Cicer_arietinum_v1_Contig3314

Contig Overview


Name	Cicer_arietinum_v1_Contig3314
Unique Name	Cicer_arietinum_v1_Contig3314
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	645

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
FE669551	EST	FE669551:90..454 +	Cicer arietinum unigene v1	n/a
FE670807	EST	FE670807:1..630 +	Cicer arietinum unigene v1	n/a
EH059109	EST	EH059109:483..645 +	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
FE669551	FE669551	Cicer arietinum	EST
FE670807	FE670807	Cicer arietinum	EST
EH059109	EH059109	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig3314 vs. TrEMBL
Match: C6SW92_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.123e-30
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = -3

Query:  347 RGTPIEKPAFVFEQPV---QQNSANENAFVIAWLGFGSVILVEGLALAASGLFPEEWDKFFVKYLYPFFIPTVFLFFVGAVAYGVLKYSQNE*ATERK 631
            R +P+EKPAFV EQ V   ++ + NE+AF++AWLGFG VILVEG+ALAASG  PE+WD+FFVK+LYP F PTVFLF  GAVAYGV KY QNE  TE+K
Sbjct:   76 RRSPLEKPAFVSEQQVGKAKEENKNESAFLLAWLGFGVVILVEGIALAASGFLPEQWDQFFVKFLYPSFTPTVFLFVAGAVAYGVFKYLQNEKITEQK 173

[Close]

BLAST of Cicer_arietinum_v1_Contig3314 vs. TrEMBL
Match: D7T252_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_22.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00018558001 PE=4 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.717e-26
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = -3

Query:  365 RGTPIEKPAF--VFEQ-PVQQNSANENAFVIAWLGFGSVILVEGLALAASGLFPEEWDKFFVKYLYPFFIPTVFLFFVGAVAYGVLKYSQNE 631
            R +P++KP F  V EQ   ++   NE+AF++AWLG G +ILVEG+ LAASG  PEEWDKFFVKYLYP F PTVFLF  G VAYGVLKY QNE
Sbjct:   78 RRSPVQKPEFLGVEEQGESKEQGRNESAFLLAWLGLGGIILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVFLFVAGTVAYGVLKYLQNE 169

[Close]

BLAST of Cicer_arietinum_v1_Contig3314 vs. TrEMBL
Match: B9R9P9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1499930 PE=4 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.051e-25
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = -3

Query:  347 RGTPIEKPAFVFEQ----PVQQNSANENAFVIAWLGFGSVILVEGLALAASGLFPEEWDKFFVKYLYPFFIPTVFLFFVGAVAYGVLKYSQNE*ATERK 631
            R +P+E+PAFV ++      ++   NE+AF++AWLG G +ILV+G+ L+ASG  P+EWDK+FVKYLYP F PTVFLF  G V YGVLKY QNE   ++K
Sbjct:   91 RRSPVERPAFVSQEIDEAKAKEQGRNESAFLLAWLGLGGIILVQGIILSASGFLPDEWDKYFVKYLYPSFTPTVFLFVAGTVTYGVLKYLQNEELKDQK 189

[Close]

BLAST of Cicer_arietinum_v1_Contig3314 vs. TrEMBL
Match: B9ICV1_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_666908 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.057e-25
Identity = 57/92 (61.96%), Postives = 66/92 (71.74%), Query Frame = -3

Query:  365 RGTPIEKPAFVFEQ---PVQQNSANENAFVIAWLGFGSVILVEGLALAASGLFPEEWDKFFVKYLYPFFIPTVFLFFVGAVAYGVLKYSQNE 631
            R  P EKP F+ ++    V++   NE AF++AWLG G +ILVEG+ LAASG  PEEWDKFFVKYLYP F PTV LF  G VAYGV KY QNE
Sbjct:   87 RRAPAEKPGFISQENEVKVKEQGRNETAFLLAWLGLGGIILVEGILLAASGFLPEEWDKFFVKYLYPSFTPTVGLFVAGTVAYGVSKYLQNE 178

[Close]

BLAST of Cicer_arietinum_v1_Contig3314 vs. TrEMBL
Match: D7MR19_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495227 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.678e-23
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = -3

Query:  365 RGTPIEKPAFVFEQ---PVQQNSANENAFVIAWLGFGSVILVEGLALAASGLFPEEWDKFFVKYLYPFFIPTVFLFFVGAVAYGVLKYSQNE 631
            R  P+EKP F+ E+     ++   NENAF++ WLG G VIL+EG+ LAASG  PEE DKFFVKY+YP F P+V LF  G  AYGVLKY QNE
Sbjct:   87 RRAPVEKPVFMSEEGAAKAEEQRRNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKFFVKYVYPVFTPSVGLFLAGTTAYGVLKYIQNE 178

[Close]

BLAST of Cicer_arietinum_v1_Contig3314 vs. TrEMBL
Match: C5XT56_SORBI (Putative uncharacterized protein Sb04g002080 OS=Sorghum bicolor GN=Sb04g002080 PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.881e-23
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = -3

Query:  365 EQPVQQNSANENAFVIAWLGFGSVILVEGLALAASGLFPEEWDKFFVKYLYPFFIPTVFLFFVGAVAYGVLKYSQNE 595
            E+ ++Q  ANENAF++AWLG G +ILVEG+ALAASG  PEE+D FFVKYLYP F PTV LF  G V YGVLKY ++E
Sbjct:   98 EEELRQRQANENAFLLAWLGLGIIILVEGIALAASGFLPEEYDSFFVKYLYPSFTPTVVLFLAGTVGYGVLKYFESE 174

[Close]

BLAST of Cicer_arietinum_v1_Contig3314 vs. TrEMBL
Match: B6UF28_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.881e-23
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = -3

Query:  365 EQPVQQNSANENAFVIAWLGFGSVILVEGLALAASGLFPEEWDKFFVKYLYPFFIPTVFLFFVGAVAYGVLKYSQNE 595
            E+ ++Q  ANENAF++AWLG G +ILVEG+ALAASG  PEE+D FFVKYLYP F PTV LF  G V YGVLKY ++E
Sbjct:   91 EEELRQRQANENAFLLAWLGLGIIILVEGIALAASGFLPEEYDSFFVKYLYPSFTPTVVLFLAGTVGYGVLKYFESE 167

[Close]

BLAST of Cicer_arietinum_v1_Contig3314 vs. TrEMBL
Match: Q9FHN0_ARATH (Similarity to endopeptidase OS=Arabidopsis thaliana GN=At5g51540 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.375e-23
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = -3

Query:  365 RGTPIEKPAFVFEQ---PVQQNSANENAFVIAWLGFGSVILVEGLALAASGLFPEEWDKFFVKYLYPFFIPTVFLFFVGAVAYGVLKYSQNE 631
            R  P+EKP F+ E+     ++   NENAF++ WLG G VIL+EG+ LAASG  PEE DK FVKY+YP F P+V LF  G  AYGVLKY QNE
Sbjct:  763 RRAPVEKPVFMSEEGAAKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTAYGVLKYIQNE 854

[Close]

BLAST of Cicer_arietinum_v1_Contig3314 vs. TrEMBL
Match: Q2V2Z4_ARATH (Putative uncharacterized protein At5g51545.1 OS=Arabidopsis thaliana GN=At5g51545 PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.375e-23
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = -3

Query:  365 RGTPIEKPAFVFEQ---PVQQNSANENAFVIAWLGFGSVILVEGLALAASGLFPEEWDKFFVKYLYPFFIPTVFLFFVGAVAYGVLKYSQNE 631
            R  P+EKP F+ E+     ++   NENAF++ WLG G VIL+EG+ LAASG  PEE DK FVKY+YP F P+V LF  G  AYGVLKY QNE
Sbjct:   88 RRAPVEKPVFMSEEGAAKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTAYGVLKYIQNE 179

[Close]

BLAST of Cicer_arietinum_v1_Contig3314 vs. TrEMBL
Match: Q0WNZ0_ARATH (Putative uncharacterized protein At5g51540 (Fragment) OS=Arabidopsis thaliana GN=At5g51540 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.375e-23
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = -3

Query:  365 RGTPIEKPAFVFEQ---PVQQNSANENAFVIAWLGFGSVILVEGLALAASGLFPEEWDKFFVKYLYPFFIPTVFLFFVGAVAYGVLKYSQNE 631
            R  P+EKP F+ E+     ++   NENAF++ WLG G VIL+EG+ LAASG  PEE DK FVKY+YP F P+V LF  G  AYGVLKY QNE
Sbjct:   72 RRAPVEKPVFMSEEGAAKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTAYGVLKYIQNE 163

[Close]

BLAST of Cicer_arietinum_v1_Contig3314 vs. TAIR peptide
Match: AT5G51545.1 (| Symbols: LPA2 | low psii accumulation2 | chr5:20936434-20937243 FORWARD LENGTH=185)

HSP 1 Score: 111.309 bits (277), Expect = 4.521e-25
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = -3

Query:  365 RGTPIEKPAFVFEQ---PVQQNSANENAFVIAWLGFGSVILVEGLALAASGLFPEEWDKFFVKYLYPFFIPTVFLFFVGAVAYGVLKYSQNE 631
            R  P+EKP F+ E+     ++   NENAF++ WLG G VIL+EG+ LAASG  PEE DK FVKY+YP F P+V LF  G  AYGVLKY QNE
Sbjct:   88 RRAPVEKPVFMSEEGAAKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGTTAYGVLKYIQNE 179

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig3314 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig3314 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig3314 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6SW92_SOYBN	4.123e-30	67.35	Putative uncharacterized protein OS=Glycine max PE...	[more]
D7T252_VITVI	4.717e-26	65.22	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9R9P9_RICCO	1.051e-25	55.56	Putative uncharacterized protein OS=Ricinus commun...	[more]
B9ICV1_POPTR	3.057e-25	61.96	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
D7MR19_ARALY	1.678e-23	58.70	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
C5XT56_SORBI	4.881e-23	66.23	Putative uncharacterized protein Sb04g002080 OS=So...	[more]
B6UF28_MAIZE	4.881e-23	66.23	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
Q9FHN0_ARATH	6.375e-23	57.61	Similarity to endopeptidase OS=Arabidopsis thalian...	[more]
Q2V2Z4_ARATH	6.375e-23	57.61	Putative uncharacterized protein At5g51545.1 OS=Ar...	[more]
Q0WNZ0_ARATH	6.375e-23	57.61	Putative uncharacterized protein At5g51540 (Fragme...	[more]

BLAST of Cicer_arietinum_v1_Contig3314 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G51545.1	4.521e-25	57.61	\| Symbols: LPA2 \| low psii accumulation2 \| chr5:20...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 3..16 score
None	No IPR available	SEG	seg	seg	coord: 30..51 score: NAcoord: 61..80 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig3314 ID=Cicer_arietinum_v1_Contig3314; Name=Cicer_arietinum_v1_Contig3314; organism=Cicer arietinum; type=contig; length=645bp
GGCTGCAGGAATTCGAATTCAACAAAGTTGTTCTATAGTTTGATGACTAT
ACCCACATGAGAATGTTCAAAATCCAAATAGAACCAAGATATAAAGTTTC
ATAGCCGCTAAAAAACAAGTGATCAAATTAATTACAACATGAGATTGAAT
CTCTTTCAAAAATCTTTGAACCTATAATGGCATAAGGGGTTGCTGATTAC
GATCCAACAAAAATTGTTCACACATCATTGTCATCTTCCATTCTGATAAA
TCAAATACAGAAAAGGGATTGCAATCATTGTTACTCATGGTAGTATCTCC
CTGTAGGAACATCAGGTTTCTAACATTATTAACATCAAACACGCTATTTC
CGCTCCGTGGCTTACTCATTCTGCGAATATTTTAACACACCATATGCTAC
TGCTCCAACAAAAAACAAAAAAACTGTAGGAATAAAAAATGGATAGAGAT
ACTTAACAAAGAACTTGTCCCATTCTTCTGGAAATAATCCTGAAGCTGCA
AGAGCAAGACCCTCAACAAGAATAACAGAACCAAAACCAAGCCATGCAAT
AACAAAAGCGTTTTCGTTTGCGCTATTCTGTTGAACCGGTTGTTCAAAAA
CGAAAGCGGGTTTTTCAATTGGAGTACCTCGGCCGCGACCACGCT

Search form

Cicer_arietinum_v1_Contig3314