHKCFLQMQHCTERLKASENELRALVDTVMFESD 274
            +++ ++  +  K  ++ +LQK+++KLE+ ++ A+K S  RQ+ ++ L+K FLQ+Q   +R+K +E  L++LVD  + E D
Sbjct:  232 EINQIKDKISGKEQHIADLQKKAQKLEDELVAARKVSSERQLAVTDLYKHFLQLQDYNDRVKTAEQRLQSLVDAALVELD 311
[Close]
BLAST of Cicer_arietinum_v1_Contig3172 vs. TrEMBL
Match: D7LZD5_ARALY (RNA recognition motif-containing protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_488893 PE=4 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.347e-7
Identity = 31/78 (39.74%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:   35 QVSHLEGGLEEKRHNVMELQKQSKKLEEAVITAKKQSISRQMQLSKLHKCFLQMQHCTERLKASENELRALVDTVMFE 268
            +V  +E  L+EK     ELQK+SK+LE+ +I  KK    R+ +L+KLH+ F +++ CT+ LK  + EL++LV++   E
Sbjct:  246 EVLVMEERLDEKEVVCSELQKKSKRLEDLLINEKKLVAQRRKELAKLHESFSRVRECTDNLKDCQQELQSLVNSAARE 323
[Close]
BLAST of Cicer_arietinum_v1_Contig3172 vs. TAIR peptide
Match: AT5G19960.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6744029-6746133 FORWARD LENGTH=337)

HSP 1 Score: 59.3066 bits (142), Expect = 1.751e-9
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:   35 QVSHLEGGLEEKRHNVMELQKQSKKLEEAVITAKKQSISRQMQLSKLHKCFLQMQHCTERLKASENELRALVDTVMFE 268
            +V  +E  LE K     ELQK+SK+LE+ +I  KK    R+ +L+KLHK + +++ CT+ LK  E EL+ LV++   E
Sbjct:  246 EVMVMEERLEVKEVVCSELQKKSKRLEDLLINEKKLVSQRRKELAKLHKSYSRVRECTDNLKDCEQELQLLVNSAARE 323
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig3172 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7TBV2_VITVI2.535e-1451.25Whole genome shotgun sequence of line PN40024, sca... [more]
B9ILH1_POPTR6.903e-1251.32Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q0E2W6_ORYSJ2.623e-1139.13Os02g0208200 protein OS=Oryza sativa subsp. japoni... [more]
A3A4D8_ORYSJ2.623e-1139.13Putative uncharacterized protein OS=Oryza sativa s... [more]
A2X296_ORYSI2.623e-1139.13Putative uncharacterized protein OS=Oryza sativa s... [more]
D5A7V2_PICSI1.880e-939.77Putative uncharacterized protein OS=Picea sitchens... [more]
B6TBJ4_MAIZE1.219e-837.50Putative uncharacterized protein OS=Zea mays PE=4 ... [more]
B4FTP3_MAIZE1.591e-835.00Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
B6T3J6_MAIZE2.078e-833.75RNA-binding protein 25 OS=Zea mays PE=2 SV=1[more]
D7LZD5_ARALY1.347e-739.74RNA recognition motif-containing protein (Fragment... [more]
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BLAST of Cicer_arietinum_v1_Contig3172 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G19960.11.751e-941.03| Symbols: | RNA-binding (RRM/RBD/RNP motifs) fam... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 49..63
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig3172 ID=Cicer_arietinum_v1_Contig3172; Name=Cicer_arietinum_v1_Contig3172; organism=Cicer arietinum; type=contig; length=589bp
TATGTGTTGATGGTGCTGGAAAGGGGAATTTTGTCAGGTTTCTCATTTGG
AAGGGGGATTGGAAGAGAAAAGGCACAATGTTATGGAGTTACAAAAACAA
TCAAAGAAGTTGGAGGAAGCAGTAATTACTGCTAAGAAACAGTCTATATC
TCGCCAGATGCAGTTGAGTAAGCTGCATAAGTGTTTTCTCCAAATGCAAC
ATTGCACAGAAAGACTTAAAGCTAGTGAAAATGAACTCCGGGCTCTAGTT
GATACAGTAATGTTTGAGAGTGATGGGGATGGTGCTGTACAACATACAAA
TGGAAGTCTTGATGGCAGATAGTTATTATTAACTCCTATCATATTTCCAA
AAATACCAAAATGTATGAAAATATTTTTGTAGCATGTGTTGTCTCTTTAA
TTGCTAGCTGGGTTTTATTATCTCACTGTCTCCCTGTATGGTTAGAAATA
TCATTGGTTACTTTTGAAGTTCATAGATTTGTGCGAAAAATTTCATACCA
ACAAGCAGTGCTCTAATCACGTTTGGACAAAAATTACAGGAGAGTGAGTA
GCTTTTACCCAAACCCAAGTGTGGTTTGAAACCTCAACA
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