Cicer_arietinum_v1_Contig335

Contig Overview


Name	Cicer_arietinum_v1_Contig335
Unique Name	Cicer_arietinum_v1_Contig335
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	610

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
HO064011	EST	HO064011:1..610 +
HO063214	EST	HO063214:1..610 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
HO064011	HO064011	Cicer arietinum	EST
HO063214	HO063214	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. SwissProt
Match: CB5_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.470e-44
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = -1

Query:   71 YYRIINGLELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNNLLTVIAGNVERAPTL 352
            YYRI NGL+ EDKLHPGGPFDPLGLA DP+Q A+LKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVEN+AKHLSDPFGNNLLTVIAG  ERAPTL
Sbjct:  187 YYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. SwissProt
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.012e-24
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = -1

Query:  116 YRIINGL--ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 349
            YR+  G   E+ D ++PGG FDPLGLA+DPD  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN+A HL+DP  NN
Sbjct:  187 YRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. SwissProt
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.934e-24
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = -1

Query:  116 YRIINGL--ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 349
            YR+  G   E+ D L+PGG FDPLGLA DP+++A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN+A HL+DP  NN
Sbjct:  173 YRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. SwissProt
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.138e-24
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = -1

Query:  116 YRIINGL--ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 349
            YRI  G   E+ D L+PGG FDPLGLA+DP+  A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN+A HLSDP  NN
Sbjct:  177 YRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 256

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. SwissProt
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.711e-24
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = -1

Query:  116 YRIINGL--ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 349
            YRI  G   E+ D L+PGG FDPLGLA+DP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN+A HL+DP  NN
Sbjct:  176 YRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. SwissProt
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.711e-24
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = -1

Query:  116 YRIINGL--ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 349
            YRI  G   E+ D ++PGG FDPLGLA DP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN+A HL+DP  NN
Sbjct:  183 YRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. SwissProt
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.711e-24
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = -1

Query:  116 YRIINGL--ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 349
            YRI  G   E+ D L+PGG FDPLGLA+DP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN+A HL+DP  NN
Sbjct:  176 YRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. SwissProt
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.711e-24
Identity = 52/80 (65.00%), Postives = 64/80 (80.00%), Query Frame = -1

Query:  116 YRIINGL--ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 349
            YR+  G   E+ D ++PGG FDPLGLA+DPD  A +KVKEIKNGRLAMF+M GFF+QA VTG+GP+EN+A HL+DP  NN
Sbjct:  187 YRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. SwissProt
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.711e-24
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = -1

Query:  116 YRIINGL--ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 349
            YRI  G   E+ D L+PGG FDPLGLA+DP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN+A HL+DP  NN
Sbjct:  170 YRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. SwissProt
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.711e-24
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = -1

Query:  116 YRIINGL--ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 349
            YRI  G   E+ D L+PGG FDPLGLA+DP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN+A HL+DP  NN
Sbjct:  174 YRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TrEMBL
Match: A5B523_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023565 PE=4 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.842e-45
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = -1

Query:   71 YYRIINGLELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNNLLTVIAGNVERAPTL 352
            YYRIINGL+LEDKLHPGGPFDPLGLANDPDQAA+LKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVEN+A HLSDPFGNNLLTVIAG  ERAPTL
Sbjct:  197 YYRIINGLDLEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAAHLSDPFGNNLLTVIAGTAERAPTL 290

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TrEMBL
Match: C6TCH6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.396e-44
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = -1

Query:   71 YYRIINGLELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNNLLTVIAGNVERAPTL 352
            YYRIINGL+LEDKLHPGGPFDPLGLA DPDQAA+LKVKEIKNGRLAMFAMLGF+ QAYVTGEGPVEN+AKHLSDPFGNNLLTVIAG+ ERAPTL
Sbjct:  194 YYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 287

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TrEMBL
Match: B9S1T5_RICCO (Chlorophyll A/B binding protein, putative OS=Ricinus communis GN=RCOM_0868050 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.396e-44
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = -1

Query:   71 YYRIINGLELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNNLLTVIAGNVERAPTL 352
            YYRIINGL+LEDKLHPGGPFDPLGLA DPDQAAILKVKEIKNGRLAMFAMLGF+ QAYVTGEGPVEN+AKHLSDPFGNNLLTV+AG+ ERAPTL
Sbjct:  199 YYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVLAGSAERAPTL 292

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TrEMBL
Match: C6TKE6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.565e-44
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = -1

Query:   71 YYRIINGLELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNNLLTVIAGNVERAPTL 352
            YYRIINGL  EDKLHPGGPFDPLGLANDPDQAA+LKVKEIKNGRLAMFAMLGF+ QAYVTGEGPVEN+AKHLSDPFGNNLLTVI+G+ ERAPTL
Sbjct:  196 YYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGSAERAPTL 289

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TrEMBL
Match: Q0PWS5_TOBAC (Chloroplast pigment-binding protein CP26 OS=Nicotiana tabacum GN=Lhcb5 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.201e-43
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = -1

Query:   71 YYRIINGLELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNNLLTVIAGNVERAPTL 352
            YYRI NGL+LEDKLHPGGPFDPLGLA DPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTG+GPVEN+A HLSDPFGNNLLTVIAG  ERAPTL
Sbjct:  192 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGKGPVENLAAHLSDPFGNNLLTVIAGTAERAPTL 285

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TrEMBL
Match: D7LY42_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489877 PE=4 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.404e-43
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = -1

Query:   71 YYRIINGLELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNNLLTVIAGNVERAPTL 352
            YYRI NGL+ EDKLHPGGPFDPLGLA DP+Q A+LKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVEN+AKHLSDPFGNNLLTVIAG  ERAPTL
Sbjct:  187 YYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TrEMBL
Match: Q53N83_ORYSJ (Chlorophyll A-B binding protein, expressed OS=Oryza sativa subsp. japonica GN=Os11g0242800 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.364e-43
Identity = 83/94 (88.30%), Postives = 91/94 (96.81%), Query Frame = -1

Query:   71 YYRIINGLELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNNLLTVIAGNVERAPTL 352
            YYRIINGL+LEDKLHPGGPFDPLGLA+DPDQAA+LKVKEIKNGRLAMF+MLGFFIQAYVTGEGPVEN++KHLSDPFGNNLLTVI+G  ER P+L
Sbjct:  190 YYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 283

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TrEMBL
Match: Q53N82_ORYSJ (Chlorophyll A-B binding protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os11g13890 PE=4 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.364e-43
Identity = 83/94 (88.30%), Postives = 91/94 (96.81%), Query Frame = -1

Query:   71 YYRIINGLELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNNLLTVIAGNVERAPTL 352
            YYRIINGL+LEDKLHPGGPFDPLGLA+DPDQAA+LKVKEIKNGRLAMF+MLGFFIQAYVTGEGPVEN++KHLSDPFGNNLLTVI+G  ER P+L
Sbjct:  132 YYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 225

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TrEMBL
Match: B7EX82_ORYSJ (cDNA clone:001-041-F05, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.364e-43
Identity = 83/94 (88.30%), Postives = 91/94 (96.81%), Query Frame = -1

Query:   71 YYRIINGLELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNNLLTVIAGNVERAPTL 352
            YYRIINGL+LEDKLHPGGPFDPLGLA+DPDQAA+LKVKEIKNGRLAMF+MLGFFIQAYVTGEGPVEN++KHLSDPFGNNLLTVI+G  ER P+L
Sbjct:   66 YYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 159

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TrEMBL
Match: A6MZY2_ORYSI (Chloroplast chlorophyll a-b binding proteinr (Fragment) OS=Oryza sativa subsp. indica PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.364e-43
Identity = 83/94 (88.30%), Postives = 91/94 (96.81%), Query Frame = -1

Query:   71 YYRIINGLELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNNLLTVIAGNVERAPTL 352
            YYRIINGL+LEDKLHPGGPFDPLGLA+DPDQAA+LKVKEIKNGRLAMF+MLGFFIQAYVTGEGPVEN++KHLSDPFGNNLLTVI+G  ER P+L
Sbjct:  108 YYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 201

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TAIR peptide
Match: AT4G10340.1 (| Symbols: LHCB5 | light harvesting complex of photosystem II 5 | chr4:6408200-6409496 FORWARD LENGTH=280)

HSP 1 Score: 177.563 bits (449), Expect = 4.716e-45
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = -1

Query:   71 YYRIINGLELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNNLLTVIAGNVERAPTL 352
            YYRI NGL+ EDKLHPGGPFDPLGLA DP+Q A+LKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVEN+AKHLSDPFGNNLLTVIAG  ERAPTL
Sbjct:  187 YYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TAIR peptide
Match: AT1G29930.1 (| Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267)

HSP 1 Score: 109.768 bits (273), Expect = 1.208e-24
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = -1

Query:  116 ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 328
            E ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN+A HL+DP  NN
Sbjct:  185 EAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TAIR peptide
Match: AT1G29920.1 (| Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-binding protein 2 | chr1:10475089-10475892 REVERSE LENGTH=267)

HSP 1 Score: 109.768 bits (273), Expect = 1.208e-24
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = -1

Query:  116 ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 328
            E ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN+A HL+DP  NN
Sbjct:  185 EAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TAIR peptide
Match: AT1G29910.1 (| Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B binding protein 3 | chr1:10472443-10473246 REVERSE LENGTH=267)

HSP 1 Score: 109.768 bits (273), Expect = 1.208e-24
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = -1

Query:  116 ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 328
            E ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN+A HL+DP  NN
Sbjct:  185 EAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TAIR peptide
Match: AT2G34420.1 (| Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265)

HSP 1 Score: 108.997 bits (271), Expect = 2.060e-24
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = -1

Query:  116 ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 328
            E ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN+A HL+DP  NN
Sbjct:  183 EAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TAIR peptide
Match: AT2G34430.1 (| Symbols: LHB1B1, LHCB1.4 | light-harvesting chlorophyll-protein complex II subunit B1 | chr2:14524818-14525618 FORWARD LENGTH=266)

HSP 1 Score: 108.997 bits (271), Expect = 2.060e-24
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = -1

Query:  116 ELEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 328
            E ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN+A HL+DP  NN
Sbjct:  184 EAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TAIR peptide
Match: AT2G05070.1 (| Symbols: LHCB2.2, LHCB2 | photosystem II light harvesting complex gene 2.2 | chr2:1799436-1800329 REVERSE LENGTH=265)

HSP 1 Score: 100.908 bits (250), Expect = 5.610e-22
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = -1

Query:  116 DKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 319
            D L+PGG FDPL LA DP+  + LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN+  HL+DP  NN
Sbjct:  186 DPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TAIR peptide
Match: AT2G05100.1 (| Symbols: LHCB2.1, LHCB2 | photosystem II light harvesting complex gene 2.1 | chr2:1823449-1824331 REVERSE LENGTH=265)

HSP 1 Score: 100.908 bits (250), Expect = 5.610e-22
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = -1

Query:  116 DKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 319
            D L+PGG FDPL LA DP+  + LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN+  HL+DP  NN
Sbjct:  186 DPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TAIR peptide
Match: AT3G27690.1 (| Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II light harvesting complex gene 2.3 | chr3:10256002-10256921 FORWARD LENGTH=266)

HSP 1 Score: 100.138 bits (248), Expect = 9.569e-22
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = -1

Query:  116 DKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 319
            D L+PGG FDPL LA DP+  + LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN+  H++DP  NN
Sbjct:  187 DPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254

[Close]

BLAST of Cicer_arietinum_v1_Contig335 vs. TAIR peptide
Match: AT5G54270.1 (| Symbols: LHCB3, LHCB3*1 | light-harvesting chlorophyll B-binding protein 3 | chr5:22038424-22039383 FORWARD LENGTH=265)

HSP 1 Score: 95.5153 bits (236), Expect = 2.357e-20
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = -1

Query:  116 INGLELEDKLHPGGP-FDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENIAKHLSDPFGNN 340
            ++G+   + L+PGG  FDPLGLA+DP   A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN+  HL +P  NN
Sbjct:  178 LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig335 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig335 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig335 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig335 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
CB5_ARATH	4.470e-44	89.36	Chlorophyll a-b binding protein CP26, chloroplasti...	[more]
CB2A_PINSY	3.012e-24	66.25	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]
CB23_APIGR	3.934e-24	65.00	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB28_PEA	5.138e-24	67.50	Chlorophyll a-b binding protein 8, chloroplastic O...	[more]
CB2G_SOLLC	6.711e-24	67.50	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]
CB2B_PINSY	6.711e-24	66.25	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB2A_SPIOL	6.711e-24	67.50	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB2A_PYRPY	6.711e-24	65.00	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB22_ORYSJ	6.711e-24	67.50	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_ORYSJ	6.711e-24	67.50	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]

BLAST of Cicer_arietinum_v1_Contig335 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
A5B523_VITVI	6.842e-45	93.62	Putative uncharacterized protein OS=Vitis vinifera...	[more]
C6TCH6_SOYBN	3.396e-44	91.49	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9S1T5_RICCO	3.396e-44	91.49	Chlorophyll A/B binding protein, putative OS=Ricin...	[more]
C6TKE6_SOYBN	7.565e-44	90.43	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q0PWS5_TOBAC	2.201e-43	91.49	Chloroplast pigment-binding protein CP26 OS=Nicoti...	[more]
D7LY42_ARALY	6.404e-43	89.36	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q53N83_ORYSJ	8.364e-43	88.30	Chlorophyll A-B binding protein, expressed OS=Oryz...	[more]
Q53N82_ORYSJ	8.364e-43	88.30	Chlorophyll A-B binding protein, expressed OS=Oryz...	[more]
B7EX82_ORYSJ	8.364e-43	88.30	cDNA clone:001-041-F05, full insert sequence OS=Or...	[more]
A6MZY2_ORYSI	8.364e-43	88.30	Chloroplast chlorophyll a-b binding proteinr (Frag...	[more]

BLAST of Cicer_arietinum_v1_Contig335 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT4G10340.1	4.716e-45	89.36	\| Symbols: LHCB5 \| light harvesting complex of pho...	[more]
AT1G29930.1	1.208e-24	70.42	\| Symbols: CAB1, AB140, CAB140, LHCB1.3 \| chloroph...	[more]
AT1G29920.1	1.208e-24	70.42	\| Symbols: CAB2, AB165, LHCB1.1 \| chlorophyll A/B-...	[more]
AT1G29910.1	1.208e-24	70.42	\| Symbols: CAB3, AB180, LHCB1.2 \| chlorophyll A/B ...	[more]
AT2G34420.1	2.060e-24	70.42	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light ...	[more]
AT2G34430.1	2.060e-24	70.42	\| Symbols: LHB1B1, LHCB1.4 \| light-harvesting chlo...	[more]
AT2G05070.1	5.610e-22	66.18	\| Symbols: LHCB2.2, LHCB2 \| photosystem II light h...	[more]
AT2G05100.1	5.610e-22	66.18	\| Symbols: LHCB2.1, LHCB2 \| photosystem II light h...	[more]
AT3G27690.1	9.569e-22	64.71	\| Symbols: LHCB2.4, LHCB2.3, LHCB2 \| photosystem I...	[more]
AT5G54270.1	2.357e-20	61.84	\| Symbols: LHCB3, LHCB3*1 \| light-harvesting chlor...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 23..49 score
None	No IPR available	SEG	seg	seg	coord: 56..71 score
None	No IPR available	SEG	seg	seg	coord: 12..27 score
None	No IPR available	GENE3D	1.10.3460.10	no description	coord: 28..101 score: 1.6
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 28..109 score: 3.4
None	No IPR available	SEG	seg	seg	coord: 38..64 score: NAcoord: 68..79 score
IPR001593	Ribosomal protein S3Ae	PFAM	PF01015	Ribosomal_S3Ae	coord: 20..62 score: 2.8
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 20..103 score: 1
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 30..76 score: 3.4

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig335 ID=Cicer_arietinum_v1_Contig335; Name=Cicer_arietinum_v1_Contig335; organism=Cicer arietinum; type=contig; length=610bp
TAGCGTGGTCGCGGCCGAGGTACATTCAACTTTCTGAAGAAAAAAAAACA
TGGAAAGATGATTGATTTCAAAGAGTTGGAGCCCTCTCAACATTTCCAGC
AATGACGGTAAGCAAGTTGTTTCCAAAAGGGTCACTGAGATGTTTAGCAA
TATTCTCAACAGGACCTTCTCCTGTCACATAAGCTTGGATGAAGAAACCA
AGCATGGCAAACATTGCAAGTCTTCCATTCTTGATTTCCTTCACCTTTAG
AATTGCAGCTTGGTCTGGATCATTTGCTAGTCCCAATGGATCAAATGGAC
CACCTGGATGAAGCTTGTCTTCCAATTCCAGTCCATTGATAATTCTGTAG
TACGGGAAACAAGGGTTTTGCCAACATTCTTGACTTGGAAGACAGAAGGA
GCCTTGATATCATACCAATCCTTCTTGGAAAAGGGATCGGCGGCTTTCTT
CTTGCCTCCCTTCTTTCCCTTGGAAATTCTCTTGTTCTTGCCGACCGCCA
TGGTTGTTGTTTGTTCTTCTTCAACCTACCGTTGCGGCTACTTGCTCTGA
CGGCAGGGGGAACAAATGAAACCCTAATGTACCTGCCCGGGCGGCCGCCC
GGGCAGGTAC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR001593	Ribosomal_eS1
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind

Search form

Cicer_arietinum_v1_Contig335