Cicer_arietinum_v1_Contig3566

Contig Overview
NameCicer_arietinum_v1_Contig3566
Unique NameCicer_arietinum_v1_Contig3566
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length681
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
FE668635ESTFE668635:1..548 +
HO065689ESTHO065689:8..592 +
FE672147ESTFE672147:81..681 -
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FE668635FE668635Cicer arietinumEST
HO065689HO065689Cicer arietinumEST
FE672147FE672147Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig3566 vs. TrEMBL
Match: C6SVA3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.923e-37
Identity = 87/124 (70.16%), Postives = 100/124 (80.65%), Query Frame = -2 
Query:  147 MASASVATALPLRSATQNSLKRPSSESFFRPLPVKQPKRVTH-----SKSKLEIHASLKQKAVTGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLTAIFGAVFGVANFDPVKR 503
            MASASV  AL L S T N+  +PSSE+FFRPLP++QPKR        S SK +I+ASLK+KAV GLTAAS+TASMV+PEVAHAAG + SPSL+NFLLSIFAGG VL AIFGAV GV+NFDPVKR
Sbjct:    1 MASASVPMALSLGSVTNNN--KPSSEAFFRPLPLRQPKRTLFTTKAVSNSKPQINASLKEKAVAGLTAASVTASMVVPEVAHAAGYEFSPSLKNFLLSIFAGGVVLAAIFGAVIGVSNFDPVKR 122
[Close]
BLAST of Cicer_arietinum_v1_Contig3566 vs. TrEMBL
Match: C6TBW1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.662e-36
Identity = 84/124 (67.74%), Postives = 98/124 (79.03%), Query Frame = -2 
Query:  147 MASASVATALPLRSATQNSLKRPSSESFFRPLPVKQPKRVTHS-----KSKLEIHASLKQKAVTGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLTAIFGAVFGVANFDPVKR 503
            MASASV  A  L S   N+  +PSSE+FFRPLP++QPKR   +      SK +I+ASLK+KAV GLTAAS+TASMV+PEVAHAAG + SPSL+NFLLSIFAGG VL AIFGAV GV+NFDPVKR
Sbjct:    1 MASASVPMAFSLSSVINNN--KPSSEAFFRPLPLRQPKRTLFTTKAVANSKAQINASLKEKAVAGLTAASVTASMVVPEVAHAAGYEFSPSLKNFLLSIFAGGFVLVAIFGAVIGVSNFDPVKR 122
[Close]
BLAST of Cicer_arietinum_v1_Contig3566 vs. TrEMBL
Match: B9RK19_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.395e-34
Identity = 84/123 (68.29%), Postives = 101/123 (82.11%), Query Frame = -2 
Query:  144 MASAS-VATALPLRSATQNSLKRPSSESFFRPLPVKQPKRVTHSKS--KLEIHASLKQKAVTGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLTAIFGAVFGVANFDPVKRA 503
            MAS S V+ A+P+ SA+Q   K PSSE+FF+PLP++Q K V  SKS  K ++ ASLK+KA+TGLTAA+LTASMVIPEVA AAGS +SPSL+NFLLSI AGG VLTAI GA+ GVANFDPVKR+
Sbjct:    1 MASTSAVSMAMPITSASQK--KVPSSEAFFKPLPLRQSKAVMASKSNGKFQVKASLKEKAITGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDPVKRS 121
[Close]
BLAST of Cicer_arietinum_v1_Contig3566 vs. TrEMBL
Match: B9HD21_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_832074 PE=4 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.105e-31
Identity = 76/123 (61.79%), Postives = 97/123 (78.86%), Query Frame = -2 
Query:  144 ASVATALPLRSATQNSLKRP-SSESFFRPLPVKQPKRV-----THSKSKLEIHASLKQKAVTGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLTAIFGAVFGVANFDPVKRA 494
            ASV+ A+PL SA+Q  L++P +S+SF +PLP++    V     + S+++LE+ ASLK+KAVTGLTAA+LTASMVIPEVA AAG  +SPSL+NFLLSI AGG V  AI GAV GV+NFDPVKR+
Sbjct:    2 ASVSMAMPLASASQKRLEQPPNSQSFLKPLPIRPSMEVGLSTKSKSRARLEVQASLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGVVAVAIIGAVLGVSNFDPVKRS 124
[Close]
BLAST of Cicer_arietinum_v1_Contig3566 vs. TrEMBL
Match: D7STV7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00035449001 PE=4 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.556e-30
Identity = 79/122 (64.75%), Postives = 95/122 (77.87%), Query Frame = -2 
Query:  147 ASVATALPLRSATQNSL-KRPSSESFFRPLPVKQPKRVTHSK-----SKLEIHASLKQKAVTGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLTAIFGAVFGVANFDPVKR 494
            ASV+ A+ L SA+QN L +RP+SE+FF+PL VK  K+    K     S+LE+ ASLK+KA+TGLTAA+LTASMV+PE A AA S +SPSL+NFLLSI AGG VL AI GAV GVANFDPVKR
Sbjct:    2 ASVSMAMRLTSASQNRLLQRPTSEAFFQPLQVKPSKKAVAVKPKSRGSRLEVKASLKEKAITGLTAAALTASMVLPEAAEAA-SGVSPSLKNFLLSIVAGGVVLGAIVGAVIGVANFDPVKR 122
[Close]
BLAST of Cicer_arietinum_v1_Contig3566 vs. TrEMBL
Match: A9PJ86_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.556e-30
Identity = 77/122 (63.11%), Postives = 94/122 (77.05%), Query Frame = -2 
Query:  147 MASAS-VATALPLRSATQNSLKRPSSESFFRPLPVKQPKRVTHSKS--KLEIHASLKQKAVTGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLTAIFGAVFGVANFDPVKR 503
            MAS S V+ ALPL  A+Q  +  P+SE+FF+PLP +  K ++ SKS  + ++ ASLK+K VTGLTA +LTASMVIPEVA AAG+  SPSL+NFLLSI AGG VL AI GAV GV+NFDPVKR
Sbjct:    1 MASTSAVSMALPLTYASQKRV--PASEAFFKPLPARPSKAMSASKSSGRFQVKASLKEKLVTGLTAGALTASMVIPEVAEAAGAGTSPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVKR 120
[Close]
BLAST of Cicer_arietinum_v1_Contig3566 vs. TrEMBL
Match: A9PE66_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.556e-30
Identity = 77/122 (63.11%), Postives = 94/122 (77.05%), Query Frame = -2 
Query:  147 MASAS-VATALPLRSATQNSLKRPSSESFFRPLPVKQPKRVTHSKS--KLEIHASLKQKAVTGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLTAIFGAVFGVANFDPVKR 503
            MAS S V+ ALPL  A+Q  +  P+SE+FF+PLP +  K ++ SKS  + ++ ASLK+K VTGLTA +LTASMVIPEVA AAG+  SPSL+NFLLSI AGG VL AI GAV GV+NFDPVKR
Sbjct:    1 MASTSAVSMALPLTYASQKRV--PASEAFFKPLPARPSKAMSASKSSGRFQVKASLKEKLVTGLTAGALTASMVIPEVAEAAGAGASPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVKR 120
[Close]
BLAST of Cicer_arietinum_v1_Contig3566 vs. TrEMBL
Match: B9MSX5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_739111 PE=4 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.066e-30
Identity = 76/122 (62.30%), Postives = 94/122 (77.05%), Query Frame = -2 
Query:  147 MASAS-VATALPLRSATQNSLKRPSSESFFRPLPVKQPKRVTHSKS--KLEIHASLKQKAVTGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLTAIFGAVFGVANFDPVKR 503
            MAS S V+ ALPL  A+Q  +  P+SE+FF+PLP +  K ++ SKS  + ++ ASLK+K VTGLTA +LTASMVIP+VA AAG+  SPSL+NFLLSI AGG VL AI GAV GV+NFDPVKR
Sbjct:    1 MASTSAVSMALPLTYASQKRI--PASEAFFKPLPARPSKAMSASKSSGRFQVKASLKEKLVTGLTAGALTASMVIPDVAEAAGAGASPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVKR 120
[Close]
BLAST of Cicer_arietinum_v1_Contig3566 vs. TrEMBL
Match: B9N5E4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_745105 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.684e-28
Identity = 71/124 (57.26%), Postives = 91/124 (73.39%), Query Frame = -2 
Query:  144 MASAS-VATALPLRSATQNSLKRPSSESFFRPLPVKQPKRV---THSKSKLEIHASLKQKAVTGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLTAIFGAVFGVANFDPVKRA 503
            MAS S V+ A+PL  A++ +   P+SE+FF+PLPV+  K +   +    + ++ ASLK+K VTGLTA +LT SMVIPEVA AAG  +SPSL NFLLSI AGG VL AI GAV GV+NFDPV+R+
Sbjct:    1 MASTSAVSMAMPLTHASRKAA--PTSEAFFKPLPVRPSKAIAAASRCNGRFQVKASLKEKVVTGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLAAIAGAVVGVSNFDPVRRS 122
[Close]
BLAST of Cicer_arietinum_v1_Contig3566 vs. TrEMBL
Match: A9PJ43_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.818e-27
Identity = 70/124 (56.45%), Postives = 90/124 (72.58%), Query Frame = -2 
Query:  144 MASAS-VATALPLRSATQNSLKRPSSESFFRPLPVKQPKRV---THSKSKLEIHASLKQKAVTGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLTAIFGAVFGVANFDPVKRA 503
            MAS S V+ A+PL  A++ +   P+SE+FF+PLP +  K +   +    + ++ ASLK+K VTGLTA +LT SMVIPEVA AAG  +SPSL NFLLSI AGG VL AI GAV GV+NFDPV+R+
Sbjct:    1 MASTSAVSMAMPLTHASRKAA--PTSEAFFKPLPARPSKAIAAASRCNDRFQVKASLKEKVVTGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLVAIAGAVVGVSNFDPVRRS 122
[Close]
BLAST of Cicer_arietinum_v1_Contig3566 vs. TAIR peptide
Match: AT2G06520.1 (| Symbols: PSBX | photosystem II subunit X | chr2:2587868-2588218 REVERSE LENGTH=116)

HSP 1 Score: 108.227 bits (269), Expect = 4.170e-24
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = -2 
Query:  147 LKRPSSESFFRPLPVKQPKRVTHS---KSKLEIHASLKQKAVTGLTAASLTASMVIPEVAHAAGSDLSPSLQNFLLSIFAGGAVLTAIFGAVFGVANFDPVKR 446
            L +  S  F +PLP+K  K +  +     +L++ A    KA+TG++AA+LTASMVIPE+A AAGS +SPSL+NFLLSI +GG VLT I G V GV+NFDPVKR
Sbjct:   13 LNQTRSSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKALTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVKR 115
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig3566 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6SVA3_SOYBN3.923e-3770.16Putative uncharacterized protein OS=Glycine max PE... [more]
C6TBW1_SOYBN9.662e-3667.74Putative uncharacterized protein OS=Glycine max PE... [more]
B9RK19_RICCO1.395e-3468.29Putative uncharacterized protein OS=Ricinus commun... [more]
B9HD21_POPTR1.105e-3161.79Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7STV7_VITVI3.556e-3064.75Whole genome shotgun sequence of line PN40024, sca... [more]
A9PJ86_9ROSI3.556e-3063.11Putative uncharacterized protein OS=Populus tricho... [more]
A9PE66_POPTR3.556e-3063.11Putative uncharacterized protein OS=Populus tricho... [more]
B9MSX5_POPTR6.066e-3062.30Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9N5E4_POPTR9.684e-2857.26Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PJ43_9ROSI2.818e-2756.45Putative uncharacterized protein OS=Populus tricho... [more]
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BLAST of Cicer_arietinum_v1_Contig3566 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G06520.14.170e-2455.34| Symbols: PSBX | photosystem II subunit X | chr2:... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 5..16
score
IPR009518Photosystem II PsbXPFAMPF06596PsbXcoord: 100..135
score: 1.9

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig3566 ID=Cicer_arietinum_v1_Contig3566; Name=Cicer_arietinum_v1_Contig3566; organism=Cicer arietinum; type=contig; length=681bp
AAAAGAAAAGGAGCAGCTGGGATTAACAATTTAGTAAACAAACATATAAA
GCAACTAGTTGCATAAACATATAGTATTAGATACATAACACAGGAATTAT
ATAGGACATAAAATCTTATAGCTTTTCAAAGCATACTTATTTAAGCTCTT
TTAACCGGATCAAAGTTGGCTACTCCAAAAACAGCTCCAAATATAGCTGT
TAGCACAGCTCCACCAGCAAAAATGCTTAGTAAAAAGTTCTGAAGAGATG
GTGAGAGATCAGATCCAGCTGCATGAGCCACCTCCGGTATAACCATGGAA
GCTGTCAAGGATGCTGCTGTAAGTCCTGTCACTGCCTTCTGTTTCAAAGA
TGCATGAATTTCAAGCTTGGATTTTGAATGTGTGACCCTCTTTGGTTGTT
TTACTGGTAACGGCCTGAAAAATGATTCAGATGATGGCCTTTTCAGACTG
TTCTGTGTAGCAGACCTCAGGGGTAAAGCCGTTGCAACAGAAGCAGAAGC
CATTTTTTTTCTTTTAAAAGATTCTACCCGCCGCTCAATAGGAATTGCGT
TTCAAGGTGTCCCGCAAGGCTCATCCGCCTTACGAGGTCCACCAACGACA
CGTGCCTCTGGGGGGCCAAGGCCCCCTACTGCTGGTCGGCAAGCGAACGA
CGGGCACACGCATCGCTTCTAGCCCGGGAAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR009518PSII_PsbX