Cicer_arietinum_v1_Contig3604

Contig Overview
NameCicer_arietinum_v1_Contig3604
Unique NameCicer_arietinum_v1_Contig3604
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length351
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
EH059220ESTEH059220:1..351 +Cicer arietinum unigene v1n/a
EH058712ESTEH058712:1..351 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
EH059220EH059220Cicer arietinumEST
EH058712EH058712Cicer arietinumEST


Homology
BLAST of Cicer_arietinum_v1_Contig3604 vs. TrEMBL
Match: B9GJM4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_829626 PE=4 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.088e-31
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 2
Query:    2 LEGLWRNGLAALKGSCPNCGEEVFAFVRTDKANNSPHRAQCHVCECLLEFRTEVEQSTSRFGRQWVYGRIYLVRRSRRQR 241
            L+GLWRN L ALKG+CPNCGEEVFAFV++D++N+SPHRA CHVCE LLEFRT+VEQ+TSR GRQWVYGRIYLV R RRQR
Sbjct:  214 LQGLWRNDLVALKGACPNCGEEVFAFVKSDQSNDSPHRADCHVCESLLEFRTKVEQTTSRVGRQWVYGRIYLVSR-RRQR 292          
BLAST of Cicer_arietinum_v1_Contig3604 vs. TrEMBL
Match: D7MSE5_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_496067 PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.164e-31
Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 2
Query:    2 LEGLWRNGLAALKGSCPNCGEEVFAFVRTDKANNSPHRAQCHVCECLLEFRTEVEQSTSRFGRQWVYGRIYLVRRSRRQR 241
            L+GLWRN L ALKG CPNCGEEVFAFVR+D++N S H+A CHVCEC LEFRT+VE+STSR GR+WVYGRIYLV R RR R
Sbjct:  215 LKGLWRNDLTALKGDCPNCGEEVFAFVRSDQSNRSAHKADCHVCECTLEFRTKVEKSTSRLGRKWVYGRIYLVSRPRRDR 294          
BLAST of Cicer_arietinum_v1_Contig3604 vs. TrEMBL
Match: Q8LDH1_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana GN=At5g59400 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.202e-30
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 2
Query:    2 LEGLWRNGLAALKGSCPNCGEEVFAFVRTDKANNSPHRAQCHVCECLLEFRTEVEQSTSRFGRQWVYGRIYLVRRSRRQR 241
            L+GLWRN L ALKG CPNCGEEVFAFVR+D++N S H+A CHVCEC LEFRT+VE+S SR GR+WVYGRIYLV R RR R
Sbjct:  215 LKGLWRNDLTALKGDCPNCGEEVFAFVRSDQSNRSAHKADCHVCECTLEFRTKVEKSASRLGRKWVYGRIYLVSRPRRDR 294          
BLAST of Cicer_arietinum_v1_Contig3604 vs. TrEMBL
Match: B9T4C5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0203230 PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.202e-30
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 2
Query:    2 LEGLWRNGLAALKGSCPNCGEEVFAFVRTDKANNSPHRAQCHVCECLLEFRTEVEQSTSRFGRQWVYGRIYLVRRSRRQR 241
            L+GLWRN L ALKG+CPNCGEEVFAFV++D++NNSPHRA CHVCE LLEFRT+VE++ SR GR WVYGRIYLV R RRQR
Sbjct:  207 LQGLWRNDLVALKGACPNCGEEVFAFVKSDQSNNSPHRADCHVCESLLEFRTKVERTDSRLGRNWVYGRIYLVSR-RRQR 285          
BLAST of Cicer_arietinum_v1_Contig3604 vs. TrEMBL
Match: Q93V65_ARATH (AT5g59400/f2o15_60 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.962e-29
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 2
Query:    2 LEGLWRNGLAALKGSCPNCGEEVFAFVRTDKANNSPHRAQCHVCECLLEFRT--EVEQSTSRFGRQWVYGRIYLVRRSRRQR 241
            L+GLWRN L ALKG CPNCGEEVFAFVR+D++N S H+A CHVCEC LEFRT  EV++S SR GR+WVYGRIYLV R RR R
Sbjct:   71 LKGLWRNDLTALKGDCPNCGEEVFAFVRSDQSNRSAHKADCHVCECTLEFRTKVEVDKSASRLGRKWVYGRIYLVSRPRRDR 152          
BLAST of Cicer_arietinum_v1_Contig3604 vs. TrEMBL
Match: B9HPG2_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_723247 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.962e-29
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 2
Query:    2 LEGLWRNGLAALKGSCPNCGEEVFAFVRTDKANNSPHRAQCHVCECLLEFRTEVEQSTSRFGRQWVYGRIYLVRR 226
            L+GLWRN L ALKG+CPNCGEEVFAFV++D++NNS HRA CHVCE LLEFRTEVEQ+ SR GR+WV+GRIYLV R
Sbjct:  212 LQGLWRNDLVALKGACPNCGEEVFAFVKSDQSNNSTHRADCHVCESLLEFRTEVEQTISRVGRRWVFGRIYLVSR 286          
BLAST of Cicer_arietinum_v1_Contig3604 vs. TrEMBL
Match: D7SKE0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024939001 PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.917e-26
Identity = 56/78 (71.79%), Postives = 64/78 (82.05%), Query Frame = 2
Query:    2 LEGLWRNGLAALKGSCPNCGEEVFAFVRTDKANNSPHRAQCHVCECLLEFRTEVEQSTSRFGRQWVYGRIYLVRRSRR 235
            L+GLWRN L ALKG+CPNCGEEVFAFV++ + N+SPH A CHVCE  LEF T+VEQST   GR+WVYGRIYLV RS R
Sbjct:  211 LQGLWRNDLVALKGACPNCGEEVFAFVKSGQPNSSPHSADCHVCESSLEFSTKVEQST--LGRRWVYGRIYLVPRSGR 286          
BLAST of Cicer_arietinum_v1_Contig3604 vs. TrEMBL
Match: A5ATD4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021080 PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.917e-26
Identity = 56/78 (71.79%), Postives = 64/78 (82.05%), Query Frame = 2
Query:    2 LEGLWRNGLAALKGSCPNCGEEVFAFVRTDKANNSPHRAQCHVCECLLEFRTEVEQSTSRFGRQWVYGRIYLVRRSRR 235
            L+GLWRN L ALKG+CPNCGEEVFAFV++ + N+SPH A CHVCE  LEF T+VEQST   GR+WVYGRIYLV RS R
Sbjct:  977 LQGLWRNDLVALKGACPNCGEEVFAFVKSGQPNSSPHSADCHVCESSLEFSTKVEQST--LGRRWVYGRIYLVPRSGR 1052          
BLAST of Cicer_arietinum_v1_Contig3604 vs. TrEMBL
Match: C5YYH2_SORBI (Putative uncharacterized protein Sb09g001180 OS=Sorghum bicolor GN=Sb09g001180 PE=4 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.196e-24
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = 2
Query:    2 LEGLWRNGLAALKGSCPNCGEEVFAFVRTDKANNSPHRAQCHVCECLLEFRTEVEQSTSRFGRQWVYGRIYLVRRSRRQR 241
            L GL  N L ALKGSCPNCGE+VFAFV+TDK+  +PHRA+CHVCEC LE+RT++E+S S   R WVYGR+YLV++   ++
Sbjct:   69 LRGLLTNNLVALKGSCPNCGEQVFAFVKTDKSVRAPHRAECHVCECPLEYRTKIEKSLSGPRRSWVYGRVYLVKQGHPRK 148          
BLAST of Cicer_arietinum_v1_Contig3604 vs. TrEMBL
Match: Q94HI8_ORYSA (Putative uncharacterized protein OS=Oryza sativa PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.090e-23
Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    2 LEGLWRNGLAALKGSCPNCGEEVFAFVRTDKANNSPHRAQCHVCECLLEFRTEVEQSTSRFGRQWVYGRIYLVRRSRRQR 241
            L+GL  N L ALKGSCPNCGE+VFAFV+TD +  +PHRA+CHVC C LE+RT+VE+S S   R WVYGR+YLV++   ++
Sbjct:  187 LQGLLTNNLVALKGSCPNCGEQVFAFVKTDNSIKAPHRAECHVCSCPLEYRTKVEKSLSGTRRTWVYGRVYLVKQGHPRK 266          
BLAST of Cicer_arietinum_v1_Contig3604 vs. TAIR peptide
Match: AT5G59400.1 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:23957756-23959518 FORWARD LENGTH=299)

HSP 1 Score: 135.961 bits (341), Expect = 4.661e-33
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 2
Query:    2 LEGLWRNGLAALKGSCPNCGEEVFAFVRTDKANNSPHRAQCHVCECLLEFRTEVEQSTSRFGRQWVYGRIYLVRRSRRQR 241
            L+GLWRN L ALKG CPNCGEEVFAFVR+D++N S H+A CHVCEC LEFRT+VE+S SR GR+WVYGRIYLV R RR R
Sbjct:  215 LKGLWRNDLTALKGDCPNCGEEVFAFVRSDQSNRSAHKADCHVCECTLEFRTKVEKSASRLGRKWVYGRIYLVSRPRRDR 294          
BLAST of Cicer_arietinum_v1_Contig3604 vs. TAIR peptide
Match: AT5G59400.2 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23957756-23959518 FORWARD LENGTH=301)

HSP 1 Score: 131.339 bits (329), Expect = 1.148e-31
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 2
Query:    2 LEGLWRNGLAALKGSCPNCGEEVFAFVRTDKANNSPHRAQCHVCECLLEFRT--EVEQSTSRFGRQWVYGRIYLVRRSRRQR 241
            L+GLWRN L ALKG CPNCGEEVFAFVR+D++N S H+A CHVCEC LEFRT  EV++S SR GR+WVYGRIYLV R RR R
Sbjct:  215 LKGLWRNDLTALKGDCPNCGEEVFAFVRSDQSNRSAHKADCHVCECTLEFRTKVEVDKSASRLGRKWVYGRIYLVSRPRRDR 296          
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig3604 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9GJM4_POPTR1.088e-3180.00Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7MSE5_ARALY3.164e-3176.25Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q8LDH1_ARATH1.202e-3075.00Putative uncharacterized protein OS=Arabidopsis th... [more]
B9T4C5_RICCO1.202e-3077.50Putative uncharacterized protein OS=Ricinus commun... [more]
Q93V65_ARATH2.962e-2973.17AT5g59400/f2o15_60 OS=Arabidopsis thaliana PE=2 SV... [more]
B9HPG2_POPTR2.962e-2977.33Predicted protein (Fragment) OS=Populus trichocarp... [more]
D7SKE0_VITVI8.917e-2671.79Whole genome shotgun sequence of line PN40024, sca... [more]
A5ATD4_VITVI8.917e-2671.79Putative uncharacterized protein OS=Vitis vinifera... [more]
C5YYH2_SORBI2.196e-2462.50Putative uncharacterized protein Sb09g001180 OS=So... [more]
Q94HI8_ORYSA1.090e-2361.25Putative uncharacterized protein OS=Oryza sativa P... [more]
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BLAST of Cicer_arietinum_v1_Contig3604 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G59400.14.661e-3375.00| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
AT5G59400.21.148e-3173.17| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig3604 ID=Cicer_arietinum_v1_Contig3604; Name=Cicer_arietinum_v1_Contig3604; organism=Cicer arietinum; type=contig; length=351bp
ACTTGAAGGCTTGTGGAGGAATGGCTTGGCGGCATTGAAGGGTTCATGTC
CAAATTGTGGAGAAGAGGTATTTGCATTTGTAAGAACGGACAAGGCTAAT
AACTCACCCCATAGAGCACAGTGCCATGTGTGTGAATGCCTATTGGAATT
TCGCACCGAAGTTGAGCAATCAACTTCAAGATTCGGTAGACAATGGGTTT
ATGGACGTATTTATCTTGTTCGTAGATCCAGACGCCAAAGGGAGCTGTAA
ATTTTCTTCCCATCATCTGTGACTATGATTGTCAATATTAAAGAAAGGAA
TACAAGCAACTTCTGTTTAGTTCTTAATTATAGTCACAGAACCCAATTTG
T
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