Cicer_arietinum_v1_Contig3546

Contig Overview
NameCicer_arietinum_v1_Contig3546
Unique NameCicer_arietinum_v1_Contig3546
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length964
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
FE669517ESTFE669517:1..543 +
FD449528ESTFD449528:466..668 +
FD449547ESTFD449547:427..699 +
FE672793ESTFE672793:401..810 +
FE668803ESTFE668803:364..892 +
FE672877ESTFE672877:368..878 +
FE670168ESTFE670168:347..867 +
FE669859ESTFE669859:507..967 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FE669517FE669517Cicer arietinumEST
FD449528FD449528Cicer arietinumEST
FD449547FD449547Cicer arietinumEST
FE672793FE672793Cicer arietinumEST
FE668803FE668803Cicer arietinumEST
FE672877FE672877Cicer arietinumEST
FE670168FE670168Cicer arietinumEST
FE669859FE669859Cicer arietinumEST


Homology
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BLAST of Cicer_arietinum_v1_Contig3546 vs. TrEMBL
Match: C0IN06_CICAR (Proline-rich family protein OS=Cicer arietinum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.122e-7
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:  418 MGGGKDKHDESDKGVFSSLAHGVANAAT 501
            MGGGKDKHDESDKGVFSSLAHGVANAAT
Sbjct:    1 MGGGKDKHDESDKGVFSSLAHGVANAAT 28
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig3546 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 1
Match NameE-valueIdentityDescription
C0IN06_CICAR2.122e-7100.00Proline-rich family protein OS=Cicer arietinum GN=... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 20..39
score
NoneNo IPR availableSEGsegsegcoord: 30..82
score: NAcoord: 90..122
score: NAcoord: 124..183
score
NoneNo IPR availableSEGsegsegcoord: 23..36
score
NoneNo IPR availableSEGsegsegcoord: 52..62
score: NAcoord: 130..148
score
NoneNo IPR availableSEGsegsegcoord: 26..45
score
NoneNo IPR availableSEGsegsegcoord: 33..43
score
NoneNo IPR availableSEGsegsegcoord: 12..33
score
NoneNo IPR availableSEGsegsegcoord: 47..62
score
NoneNo IPR availableSEGsegsegcoord: 8..26
score
NoneNo IPR availableSEGsegsegcoord: 7..19
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig3546 ID=Cicer_arietinum_v1_Contig3546; Name=Cicer_arietinum_v1_Contig3546; organism=Cicer arietinum; type=contig; length=964bp
GGCTGCAGGATTCGAATTCCTCTCTTATTATTCAAGGTCAGTTCCCTTAT
CTTTGTTTCCTCACTTCTCTATTCAATCACTCTTTATTCATCATTCAATT
TTTATTCTTTATTTTTTGTCTGCAACATCAATTTCATTATTTTACACAAA
TTTAAAAATTAATTGAATGTAATCAAGGTAATGATTTTTAAAAAATAATT
AATCCAATGTAATCAAGGTGACAGTTTCGTGTTGGCGACACGTGTCGGAC
ATTAGGACACGCCTTTGATCAGATGCGTTGTCCTACTATGCAAATTTGCC
TTGAATTGGATTGGGGATTCCATATTTCCATGTTTTGTGTTTATTATCTT
ATTGTGTTGTGACAATTTTGTTTGTAATTGTGAATGGTGTGAAGGTGTTT
GTTGTTTTATTTGAAAGATGGGAGGTGGTAAGGATAAGCATGATGAATCT
GACAAAGGGGTTTTTTCAAGCCTTGCTCATGGTGTAGCTAATGCTGCTAC
ACATGGAGGAGGACATGGTTATCCACCTGGGGCATACCCTCCACAACATG
GGTATCCTCCACAACAAGGATACCCTCCACAACAAGGTTATCCACCATCT
GGGTATCCTCCACAACAAGGATACCCTCCACAAGGCTACCCACCTGCTGG
TTATCCTGCTTCATCTGGTCATAATGCTCAAGGGTCTCATGGACATGGCG
GTCCCGGTATGGGAGCAATGCTTGCCGGGGGTGCAGCTGCCGCCGCCGCT
GCTTATGGTGCTCACCATATCTCCCACGGCTCTCAAGGTCACTATCCACA
AGGTGGATACGCACCAGGTGGCTATGCACAAGGTGGATATGCACATGGTG
GTGGTCACATGCCTCACGGAAAATTCAAGCAGCATGGCAAGTTCAAGCAG
GGAGAGCATGGCAAGTTCAACCATGGAAAGTTTGGCAAGCATGGTGGAGG
CAAGCATGGGTTCA
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