Cicer_arietinum_v1_Contig3297

Contig Overview
NameCicer_arietinum_v1_Contig3297
Unique NameCicer_arietinum_v1_Contig3297
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length848
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
FE670050ESTFE670050:1..450 +Cicer arietinum unigene v1n/a
CK148778ESTCK148778:242..848 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FE670050FE670050Cicer arietinumEST
CK148778CK148778Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TrEMBL
Match: C6TK36_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.991e-26
Identity = 55/85 (64.71%), Postives = 59/85 (69.41%), Query Frame = -2 
Query:  296 RLVEAYFRSNPLGRPYNHLLQSTTD--PFSSIAGVINSESQVDTAVEIDSMV----TSSMRRSDASRLSDVDSGDSXXXXXXRLN 532
            RLVEAYFRSNPLGR          D   FSSI  VINSESQ+DTAVEIDSMV    +SS RR+DASR+SDVDSGDS      RLN
Sbjct:  358 RLVEAYFRSNPLGRNQEQPPPPVDDRDSFSSIGAVINSESQLDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN 442

HSP 2 Score: 54.299 bits (129), Expect = 8.991e-26
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = -1 
Query:  624 RDLVQPNKSENARGTAERNTPC*VGF-NISGMRRE-QNPVASPDDVAGSNQNNVNGAELGE 800
            RDLVQP + + AR TAER T     F    GMRRE QN VA P+DV G  QNNVN +E G+
Sbjct:  266 RDLVQPPEPDAARETAERTTSLLSRFLTARGMRREHQNLVAPPEDVMGLAQNNVNTSEAGD 326
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TrEMBL
Match: B9SXK6_RICCO (Rnf5, putative OS=Ricinus communis GN=RCOM_0504480 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.979e-14
Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = -2 
Query:  323 RLVEAYFRSNPLGRPYNHLLQ-STTDPFSSIAGVINSESQVDTAVEIDSM----VTSSMRRSDASRLSDVDSGDS 532
            RL+EAYFR++P GR  +  L     D FSSIA VINSESQVDTAVEIDSM     +SS RR+D SR+SD+D+ DS
Sbjct:  344 RLIEAYFRNHPTGRNQDPPLPVDDRDSFSSIAAVINSESQVDTAVEIDSMGSLSTSSSRRRNDTSRVSDMDTVDS 418

HSP 2 Score: 25.0238 bits (53), Expect = 3.979e-14
Identity = 10/29 (34.48%), Postives = 15/29 (51.72%), Query Frame = -1 
Query:  633 ISGMRREQNPVASPDDVAGSNQNNVNGAE 719
            + G R EQNP+A  DD+     +  +  E
Sbjct:  278 LRGQRAEQNPMAPLDDIVDLTHSGTSSPE 306
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TrEMBL
Match: D7LVZ3_ARALY (Zinc finger family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486254 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.600e-13
Identity = 51/81 (62.96%), Postives = 60/81 (74.07%), Query Frame = -2 
Query:  323 RLVEAYFRSNPLGRPY---NH---LLQSTTDPFSSIAGVINSESQVDTAVEIDSMVT----SSMRRSD-ASRLSDVDSGDS 532
            RLV+AYFR++PLGR +   NH   ++    D FSSIA VINSESQVDTAVEIDSMVT    SS RR++  SR+SDVDS DS
Sbjct:  348 RLVDAYFRTHPLGRNHQEQNHHAPVMVDDRDSFSSIAAVINSESQVDTAVEIDSMVTHSTSSSRRRNENGSRVSDVDSADS 428
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TrEMBL
Match: Q9M2P5_ARATH (Putative uncharacterized protein T10K17.240 OS=Arabidopsis thaliana GN=T10K17.240 PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.940e-13
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = -2 
Query:  323 RLVEAYFRSNPLGRPY---NH---LLQSTTDPFSSIAGVINSESQVDTAVEIDSMV--TSSMRR--SDASRLSDVDSGDS 532
            RLV+AYFR++PLGR +   NH   ++    D FSSIA VINSESQVDTAVEIDSM   TSS RR   + SR+SDVDS DS
Sbjct:  340 RLVDAYFRTHPLGRNHQEQNHHAPVVVDDRDSFSSIAAVINSESQVDTAVEIDSMALSTSSSRRRNENGSRVSDVDSADS 419
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TrEMBL
Match: Q8RXF2_ARATH (At3g58030 OS=Arabidopsis thaliana GN=At3g58030 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.940e-13
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = -2 
Query:  323 RLVEAYFRSNPLGRPY---NH---LLQSTTDPFSSIAGVINSESQVDTAVEIDSMV--TSSMRR--SDASRLSDVDSGDS 532
            RLV+AYFR++PLGR +   NH   ++    D FSSIA VINSESQVDTAVEIDSM   TSS RR   + SR+SDVDS DS
Sbjct:  348 RLVDAYFRTHPLGRNHQEQNHHAPVVVDDRDSFSSIAAVINSESQVDTAVEIDSMALSTSSSRRRNENGSRVSDVDSADS 427
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TrEMBL
Match: B9IIA0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_735061 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.956e-11
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = -2 
Query:  323 LVEAYFRSNPLGRPYNHLLQ-STTDPFSSIAGVINSESQVDTAVEIDSMV----TSSMRRSDASRLSDVDSGDS 529
            LVE YFR++ +GR +         D FSSIA VINSESQ+DTA EIDS V    +SS RR++ASR+SDVDSGDS
Sbjct:  364 LVETYFRTHTIGRNHEQPQPVDDRDSFSSIAAVINSESQMDTAAEIDSPVSLSTSSSRRRNNASRVSDVDSGDS 437
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TrEMBL
Match: B9HAA9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_802150 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.656e-10
Identity = 47/84 (55.95%), Postives = 54/84 (64.29%), Query Frame = -2 
Query:  296 RLVEAYFRSNPLGRPYNHLLQ-STTDPFSSIAGVINSESQVDTAVEIDSMVT----SSMRRSDASRLSDVDSGDSXXXXXXRLN 532
            R+ E YFR++P GR           D FSSIA VINS SQ+DTAV  DSMV+    SS RR+DASR+SDVDSGDS      RLN
Sbjct:  333 RIAETYFRNHPTGRNQEQPQPVDDRDSFSSIAAVINSGSQMDTAV--DSMVSLSTSSSRRRNDASRISDVDSGDSRAPRRRRLN 414
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TrEMBL
Match: B9SAM1_RICCO (Rnf5, putative OS=Ricinus communis GN=RCOM_1104350 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.122e-9
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = -2 
Query:  296 RLVEAYFRSNPLGRPYNHLLQ-STTDPFSSIAGVINSESQVDTAVEIDSM----VTSSMRRSDASRLSDVDSGDSXXXXXXRLN 532
            RL++A+ RS+P+GR           D FSSIA VINSESQ+D AVEIDSM     +SS RR+D+  + D+DSG+S      RLN
Sbjct:  341 RLLDAFLRSHPIGRNQEQPQPLDDRDSFSSIAAVINSESQIDNAVEIDSMGSLSSSSSRRRNDSLIVYDLDSGESPAPRRRRLN 424
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TrEMBL
Match: D7LI12_ARALY (Zinc finger family protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483289 PE=4 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.078e-9
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = -2 
Query:  323 RLVEAYFRSNPLGRPYNH-----LLQSTTDPFSSIAGVINSESQVDTAVEIDSMVT----SSMRR-SDASRLSDVDSGDS 532
            RLV+AY  ++ LGR         +     D FSSI GVINSESQVDTA EIDSM+T    SS+RR  ++SR+SDVDS DS
Sbjct:  328 RLVDAYLITHGLGRNQEQNNNPPVGVEDRDSFSSIVGVINSESQVDTAAEIDSMLTVSTSSSVRRHENSSRVSDVDSADS 407
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TrEMBL
Match: D6PQJ4_9BRAS (AT3G58030-like protein (Fragment) OS=Neslia paniculata PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.713e-7
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = -2 
Query:  389 RLVEAYFRSNPLGRPY---NH---LLQSTTDPFSSIAGVINSESQVDTAVEIDS 532
            RLV+AYFR++PLGR +   NH   ++    D FSSIA VINSESQVDTAVEIDS
Sbjct:  106 RLVDAYFRTHPLGRNHQEQNHHAPVVVDDRDSFSSIAAVINSESQVDTAVEIDS 159
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TAIR peptide
Match: AT3G58030.4 (| Symbols: | RING/U-box superfamily protein | chr3:21485527-21486837 FORWARD LENGTH=436)

HSP 1 Score: 78.5666 bits (192), Expect = 4.988e-15
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = -2 
Query:  323 RLVEAYFRSNPLGRPY---NH---LLQSTTDPFSSIAGVINSESQVDTAVEIDSMV--TSSMRR--SDASRLSDVDSGDS 532
            RLV+AYFR++PLGR +   NH   ++    D FSSIA VINSESQVDTAVEIDSM   TSS RR   + SR+SDVDS DS
Sbjct:  348 RLVDAYFRTHPLGRNHQEQNHHAPVVVDDRDSFSSIAAVINSESQVDTAVEIDSMALSTSSSRRRNENGSRVSDVDSADS 427
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TAIR peptide
Match: AT3G58030.3 (| Symbols: | RING/U-box superfamily protein | chr3:21485527-21486837 FORWARD LENGTH=436)

HSP 1 Score: 78.5666 bits (192), Expect = 4.988e-15
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = -2 
Query:  323 RLVEAYFRSNPLGRPY---NH---LLQSTTDPFSSIAGVINSESQVDTAVEIDSMV--TSSMRR--SDASRLSDVDSGDS 532
            RLV+AYFR++PLGR +   NH   ++    D FSSIA VINSESQVDTAVEIDSM   TSS RR   + SR+SDVDS DS
Sbjct:  348 RLVDAYFRTHPLGRNHQEQNHHAPVVVDDRDSFSSIAAVINSESQVDTAVEIDSMALSTSSSRRRNENGSRVSDVDSADS 427
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TAIR peptide
Match: AT3G58030.2 (| Symbols: | RING/U-box superfamily protein | chr3:21485527-21486837 FORWARD LENGTH=436)

HSP 1 Score: 78.5666 bits (192), Expect = 4.988e-15
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = -2 
Query:  323 RLVEAYFRSNPLGRPY---NH---LLQSTTDPFSSIAGVINSESQVDTAVEIDSMV--TSSMRR--SDASRLSDVDSGDS 532
            RLV+AYFR++PLGR +   NH   ++    D FSSIA VINSESQVDTAVEIDSM   TSS RR   + SR+SDVDS DS
Sbjct:  348 RLVDAYFRTHPLGRNHQEQNHHAPVVVDDRDSFSSIAAVINSESQVDTAVEIDSMALSTSSSRRRNENGSRVSDVDSADS 427
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TAIR peptide
Match: AT3G58030.1 (| Symbols: | RING/U-box superfamily protein | chr3:21485527-21486837 FORWARD LENGTH=436)

HSP 1 Score: 78.5666 bits (192), Expect = 4.988e-15
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = -2 
Query:  323 RLVEAYFRSNPLGRPY---NH---LLQSTTDPFSSIAGVINSESQVDTAVEIDSMV--TSSMRR--SDASRLSDVDSGDS 532
            RLV+AYFR++PLGR +   NH   ++    D FSSIA VINSESQVDTAVEIDSM   TSS RR   + SR+SDVDS DS
Sbjct:  348 RLVDAYFRTHPLGRNHQEQNHHAPVVVDDRDSFSSIAAVINSESQVDTAVEIDSMALSTSSSRRRNENGSRVSDVDSADS 427
[Close]
BLAST of Cicer_arietinum_v1_Contig3297 vs. TAIR peptide
Match: AT2G42030.1 (| Symbols: | RING/U-box superfamily protein | chr2:17539069-17540346 REVERSE LENGTH=425)

HSP 1 Score: 60.077 bits (144), Expect = 1.836e-9
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = -2 
Query:  323 RLVEAYFRSNPLGRPYNHLLQSTT-----DPFSSIAGVINSESQVDTAVEIDSMVT----SSMRR-SDASRLSDVDSGDS 532
            RL + Y  ++ LGR               D FSSI GVINSESQV+TA EI+SM+T    SS+RR  ++SR+SDVDS DS
Sbjct:  336 RLADTYLITHALGRNQEQNSSPPVGVEDRDSFSSIVGVINSESQVETAAEINSMLTVSTSSSVRRHENSSRVSDVDSADS 415
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig3297 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6TK36_SOYBN8.991e-2664.71Putative uncharacterized protein OS=Glycine max PE... [more]
B9SXK6_RICCO3.979e-1461.33Rnf5, putative OS=Ricinus communis GN=RCOM_0504480... [more]
D7LVZ3_ARALY1.600e-1362.96Zinc finger family protein OS=Arabidopsis lyrata s... [more]
Q9M2P5_ARATH7.940e-1362.50Putative uncharacterized protein T10K17.240 OS=Ara... [more]
Q8RXF2_ARATH7.940e-1362.50At3g58030 OS=Arabidopsis thaliana GN=At3g58030 PE=... [more]
B9IIA0_POPTR1.956e-1159.46Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9HAA9_POPTR1.656e-1055.95Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9SAM1_RICCO3.122e-950.00Rnf5, putative OS=Ricinus communis GN=RCOM_1104350... [more]
D7LI12_ARALY4.078e-955.00Zinc finger family protein (Fragment) OS=Arabidops... [more]
D6PQJ4_9BRAS1.713e-764.81AT3G58030-like protein (Fragment) OS=Neslia panicu... [more]
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BLAST of Cicer_arietinum_v1_Contig3297 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G58030.44.988e-1562.50| Symbols: | RING/U-box superfamily protein | chr... [more]
AT3G58030.34.988e-1562.50| Symbols: | RING/U-box superfamily protein | chr... [more]
AT3G58030.24.988e-1562.50| Symbols: | RING/U-box superfamily protein | chr... [more]
AT3G58030.14.988e-1562.50| Symbols: | RING/U-box superfamily protein | chr... [more]
AT2G42030.11.836e-950.00| Symbols: | RING/U-box superfamily protein | chr... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 39..53
score: NAcoord: 54..66
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig3297 ID=Cicer_arietinum_v1_Contig3297; Name=Cicer_arietinum_v1_Contig3297; organism=Cicer arietinum; type=contig; length=848bp
TTTCTTTTTTTGCTGAGTATAAGTTACTAACTTAGCATAGTTATTATACA
GCAATATTTAGTTTCTGAATGATAAGACTCTAAATAGCTGAACCCTTTAA
GAACATTCTTATACTTGAAGTGAACATACTCTGAAATCATCTTAAATCTA
CCAAAACTTGAAAAAAGTGAATGGTTCAAATTACAAGGCCATAACAAAGC
AAGGAGCACTTACATAGAGGTTGGAAAATTATTGTGATGTGTTACATGAT
ATGATAGAATAGTACTATTAAACTTGATCTACAATACTTTTATCAGTTCA
GACGTCTGCGCCTTGGAGCACGAGAATCTCCACTGTCGACATCAGACAAT
CTTGAAGCATCGCTTCTCCTCATAGAAGAGGTTACCATGGAATCAATTTC
TACAGCCGTGTCCACTTGACTCTCTGAATTTATGACACCAGCAATGCTTG
AAAAGGGGTCTGTCGTCGACTGAAGGAGGTGGTTGTATGGTCTGCCTAAT
GGATTGCTACGGAAATATGCCTCAACCAACCTTTGCAGAAGTCAGTGCTG
ATGAAAGAGTAGAAAGTGTTGCTCTATGTGATTGCGATCTTCGAAGCAAA
AGGGATTGCACCCTGCGGTTATCCTCTCCCAACTCAGCACCATTAACATT
GTTCTGATTTGAACCCGCAACATCATCCGGGGATGCCACAGGATTCTGCT
CTCTCCGCATGCCTGATATGTTAAAACCTACTTAGCAAGGAGTATTTCTC
TCTGCTGTTCCACGAGCATTTTCAGATTTATTTGGCTGAACCAAATCCCT
AGCTGAGATCAGCTTCCAAGAGCCGAATTATTTCTTCCCAGGGAGTGC
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