Cicer_arietinum_v1_Contig3370

Contig Overview
NameCicer_arietinum_v1_Contig3370
Unique NameCicer_arietinum_v1_Contig3370
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length596
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
FE670644ESTFE670644:1..509 +Cicer arietinum unigene v1n/a
GR915454ESTGR915454:130..511 -Cicer arietinum unigene v1n/a
GR916965ESTGR916965:132..511 -Cicer arietinum unigene v1n/a
HO062498ESTHO062498:162..596 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FE670644FE670644Cicer arietinumEST
GR915454GR915454Cicer arietinumEST
GR916965GR916965Cicer arietinumEST
HO062498HO062498Cicer arietinumEST


Homology
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BLAST of Cicer_arietinum_v1_Contig3370 vs. TAIR peptide
Match: AT1G71980.1 (| Symbols: | Protease-associated (PA) RING/U-box zinc finger family protein | chr1:27098250-27099881 FORWARD LENGTH=448)

HSP 1 Score: 53.5286 bits (127), Expect = 9.796e-8
Identity = 31/75 (41.33%), Postives = 39/75 (52.00%), Query Frame = 2 
Query:   71 SQRSLASHMNSPRSMGYPXXXXXXXXXXXXHIPSPSNASVSFMIGSSSHHQHPLRYXXXXXXXXXXXXXXXLPEC 295
            SQRS  SHM SP+S+GYP            + PSPSNAS + M GSS++  +PLRY               LP+C
Sbjct:  375 SQRSYISHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPA-MAGSSNYPLNPLRYSESAGTFSPYASANSLPDC 448
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig3370 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G71980.19.796e-841.33| Symbols: | Protease-associated (PA) RING/U-box ... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 24..35
score: NAcoord: 62..76
score
NoneNo IPR availableSEGsegsegcoord: 1..18
score
NoneNo IPR availableSEGsegsegcoord: 50..61
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig3370 ID=Cicer_arietinum_v1_Contig3370; Name=Cicer_arietinum_v1_Contig3370; organism=Cicer arietinum; type=contig; length=596bp
ATTCCTAAGATCTACGGAGCTACGGCTGACACTTAGGGATGGGGATTGAC
GGTAAGACCTTAGAGATGCATCCCAAAGATCTCTAGCTTCACACATGAAT
TCACCACGTTCCATGGGTTATCCATCTTTGTCATCTCTTAACTCAAGGTA
CTTGTCTTCACACATTCCAAGTCCAAGTAATGCCTCAGTAAGTTTCATGA
TCGGTTCATCCAGTCATCATCAGCATCCACTCCGTTATAGTGAGTCAGCC
GCAAGCTTCTCATCGTTTGCGTCGGCCAACTCCCTTCCGGAATGTTGAGT
TGTGTAATTTGATTTTATCATATGATTGTGACGTCTGCTCATTTGAACCG
ATGATTGCCAACTCATTGAACTAAAGAGTGGCCAAACGACAACCGTCAGT
CTATTTCCATGTAACACTTCGGCATTCCCTACCTCCGTTCCGTGTCTCTC
CTCTGGCAAACGACTTCCTTGTTGGCATATCCGGTGTACATTATAACATC
TTTGTGATGTTAGTTTTCTTTACTTTACATGTGGTGGCTAAGGTTCTTAC
ACTTTCAGGTTGGTGAGCTTTGAGTACCTGCCCGGGCGGCCGCTCG
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