Cicer_arietinum_v1_Contig3306

Contig Overview


Name	Cicer_arietinum_v1_Contig3306
Unique Name	Cicer_arietinum_v1_Contig3306
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	918

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
FE670356	EST	FE670356:1..547 +
FD449550	EST	FD449550:304..581 +
FD449525	EST	FD449525:329..562 +
FD449554	EST	FD449554:329..597 +
FE670423	EST	FE670423:335..919 -

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
FE670356	FE670356	Cicer arietinum	EST
FD449550	FD449550	Cicer arietinum	EST
FD449525	FD449525	Cicer arietinum	EST
FD449554	FD449554	Cicer arietinum	EST
FE670423	FE670423	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. SwissProt
Match: RK21_ARATH (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.656e-43
Identity = 96/208 (46.15%), Postives = 122/208 (58.65%), Query Frame = 2

Query:   95 FGTHCSISLTSKTQXXXXXXXXXXXXXXXXXXXYNLSFQSTFSPRLRLLPKSTDSTVAAPXXXXXXXXXQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDY---PKVTMDDINL 709
            F  HC+++    +                     + S  ST      + PK  +S V A             S  +++ +     + +FAV+M+GGRQYIV PGR+L  QRLK ANV+D+I L+KVLLVGT T  YIGKPVVTNA V+A VE QGL+DKV+VFKYK KK YRR IGHRQPNTRIRI  I GYE+Y   P V + ++NL
Sbjct:   14 FSAHCNVNSRRSSTILCSLSKPSLNLAKPLTGFLSPSTASTSRTAFTVAPKFAESVVEAEPETTDIEAVVV-SDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPASPNVAVGEVNL 220

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. SwissProt
Match: RK21_SPIOL (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.465e-42
Identity = 84/120 (70.00%), Postives = 96/120 (80.00%), Query Frame = 2

Query:  338 PTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMD 697
            P   + +FAVV+IG RQYIV PGRW+  QRLKGA VNDKI L+KVLLVGT  S YIG P+VTNA V+A VEEQ LDDKVIVFKYK+KK+YRR IGHRQP TRI+I  I GYEDYP  T++
Sbjct:  117 PPPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLE 236

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. SwissProt
Match: RM21_ARATH (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.149e-22
Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 2

Query:  356 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYE 673
            +FA+V IG  Q+ V  G  +  ++LK  ++NDK+ L KVLL+G+ +   IG+P++ +A V+A VEE  LD+KV++FK KR+K+YRRT GHRQ  T++RI  I G E
Sbjct:  140 VFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. SwissProt
Match: RL21_DICTD (50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplU PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.973e-20
Identity = 54/103 (52.43%), Postives = 67/103 (65.05%), Query Frame = 2

Query:  356 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIM 664
            +F VV  GG+QY V  G  + V++LK ANV D++ L KVLLVG +    IG+P V  A V A V  Q    KVIVFK+KRKKHYRR  GHRQP T++ I  I+
Sbjct:    1 MFVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKVIAKVVRQDKYPKVIVFKFKRKKHYRRKYGHRQPYTQLSIKEIV 102

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. SwissProt
Match: RL21_DICT6 (50S ribosomal protein L21 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplU PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.029e-19
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  356 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIM 664
            +F VV  GG+QY +  G  + V++L+ ANV D++ L KVLLVG D    IG+P V  A V A V +Q    KVIVFK+KRKKHYRR  GHRQP T++ +  I+
Sbjct:    1 MFVVVETGGKQYKLSVGSTVRVEKLQ-ANVGDEVVLDKVLLVGKDDEVLIGQPYVEGAKVIAEVVKQDKYPKVIVFKFKRKKHYRRKYGHRQPYTQLSVKEIV 102

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. SwissProt
Match: RL21_SYNFM (50S ribosomal protein L21 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplU PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.454e-17
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 2

Query:  356 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIM 664
            ++AV+  GGRQY V PG+ + V++L G  V DK+ L +VLL    T   +G+PV+ N  V   + EQG   K+++FK+KR+K YR+  GHRQ  T +R+  I+
Sbjct:    1 MYAVLKSGGRQYEVRPGQVVKVEKLLG-EVGDKVTLDQVLLFSDGTDIQVGQPVLANIAVQGQIVEQGRHRKIVIFKHKRRKDYRKKQGHRQHYTAVRVEEIV 102

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. SwissProt
Match: RL21_CLOK5 (50S ribosomal protein L21 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplU PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.454e-17
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 2

Query:  356 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSI 661
            ++AVV  GG+QY V  G  + V++L+ A V+  I L KVL++  D    +GKPVV  A V A V +QG   K+IVFKYK KK YR+  GHRQP T+++I  I
Sbjct:    1 MYAVVATGGKQYKVSEGDIIYVEKLE-AEVDSTIELDKVLMINKDEGLVVGKPVVEGAKVKAKVLKQGKAKKIIVFKYKPKKDYRKKQGHRQPYTKLQIEKI 101

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. SwissProt
Match: RL21_CLOK1 (50S ribosomal protein L21 OS=Clostridium kluyveri (strain NBRC 12016) GN=rplU PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.454e-17
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 2

Query:  356 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSI 661
            ++AVV  GG+QY V  G  + V++L+ A V+  I L KVL++  D    +GKPVV  A V A V +QG   K+IVFKYK KK YR+  GHRQP T+++I  I
Sbjct:    1 MYAVVATGGKQYKVSEGDIIYVEKLE-AEVDSTIELDKVLMINKDEGLVVGKPVVEGAKVKAKVLKQGKAKKIIVFKYKPKKDYRKKQGHRQPYTKLQIEKI 101

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. SwissProt
Match: RL21_MOOTA (50S ribosomal protein L21 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplU PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.899e-17
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  356 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSI 661
            ++A++M GG+QY V  G  L V++L  A V +K+ L KVL VG      +G P V  A V A+V+ Q    K+IVFKYK KK+YRR  GHRQP T+++I  I
Sbjct:    1 MYAIIMTGGKQYRVSEGDTLRVEKLP-AEVGEKVVLDKVLAVGEGADLKVGNPYVEGAKVTASVQAQDKAPKIIVFKYKPKKNYRRKQGHRQPYTQLQIEKI 101

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. SwissProt
Match: RL21_SORC5 (50S ribosomal protein L21 OS=Sorangium cellulosum (strain So ce56) GN=rplU PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.525e-17
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 2

Query:  356 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSI 661
            ++AV+  GG+QY V  G+ L V++L G N  DK+   +VLLVG D S  IGKP+V+ A V A +  Q    K++VFK++R+K+YRR  GHRQP T ++I  I
Sbjct:    1 MYAVIKTGGKQYRVAEGQKLRVEKLVG-NAGDKVTFSEVLLVGGD-SPKIGKPLVSGASVAAEITGQDRGKKIVVFKFRRRKNYRRKNGHRQPYTELKITGI 100

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. TrEMBL
Match: C6T3Z2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 5.992e-65
Identity = 137/207 (66.18%), Postives = 151/207 (72.95%), Query Frame = 2

Query:   95 FGTHCSISLTSKTQXXXXXXXXXXXXXXXXXXXYNLSFQSTFSPR--LRLLPKSTDSTVAAPXXXXXXXXXQTDSQPTQIV--QSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDI 703
            FGTHC+IS   K                      + S++ T SPR  +  LPK ++S VA            ++ +P QIV  Q P+WE GLFAVVMIGGRQYIVHPGR L VQRLKGANVNDKIALHKVLLVGTDTSCYIGKP+VTNAVVYATVEEQGLD KVIVFKYK+KKHYRR IGHRQPNTRIRINSIMGYE+YPKVTMDDI
Sbjct:   15 FGTHCAISHDPKPLFSQPFSLNRFP---------STSYKLTLSPRSPISTLPKVSESAVAETETG------SSEPEPDQIVPAQPPSWEPGLFAVVMIGGRQYIVHPGRHLTVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPIVTNAVVYATVEEQGLDPKVIVFKYKKKKHYRRNIGHRQPNTRIRINSIMGYENYPKVTMDDI 206

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. TrEMBL
Match: C6TFY0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 7.826e-65
Identity = 137/207 (66.18%), Postives = 149/207 (71.98%), Query Frame = 2

Query:   95 FGTHCSISLTSKTQXXXXXXXXXXXXXXXXXXXYNLSFQSTFSPRLRL--LPKSTDSTVAAPXXXXXXXXXQTDSQPTQI--VQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDI 703
            FGTHC+IS   K                        S++  FSPR  L  LPK+++S VA             + +P QI   Q P+WE GLFAVVMIGGRQYIVHPGR L VQRLKGANVNDKIALHKVLLVGTDTSCYIGKP+VTNAVVYATVEEQGLD KVIVFKYK+KKHYRR IGHRQPNTRIRINSIMGYE+YPKVTMDDI
Sbjct:   15 FGTHCAISHNPKPLFSQPFNLNHFPSN---------SYKLAFSPRSPLSPLPKASESAVAETEPG------SAEPEPAQISPAQPPSWEPGLFAVVMIGGRQYIVHPGRHLTVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPIVTNAVVYATVEEQGLDPKVIVFKYKKKKHYRRNIGHRQPNTRIRINSIMGYENYPKVTMDDI 206

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. TrEMBL
Match: A9PEU7_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.652e-46
Identity = 105/174 (60.34%), Postives = 119/174 (68.39%), Query Frame = 2

Query:  200 LSFQSTFSPRLRLLPKSTDSTVAAPXXXXXXXXXQTDSQP----TQIVQ----SPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMD 697
            LS    FS R     +   S   AP          +++ P    TQIV+     PT  + +FAVVM+G RQYIV PGRWL VQRLKGANVNDKI L+KVLLVGT TS YIGKPVVTNA V+A VEEQGLD K IVFKYKRKK+YRR IGHRQPNTRIRI  I GY+D+P  T+D
Sbjct:   51 LSSPLIFSKRPTFFARPKVSESEAPVVEAETEVPVSEANPEPAATQIVEVAKEEPTKREEIFAVVMVGSRQYIVIPGRWLYVQRLKGANVNDKIVLNKVLLVGTRTSAYIGKPVVTNASVHAVVEEQGLDAKKIVFKYKRKKNYRRNIGHRQPNTRIRITGITGYQDFPVSTLD 224

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. TrEMBL
Match: B9SLE8_RICCO (50S ribosomal protein L21, putative OS=Ricinus communis GN=RCOM_0685950 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 8.136e-46
Identity = 90/125 (72.00%), Postives = 108/125 (86.40%), Query Frame = 2

Query:  323 QIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMD 697
            ++ +  T  + +FAVVM+GGRQYIV PGR++ VQRLKGANVNDK+AL+KVLLVGT T+ YIGKPVVTNAVV+A VEEQGL+ KV+VFKYK+KK+YRR IGHRQPNTRIRI  I GY+DYP VT+D
Sbjct:   89 EVAKEETKREEIFAVVMVGGRQYIVIPGRFIYVQRLKGANVNDKVALNKVLLVGTRTTTYIGKPVVTNAVVHAVVEEQGLNPKVVVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLD 213

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. TrEMBL
Match: B9IQJ0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_826253 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.063e-45
Identity = 96/130 (73.85%), Postives = 106/130 (81.54%), Query Frame = 2

Query:  320 TQIVQ----SPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMD 697
            TQIV+     PT  + +FAVVM+G RQYIV PGRWL VQRLKGANVNDKI L+KVLLVGT TS YIGKPVVTNA V+A VEEQGLD K IVFKYKRKK+YRR IGHRQPNTRIRI  I GY+D+P  T+D
Sbjct:   76 TQIVEVAKEEPTKREEIFAVVMVGSRQYIVIPGRWLYVQRLKGANVNDKIVLNKVLLVGTRTSAYIGKPVVTNASVHAVVEEQGLDAKKIVFKYKRKKNYRRNIGHRQPNTRIRITGITGYQDFPVSTLD 205

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. TrEMBL
Match: B9MW81_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_592237 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 6.888e-45
Identity = 97/158 (61.39%), Postives = 114/158 (72.15%), Query Frame = 2

Query:  242 PKSTDSTVAAPXXXXXXXXXQTDSQP--TQIVQ----SPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMD 697
            PK ++S              + + +P  TQ+V+     P   + +FAVVM+G RQYIV PGRWL VQRLKGANVNDK+ L+KVLLVGT TS YIGKPVVTNA V+A VEEQGLD K IVFKYK+KK+YRR IGHRQPNTRIRI  I GY+DYP  T+D
Sbjct:   69 PKFSESEALVVEAEPEVPVSEANPEPAATQMVEVAKEEPPKREEIFAVVMVGSRQYIVIPGRWLYVQRLKGANVNDKVNLNKVLLVGTRTSAYIGKPVVTNATVHAVVEEQGLDAKKIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPVSTLD 226

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. TrEMBL
Match: D7UC81_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00026890001 PE=4 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.450e-42
Identity = 89/136 (65.44%), Postives = 108/136 (79.41%), Query Frame = 2

Query:  302 QTDSQPTQIVQSPTWE----KGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMD 697
            + +S+  Q+V+ P  E    + +FAVVMIG RQYIV PGR++  QRLKGA+VNDKI L++VLLVGT TS YIGKPVV NA V+A VEEQGL+ KV+VFKYK+KK+YRR IGHRQPNTRIRI  I GY+D P VT+D
Sbjct:   73 EPNSEALQVVEEPPPELPKREEIFAVVMIGSRQYIVFPGRYIYTQRLKGADVNDKIILNRVLLVGTKTSTYIGKPVVPNAAVHAVVEEQGLNPKVMVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDSPAVTLD 208

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. TrEMBL
Match: D7KLX1_ARALY (50S ribosomal protein L21, chloroplast OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_473693 PE=4 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.538e-41
Identity = 94/196 (47.96%), Postives = 116/196 (59.18%), Query Frame = 2

Query:   95 FGTHCSISLTSKTQXXXXXXXXXXXXXXXXXXXYNLSFQSTFSPRLRLLPKSTDSTVAAPXXXXXXXXXQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYP 682
            F  HC+++    +                     + S  ST      + PK  +S V A             S  +++ +     + +FAVVM+GGRQYIV PGR+L  QRLK ANV+D+I L+KVLLVGT T  YIGKPVVTNA V+A VE QGL+DKV+VFKYK KK YRR IGHRQPNTRIRI  I GYE+YP
Sbjct:   14 FSAHCNVTSRRSSTILCSLSKPSLNLAKPVSGFLSPSTASTSRTAFTVAPKFAESVVEAEPETTDIEAVVV-SDVSEVTEEKAKREEIFAVVMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVENQGLNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYP 208

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. TrEMBL
Match: Q6K241_ORYSJ (Os02g0259600 protein OS=Oryza sativa subsp. japonica GN=B1178F07.15 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.146e-38
Identity = 79/109 (72.48%), Postives = 90/109 (82.57%), Query Frame = 2

Query:  356 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYP 682
            +FAVVMIG RQYIV PGR++  QRLKGANVND+I L+KVLLV T    YIG PVVTNA V+A VEEQG DDKVIVFKYK+KK Y+R +GHRQPNTR+RI  I GYED+P
Sbjct:   96 IFAVVMIGSRQYIVMPGRYIYTQRLKGANVNDQIILNKVLLVSTRDKAYIGMPVVTNAAVHAVVEEQGRDDKVIVFKYKKKKKYQRKLGHRQPNTRLRITGISGYEDFP 204

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. TrEMBL
Match: C5XZH7_SORBI (Putative uncharacterized protein Sb04g009660 OS=Sorghum bicolor GN=Sb04g009660 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.146e-38
Identity = 79/109 (72.48%), Postives = 90/109 (82.57%), Query Frame = 2

Query:  356 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYP 682
            +FAVVMIG RQYIV PGR++  QRLKGANVND+I L+KVLLV T    YIG PVVTNA V+A VEEQG DDKVIVFKYK+KK Y+R +GHRQPNTR+RI  I GYE+YP
Sbjct:   91 IFAVVMIGSRQYIVMPGRYIYTQRLKGANVNDQIILNKVLLVSTREKAYIGMPVVTNAAVHAVVEEQGRDDKVIVFKYKKKKKYQRKLGHRQPNTRLRITGISGYEEYP 199

[Close]

BLAST of Cicer_arietinum_v1_Contig3306 vs. TAIR peptide
Match: AT1G35680.1 (| Symbols: | Ribosomal protein L21 | chr1:13208777-13210246 FORWARD LENGTH=220)

HSP 1 Score: 174.481 bits (441), Expect = 7.458e-44
Identity = 96/208 (46.15%), Postives = 122/208 (58.65%), Query Frame = 2

Query:   95 FGTHCSISLTSKTQXXXXXXXXXXXXXXXXXXXYNLSFQSTFSPRLRLLPKSTDSTVAAPXXXXXXXXXQTDSQPTQIVQSPTWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDY---PKVTMDDINL 709
            F  HC+++    +                     + S  ST      + PK  +S V A             S  +++ +     + +FAV+M+GGRQYIV PGR+L  QRLK ANV+D+I L+KVLLVGT T  YIGKPVVTNA V+A VE QGL+DKV+VFKYK KK YRR IGHRQPNTRIRI  I GYE+Y   P V + ++NL
Sbjct:   14 FSAHCNVNSRRSSTILCSLSKPSLNLAKPLTGFLSPSTASTSRTAFTVAPKFAESVVEAEPETTDIEAVVV-SDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYPASPNVAVGEVNL 220

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BLAST of Cicer_arietinum_v1_Contig3306 vs. TAIR peptide
Match: AT4G30930.1 (| Symbols: NFD1 | Ribosomal protein L21 | chr4:15050170-15051630 REVERSE LENGTH=270)

HSP 1 Score: 107.457 bits (267), Expect = 1.120e-23
Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 2

Query:  356 LFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEEQGLDDKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYE 673
            +FA+V IG  Q+ V  G  +  ++LK  ++NDK+ L KVLL+G+ +   IG+P++ +A V+A VEE  LD+KV++FK KR+K+YRRT GHRQ  T++RI  I G E
Sbjct:  140 VFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig3306 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig3306 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig3306 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig3306 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RK21_ARATH	7.656e-43	46.15	50S ribosomal protein L21, chloroplastic OS=Arabid...	[more]
RK21_SPIOL	8.465e-42	70.00	50S ribosomal protein L21, chloroplastic OS=Spinac...	[more]
RM21_ARATH	1.149e-22	48.11	50S ribosomal protein L21, mitochondrial OS=Arabid...	[more]
RL21_DICTD	6.973e-20	52.43	50S ribosomal protein L21 OS=Dictyoglomus turgidum...	[more]
RL21_DICT6	2.029e-19	50.49	50S ribosomal protein L21 OS=Dictyoglomus thermoph...	[more]
RL21_SYNFM	1.454e-17	42.72	50S ribosomal protein L21 OS=Syntrophobacter fumar...	[more]
RL21_CLOK5	1.454e-17	48.04	50S ribosomal protein L21 OS=Clostridium kluyveri ...	[more]
RL21_CLOK1	1.454e-17	48.04	50S ribosomal protein L21 OS=Clostridium kluyveri ...	[more]
RL21_MOOTA	1.899e-17	47.06	50S ribosomal protein L21 OS=Moorella thermoacetic...	[more]
RL21_SORC5	5.525e-17	47.06	50S ribosomal protein L21 OS=Sorangium cellulosum ...	[more]

BLAST of Cicer_arietinum_v1_Contig3306 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6T3Z2_SOYBN	5.992e-65	66.18	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6TFY0_SOYBN	7.826e-65	66.18	Putative uncharacterized protein OS=Glycine max PE...	[more]
A9PEU7_POPTR	3.652e-46	60.34	Putative uncharacterized protein OS=Populus tricho...	[more]
B9SLE8_RICCO	8.136e-46	72.00	50S ribosomal protein L21, putative OS=Ricinus com...	[more]
B9IQJ0_POPTR	1.063e-45	73.85	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9MW81_POPTR	6.888e-45	61.39	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7UC81_VITVI	2.450e-42	65.44	Whole genome shotgun sequence of line PN40024, sca...	[more]
D7KLX1_ARALY	3.538e-41	47.96	50S ribosomal protein L21, chloroplast OS=Arabidop...	[more]
Q6K241_ORYSJ	2.146e-38	72.48	Os02g0259600 protein OS=Oryza sativa subsp. japoni...	[more]
C5XZH7_SORBI	2.146e-38	72.48	Putative uncharacterized protein Sb04g009660 OS=So...	[more]

BLAST of Cicer_arietinum_v1_Contig3306 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G35680.1	7.458e-44	46.15	\| Symbols: \| Ribosomal protein L21 \| chr1:1320877...	[more]
AT4G30930.1	1.120e-23	48.11	\| Symbols: NFD1 \| Ribosomal protein L21 \| chr4:150...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 30..42 score: NAcoord: 49..61 score
None	No IPR available	SEG	seg	seg	coord: 19..31 score: NAcoord: 46..64 score: NAcoord: 92..100 score
None	No IPR available	SUPERFAMILY	141091	L21p-like	coord: 119..222 score: 5.5
None	No IPR available	SEG	seg	seg	coord: 4..20 score
None	No IPR available	SEG	seg	seg	coord: 19..31 score
None	No IPR available	SEG	seg	seg	coord: 52..73 score
None	No IPR available	SEG	seg	seg	coord: 26..38 score
IPR001787	Ribosomal protein L21	HAMAP	MF_01363	Ribosomal_L21	coord: 119..222 score: 23
IPR001787	Ribosomal protein L21	PANTHER	PTHR21349	50S RIBOSOMAL PROTEIN L21	coord: 119..238 score: 1.3
IPR001787	Ribosomal protein L21	PFAM	PF00829	Ribosomal_L21p	coord: 120..215 score: 2.5
IPR001787	Ribosomal protein L21	TIGRFAMs	TIGR00061	L21: ribosomal protein L21	coord: 120..221 score: 8.9
IPR018258	Ribosomal protein L21, conserved site	PROSITE	PS01169	RIBOSOMAL_L21	coord: 191..213 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig3306 ID=Cicer_arietinum_v1_Contig3306; Name=Cicer_arietinum_v1_Contig3306; organism=Cicer arietinum; type=contig; length=918bp
CCGGGCTGCAGGGAGAGAGAGAGGAAGTTCTCTCCTATCTCGAAATTCCA
AAATGGCTTCTTCAACTGCAACTCTTTCCACTCTATGCGCTTCTTTCGGA
ACCCATTGCTCAATTTCCCTAACCTCCAAAACCCAATTCTCTGTTTCTCA
ACCTTTCTCCTCTTCTTTTCCTTTTCCTTCTCATAAATCATCTTACAACC
TCTCTTTTCAATCCACTTTCTCACCGCGCTTACGTCTTCTGCCCAAATCC
ACTGACTCTACAGTGGCAGCACCTGAGTCTGAGTCTGAACTGTCTTCGCT
GCAGACCGACTCTCAACCCACTCAAATTGTCCAATCTCCTACGTGGGAGA
AGGGTCTTTTTGCAGTTGTAATGATTGGTGGACGACAATATATTGTTCAC
CCCGGGCGCTGGCTTGTTGTTCAGAGGCTCAAAGGTGCTAATGTTAACGA
CAAGATTGCGCTGCATAAGGTTTTACTAGTTGGCACAGATACATCCTGCT
ACATTGGGAAACCAGTAGTAACAAATGCCGTGGTATATGCAACAGTGGAA
GAGCAGGGTTTAGATGACAAAGTGATTGTATTCAAGTACAAAAGAAAGAA
ACACTATCGCAGAACAATTGGACACAGACAGCCAAACACACGCATCCGGA
TAAATAGCATTATGGGCTATGAGGACTACCCAAAAGTTACTATGGACGAC
ATCAATTTGGAATCATGAAAATTTAGTGCACTATGCTAGTATTGTATCTT
CTTTCATCCATAATTATTAGCAATCATTTTACCATGGTTAGTTTGGCTTG
TATCAGGAATGGATTTGTTTGAATGTTTATGTAAGTTGTTAACTAACTAT
TGTATGGCATATTGTAATCTTTTGTTTCTAAATGCATTGCTATATTCCTG
TCTCCCAAAAAAAAGAAT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR001787	Ribosomal_bL21
IPR018258	Ribosomal_L21_CS

Search form

Cicer_arietinum_v1_Contig3306