Cicer_arietinum_v1_Contig3582

Contig Overview


Name	Cicer_arietinum_v1_Contig3582
Unique Name	Cicer_arietinum_v1_Contig3582
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	407

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
EL593261	EST	EL593261:1..273 +
EL585371	EST	EL585371:24..355 +
EL585388	EST	EL585388:24..407 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
EL593261	EL593261	Cicer arietinum	EST
EL585371	EL585371	Cicer arietinum	EST
EL585388	EL585388	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig3582 vs. SwissProt
Match: Y4105_ARATH (Uncharacterized protein At4g01050 OS=Arabidopsis thaliana GN=At4g01050 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.629e-35
Identity = 57/90 (63.33%), Postives = 69/90 (76.67%), Query Frame = 2

Query:   26 PKKASSFDFGSLTDTITDAIGDTSDGLAVTLGIAAATGLGVIAFSEIETILQLVGSAALVQFASKKLLFAEDRKKTLQQVG*VLGAPRSP 295
            PKK  S D  SLTD+I+   G++SDG++V LG+AAA GL V AF+EIETILQL+GSAALVQ A KKLLFAEDRK+TL+QV   L    +P
Sbjct:  251 PKKTLSLDLSSLTDSISGVFGESSDGVSVALGVAAAAGLSVFAFTEIETILQLLGSAALVQLAGKKLLFAEDRKQTLKQVDEFLNTKVAP 340

HSP 2 Score: 57.7658 bits (138), Expect = 4.629e-35
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1

Query:  286 KVAPKELVDEIKDIGKALLPTSTNNKALPAP 378
            KVAPKELVDE+K+IGKALLP ST+NKALPAP
Sbjct:  337 KVAPKELVDELKEIGKALLPQSTSNKALPAP 367

[Close]

BLAST of Cicer_arietinum_v1_Contig3582 vs. TrEMBL
Match: B7FNA7_MEDTR (Putative uncharacterized protein (Fragment) OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.191e-46
Identity = 75/96 (78.12%), Postives = 81/96 (84.38%), Query Frame = 2

Query:    8 GRPGR*PKKASSFDFGSLTDTITDAIGDTSDGLAVTLGIAAATGLGVIAFSEIETILQLVGSAALVQFASKKLLFAEDRKKTLQQVG*VLGAPRSP 295
            G P   PKKA S DFGSLTDTI DAIG+ SDGLAVTLGIAAATGLGV+AFSE+ETILQLVGSAA+VQFASKKLLFAEDRKKTL+QV   L    +P
Sbjct:  250 GLPWVEPKKALSLDFGSLTDTINDAIGE-SDGLAVTLGIAAATGLGVLAFSEVETILQLVGSAAIVQFASKKLLFAEDRKKTLKQVNEFLNTKVAP 344

HSP 2 Score: 73.1738 bits (178), Expect = 6.191e-46
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1

Query:  286 KVAPKELVDEIKDIGKALLPTSTNNKALPAPTKNSPVLAT 405
            KVAPKELVDEIKDIGKALLPTSTN+KALPAPT+N P LAT
Sbjct:  341 KVAPKELVDEIKDIGKALLPTSTNDKALPAPTENIPELAT 380

[Close]

BLAST of Cicer_arietinum_v1_Contig3582 vs. TrEMBL
Match: B9I8W2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_731296 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.927e-34
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 2

Query:    8 GRPGR*PKKASSFDFGSLTDTITDAIGDTSDGLAVTLGIAAATGLGVIAFSEIETILQLVGSAALVQFASKKLLFAEDRKKTLQQV 265
            G P   PKKA S D G L+D I  A+G+ SD L VT  IAAATGLGV+AFSEIE ILQ++GSAAL+QF SKKLLFAEDRK+TL+QV
Sbjct:  249 GLPWIPPKKAFSLDLGDLSDAIGGALGEGSDALPVTFAIAAATGLGVLAFSEIEAILQVLGSAALIQFVSKKLLFAEDRKQTLEQV 334

HSP 2 Score: 57.7658 bits (138), Expect = 1.927e-34
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1

Query:  286 KVAPKELVDEIKDIGKALLPTSTNNKALPAPTKNSP 393
            K+APKELVDE+KDIGKALLP +  +KALPAP + SP
Sbjct:  341 KIAPKELVDELKDIGKALLPVAVTSKALPAPAEASP 376

[Close]

BLAST of Cicer_arietinum_v1_Contig3582 vs. TrEMBL
Match: Q0WWP1_ARATH (Putative uncharacterized protein At4g01050 OS=Arabidopsis thaliana GN=At4g01050 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.403e-34
Identity = 57/90 (63.33%), Postives = 69/90 (76.67%), Query Frame = 2

Query:   26 PKKASSFDFGSLTDTITDAIGDTSDGLAVTLGIAAATGLGVIAFSEIETILQLVGSAALVQFASKKLLFAEDRKKTLQQVG*VLGAPRSP 295
            PKK  S D  SLTD+I+   G++SDG++V LG+AAA GL V AF+EIETILQL+GSAALVQ A KKLLFAEDRK+TL+QV   L    +P
Sbjct:  251 PKKTLSLDLSSLTDSISGVFGESSDGVSVALGVAAAAGLSVFAFTEIETILQLLGSAALVQLAGKKLLFAEDRKQTLKQVDEFLNTKVAP 340

HSP 2 Score: 57.7658 bits (138), Expect = 9.403e-34
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1

Query:  286 KVAPKELVDEIKDIGKALLPTSTNNKALPAP 378
            KVAPKELVDE+K+IGKALLP ST+NKALPAP
Sbjct:  337 KVAPKELVDELKEIGKALLPQSTSNKALPAP 367

[Close]

BLAST of Cicer_arietinum_v1_Contig3582 vs. TrEMBL
Match: B9GQZ9_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_644565 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.095e-31
Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = 2

Query:    8 GRPGR*PKKASSFDFGSLTDTITDAIGDTSDGLAVTLGIAAATGLGVIAFSEIETILQLVGSAALVQFASKKLLFAEDRKKTLQQV 265
            G P   PKKA S D   L+DTI+ A G+ S  L+VT  ++AA GLGV+AFSE+ETILQ++GSAAL+QF SKKLLFAEDRK+TL+QV
Sbjct:  251 GLPWIPPKKALSLDLSDLSDTISGAFGEGSGALSVTFALSAAAGLGVLAFSEMETILQVLGSAALIQFVSKKLLFAEDRKQTLEQV 336

HSP 2 Score: 53.5286 bits (127), Expect = 1.095e-31
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1

Query:  286 KVAPKELVDEIKDIGKALLPTSTNNKALPAPTKNSP 393
            K+APKEL DE+KDIG+ALLP     KALPAPT+ SP
Sbjct:  343 KIAPKELGDELKDIGRALLPVPVTIKALPAPTEASP 378

[Close]

BLAST of Cicer_arietinum_v1_Contig3582 vs. TrEMBL
Match: D7UCN3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027075001 PE=4 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.422e-31
Identity = 52/80 (65.00%), Postives = 69/80 (86.25%), Query Frame = 2

Query:   26 PKKASSFDFGSLTDTITDAIGDTSDGLAVTLGIAAATGLGVIAFSEIETILQLVGSAALVQFASKKLLFAEDRKKTLQQV 265
            PKK  S D G+  ++I+DA+G+  DGL++T+G+AAATGLG++AFSE+ET+LQL+GSAA+VQF  KK LFAEDRK+TLQQV
Sbjct:  214 PKKTLSLDLGNFAESISDALGEGIDGLSLTVGLAAATGLGLLAFSEVETLLQLLGSAAIVQFVGKKFLFAEDRKETLQQV 293

HSP 2 Score: 48.521 bits (114), Expect = 2.422e-31
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1

Query:  286 KVAPKELVDEIKDIGKALLPTSTNNKALPAPTKNSP 393
            K+APK+ VDEIKDIGKALLP+     +LPAP    P
Sbjct:  300 KIAPKDFVDEIKDIGKALLPSPAYGNSLPAPAAAPP 335

[Close]

BLAST of Cicer_arietinum_v1_Contig3582 vs. TrEMBL
Match: C5XZG6_SORBI (Putative uncharacterized protein Sb04g009380 OS=Sorghum bicolor GN=Sb04g009380 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.485e-27
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 2

Query:    2 SXGRPGR*PKKASSFDFGSLTDTITDAIGDTSDGLAVTLGIAAATGLGVIAFSEIETILQLVGSAALVQFASKKLLFAEDRKKTLQQV 265
            S   P + P K  SFD G L        GD SDGL VT+G+AAATGLGV+A++EIET+LQ +GSAA+VQ    KLL+AEDR+KTL+Q+
Sbjct:  235 SSNLPWKAPAKGFSFDLGEL-------FGDGSDGLPVTIGLAAATGLGVLAYTEIETLLQFLGSAAVVQLVVTKLLYAEDRQKTLKQI 315

HSP 2 Score: 51.9878 bits (123), Expect = 2.485e-27
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1

Query:  286 KVAPKELVDEIKDIGKALLPTSTNNKALPAPTKNSPVLAT 405
            KVAPKELVDEIK+IG+ALLP  ++ K+ P P   +PV AT
Sbjct:  322 KVAPKELVDEIKEIGQALLPLPSDAKSQPGPATATPVAAT 361

[Close]

BLAST of Cicer_arietinum_v1_Contig3582 vs. TrEMBL
Match: Q6ETQ7_ORYSJ (Hydroxyproline-rich glycoprotein-like OS=Oryza sativa subsp. japonica GN=P0613F08.22 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.960e-26
Identity = 41/66 (62.12%), Postives = 59/66 (89.39%), Query Frame = 2

Query:   68 TITDAIGDTSDGLAVTLGIAAATGLGVIAFSEIETILQLVGSAALVQFASKKLLFAEDRKKTLQQV 265
            +++D IGD +DGL VTLG+AAATGLG++A++EIET+LQ +GSAA+VQ  + KL++AEDRK+TL+Q+
Sbjct:  254 SLSDLIGDGTDGLPVTLGLAAATGLGILAYTEIETVLQFLGSAAIVQLVASKLIYAEDRKRTLKQI 319

HSP 2 Score: 48.521 bits (114), Expect = 9.960e-26
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1

Query:  286 KVAPKELVDEIKDIGKALLPTSTNNKALPAPTKNSPVLA 402
            KVAPKELVDEIK+IG+ALLP ST  K+ PA T+ +P  A
Sbjct:  326 KVAPKELVDEIKEIGQALLP-STGTKSQPAITEAAPATA 363

[Close]

BLAST of Cicer_arietinum_v1_Contig3582 vs. TrEMBL
Match: B4FBY4_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.688e-25
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 2

Query:    2 SXGRPGR*PKKASSFDFGSLTDTITDAIGDTSDGLAVTLGIAAATGLGVIAFSEIETILQLVGSAALVQFASKKLLFAEDRKKTLQQV 265
            S   P + P K  SFD G L        GD SDGL VT+G+AAATGLGV+A++EIET+LQ +GSAA+VQ    KLL+AEDR+KTL+Q+
Sbjct:  234 SSNLPWKAPPKGFSFDLGEL-------FGDGSDGLPVTIGLAAATGLGVLAYTEIETLLQFLGSAAVVQLVVTKLLYAEDRQKTLKQI 314

HSP 2 Score: 45.8246 bits (107), Expect = 1.688e-25
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1

Query:  286 KVAPKELVDEIKDIGKALLPTSTNNKALPAPTKNSPVLAT 405
            KVAPKEL+DEIK+IG+ALLP       LP   K+ P LAT
Sbjct:  321 KVAPKELIDEIKEIGQALLP-------LPGDAKSQPALAT 353

[Close]

BLAST of Cicer_arietinum_v1_Contig3582 vs. TrEMBL
Match: B8LLQ8_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.198e-25
Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = 2

Query:    8 GRPGR*PKKASSFDFGSLTDTITDAIGDTSDGLAVTLGIAAATGLGVIAFSEIETILQLVGSAALVQFASKKLLFAEDRKKTLQQV 265
            G P   PK   + DFG+L + +  A+ D+S  + VT+G+AAATG G+ AFSEIET+LQL+GSAAL+Q   K+LLFAEDRK+TLQQ+
Sbjct:  263 GLPWLIPKSLFTVDFGNLKEALDSALEDSSGIVPVTVGVAAATGFGLAAFSEIETVLQLLGSAALLQVFVKRLLFAEDRKRTLQQI 348

HSP 2 Score: 43.1282 bits (100), Expect = 2.198e-25
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1

Query:  286 KVAPKELVDEIKDIGKALLP----TSTNNKALPAPTKNS 390
            KVAPKELVDE+K+IGKALLP     +TNN A+   T+ +
Sbjct:  355 KVAPKELVDELKEIGKALLPKTADVATNNGAVVPRTQQA 393

[Close]

BLAST of Cicer_arietinum_v1_Contig3582 vs. TrEMBL
Match: A2X345_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06628 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.844e-25
Identity = 41/66 (62.12%), Postives = 59/66 (89.39%), Query Frame = 2

Query:   68 TITDAIGDTSDGLAVTLGIAAATGLGVIAFSEIETILQLVGSAALVQFASKKLLFAEDRKKTLQQV 265
            +++D IGD +DGL VTLG+AAATGLG++A++EIET+LQ +GSAA+VQ  + KL++AEDRK+TL+Q+
Sbjct:  252 SLSDLIGDGTDGLPVTLGLAAATGLGILAYTEIETVLQFLGSAAIVQLVASKLIYAEDRKRTLKQI 317

HSP 2 Score: 46.2098 bits (108), Expect = 4.844e-25
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1

Query:  286 KVAPKELVDEIKDIGKALLPTSTNNKALPAPTKNSPVLA 402
            KVAPKELVDEIK+I +ALLP ST  K+ PA T+ +P  A
Sbjct:  324 KVAPKELVDEIKEISQALLP-STGTKSQPAITEAAPATA 361

[Close]

BLAST of Cicer_arietinum_v1_Contig3582 vs. TAIR peptide
Match: AT4G01050.1 (| Symbols: TROL | thylakoid rhodanese-like | chr4:455874-458175 FORWARD LENGTH=466)

HSP 1 Score: 109.768 bits (273), Expect = 5.233e-36
Identity = 57/90 (63.33%), Postives = 69/90 (76.67%), Query Frame = 2

Query:   26 PKKASSFDFGSLTDTITDAIGDTSDGLAVTLGIAAATGLGVIAFSEIETILQLVGSAALVQFASKKLLFAEDRKKTLQQVG*VLGAPRSP 295
            PKK  S D  SLTD+I+   G++SDG++V LG+AAA GL V AF+EIETILQL+GSAALVQ A KKLLFAEDRK+TL+QV   L    +P
Sbjct:  251 PKKTLSLDLSSLTDSISGVFGESSDGVSVALGVAAAAGLSVFAFTEIETILQLLGSAALVQLAGKKLLFAEDRKQTLKQVDEFLNTKVAP 340

HSP 2 Score: 57.7658 bits (138), Expect = 5.233e-36
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1

Query:  286 KVAPKELVDEIKDIGKALLPTSTNNKALPAP 378
            KVAPKELVDE+K+IGKALLP ST+NKALPAP
Sbjct:  337 KVAPKELVDELKEIGKALLPQSTSNKALPAP 367

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig3582 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig3582 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig3582 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig3582 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
Y4105_ARATH	4.629e-35	63.33	Uncharacterized protein At4g01050 OS=Arabidopsis t...	[more]

BLAST of Cicer_arietinum_v1_Contig3582 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FNA7_MEDTR	6.191e-46	78.13	Putative uncharacterized protein (Fragment) OS=Med...	[more]
B9I8W2_POPTR	1.927e-34	68.60	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q0WWP1_ARATH	9.403e-34	63.33	Putative uncharacterized protein At4g01050 OS=Arab...	[more]
B9GQZ9_POPTR	1.095e-31	63.95	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
D7UCN3_VITVI	2.422e-31	65.00	Whole genome shotgun sequence of line PN40024, sca...	[more]
C5XZG6_SORBI	2.485e-27	56.82	Putative uncharacterized protein Sb04g009380 OS=So...	[more]
Q6ETQ7_ORYSJ	9.960e-26	62.12	Hydroxyproline-rich glycoprotein-like OS=Oryza sat...	[more]
B4FBY4_MAIZE	1.688e-25	56.82	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
B8LLQ8_PICSI	2.198e-25	56.98	Putative uncharacterized protein OS=Picea sitchens...	[more]
A2X345_ORYSI	4.844e-25	62.12	Putative uncharacterized protein OS=Oryza sativa s...	[more]

BLAST of Cicer_arietinum_v1_Contig3582 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G01050.1	5.233e-36	63.33	\| Symbols: TROL \| thylakoid rhodanese-like \| chr4:...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11177	CHITINASE	coord: 18..47 score: 0.
None	No IPR available	PANTHER	PTHR11177:SF3	CHITINASE	coord: 18..47 score: 0.
None	No IPR available	SEG	seg	seg	coord: 6..16 score
None	No IPR available	SEG	seg	seg	coord: 18..28 score
None	No IPR available	SEG	seg	seg	coord: 41..52 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig3582 ID=Cicer_arietinum_v1_Contig3582; Name=Cicer_arietinum_v1_Contig3582; organism=Cicer arietinum; type=contig; length=407bp
TTCGANCGGCCGCCCGGGCAGGTAACCAAAGAAAGCATCAAGCTTTGATT
TTGGCAGCCTGACAGATACTATCACTGATGCAATTGGAGATACCTCTGAT
GGCTTGGCTGTTACTCTTGGGATTGCTGCAGCTACTGGATTGGGTGTAAT
AGCTTTTTCTGAGATAGAAACAATTCTCCAACTTGTAGGATCAGCTGCAC
TTGTTCAGTTTGCAAGCAAGAAGCTTCTATTTGCTGAGGACCGGAAAAAA
ACACTACAACAAGTTGGATGAGTTCTTGGAGCACCAAGGTCGCCCCTAAG
GAGCTTGTCGATGAAATAAAGGATATCGGAAAAGCTCTTCTACCAACCTC
GACCAACAATAAGGCTCTTCCTGCACCAACAAAGAATAGTCCAGTGCTTG
CTACAGC

Search form

Cicer_arietinum_v1_Contig3582