Cicer_arietinum_v1_Contig3620

Contig Overview
NameCicer_arietinum_v1_Contig3620
Unique NameCicer_arietinum_v1_Contig3620
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length417
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
EH059040ESTEH059040:1..292 +Cicer arietinum unigene v1n/a
EH059191ESTEH059191:46..416 -Cicer arietinum unigene v1n/a
EH059064ESTEH059064:46..417 +Cicer arietinum unigene v1n/a
EH058868ESTEH058868:46..416 +Cicer arietinum unigene v1n/a
EH058709ESTEH058709:46..416 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
EH059040EH059040Cicer arietinumEST
EH059191EH059191Cicer arietinumEST
EH059064EH059064Cicer arietinumEST
EH058868EH058868Cicer arietinumEST
EH058709EH058709Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. SwissProt
Match: RPAB3_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus musculus GN=Polr2h PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.378e-12
Identity = 38/110 (34.55%), Postives = 64/110 (58.18%), Query Frame = 3 
Query:   48 MLLDVNTEIYPMNKKERFLLALSPSLV---------LNTKDGSVSIQEKFEYIMYGRLYDITADGL-TRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            ++LDVN +IYP++  ++F L ++ +L           N  D   S  ++FEY+MYG++Y I  D   T +   +  Y S+GGL + L+GD ++   F VD  ++LL++KL
Sbjct:   39 LILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKL 148
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. SwissProt
Match: RPAB3_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens GN=POLR2H PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 1.378e-12
Identity = 38/110 (34.55%), Postives = 64/110 (58.18%), Query Frame = 3 
Query:   48 MLLDVNTEIYPMNKKERFLLALSPSLV---------LNTKDGSVSIQEKFEYIMYGRLYDITADGL-TRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            ++LDVN +IYP++  ++F L ++ +L           N  D   S  ++FEY+MYG++Y I  D   T +   +  Y S+GGL + L+GD ++   F VD  ++LL++KL
Sbjct:   39 LILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKL 148
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. SwissProt
Match: RPAB3_CAEBR (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis briggsae GN=rpb-8 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.599e-11
Identity = 34/112 (30.36%), Postives = 64/112 (57.14%), Query Frame = 3 
Query:   48 MLLDVNTEIYPMNKKERFLLALSPSLVLNTKDGSVSIQE-----------KFEYIMYGRLYDITADGLTRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKLE 350
            +++D+N++IYP+ + ++F L L+ +L    +DG     E           ++EY+MYG++Y +  D       ++  YASFGGL + L+G+  +   F VD  ++LL++K +
Sbjct:   39 LIIDINSQIYPLKQNDKFRLVLATTL---REDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDSGTDGGQLAAYASFGGLLMRLKGEAINLHGFEVDMNLYLLMKKTD 147
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. SwissProt
Match: RPAB3_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium discoideum GN=polr2h PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.791e-11
Identity = 38/105 (36.19%), Postives = 64/105 (60.95%), Query Frame = 3 
Query:   54 LDVNTEIYPMNKKERFLLALSPSLVLN-TKDGS-------VSIQEKFEYIMYGRLYDITADGLTRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRK 344
            +D+ T IYP+   ERF + L+ SL L+ + D S        S+ +K++Y+MYG+++    +    S  +V V+ASFGGL ++L+GDP +     +D  ++LLI+K
Sbjct:   41 IDIATHIYPLGH-ERFKMVLASSLNLDGSSDNSGSYDTNKPSLADKYDYVMYGKIFKYQKEN---SSSKVSVFASFGGLLVLLQGDPRYLPGIELDARIYLLIKK 141
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. SwissProt
Match: RPAB3_CAEEL (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis elegans GN=rpb-8 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.685e-10
Identity = 33/112 (29.46%), Postives = 63/112 (56.25%), Query Frame = 3 
Query:   48 MLLDVNTEIYPMNKKERFLLALSPSLVLNTKDGSVSIQE-----------KFEYIMYGRLYDITADGLTRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKLE 350
            +++D+N++IYP+ + ++  L L+ +L    +DG     E           ++EY+MYG++Y +  D       ++  YASFGGL + L+G+  +   F VD  ++LL++K +
Sbjct:   39 LIIDINSQIYPLKQNDKVRLVLATTL---REDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDTGTDGGKLAAYASFGGLLMRLKGEAINLHGFEVDMNLYLLMKKTD 147
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. SwissProt
Match: RPAB3_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Schizosaccharomyces pombe GN=rpb8 PE=1 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 1.335e-7
Identity = 31/98 (31.63%), Postives = 50/98 (51.02%), Query Frame = 3 
Query:   48 MLLDVNTEIYPMNKKERFLLALSPSLVLNTKDGSVSIQEKFEYIMYGRLYDITADGLTRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIR 341
            + LD+N++IYP+ K   F L ++ +L       S  ++E  +YIMYG++Y +          +V VY SFGGL + + G        ++D    LL R
Sbjct:   38 LTLDINSQIYPLEKDATFSLQITSNL------NSPDLKEAADYIMYGKVYRVE----EAKDEKVSVYVSFGGLLMAIEGSHRKLYRLSLDHVYLLLRR 125
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. TrEMBL
Match: Q5Z6G3_ORYSJ (Putative RNA polymerase I, II and III 16.5 kDa subunit OS=Oryza sativa subsp. japonica GN=P0028E05.28-1 PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.981e-21
Identity = 51/109 (46.79%), Postives = 75/109 (68.81%), Query Frame = 3 
Query:   45 YMLLDVNTEIYPMNKKERFLLALSPSLVLN--------TKDGSVSIQEKFEYIMYGRLYDITADGLTRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            YM LDV TE+YPM   +RF + L+P+L L+        T+ G  ++ +KF+Y+M+G+LY I+ D  +    +VE+YASFGGL +ML+GDPS   +F +DQ +FLLIRK+
Sbjct:  288 YMQLDVATEVYPMRAGDRFTMVLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLKGDPSSAASFELDQRLFLLIRKV 396
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. TrEMBL
Match: A3BF08_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_22498 PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.981e-21
Identity = 51/109 (46.79%), Postives = 75/109 (68.81%), Query Frame = 3 
Query:   45 YMLLDVNTEIYPMNKKERFLLALSPSLVLN--------TKDGSVSIQEKFEYIMYGRLYDITADGLTRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            YM LDV TE+YPM   +RF + L+P+L L+        T+ G  ++ +KF+Y+M+G+LY I+ D  +    +VE+YASFGGL +ML+GDPS   +F +DQ +FLLIRK+
Sbjct:   83 YMQLDVATEVYPMRAGDRFTMVLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLKGDPSSAASFELDQRLFLLIRKV 191
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. TrEMBL
Match: A2YGL5_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_24321 PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.981e-21
Identity = 51/109 (46.79%), Postives = 75/109 (68.81%), Query Frame = 3 
Query:   45 YMLLDVNTEIYPMNKKERFLLALSPSLVLN--------TKDGSVSIQEKFEYIMYGRLYDITADGLTRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            YM LDV TE+YPM   +RF + L+P+L L+        T+ G  ++ +KF+Y+M+G+LY I+ D  +    +VE+YASFGGL +ML+GDPS   +F +DQ +FLLIRK+
Sbjct:   83 YMQLDVATEVYPMRAGDRFTMVLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLKGDPSSAASFELDQRLFLLIRKV 191
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. TrEMBL
Match: B3TLS5_ELAGV (RNA polymerase OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.304e-20
Identity = 57/125 (45.60%), Postives = 85/125 (68.00%), Query Frame = 3 
Query:    6 KISLVD*RRSR-PRYMLLDVNTEIYPMNKKERFLLALSPSLVLN-TKDGSV-------SIQEKFEYIMYGRLYDITADGLTRSPP--EVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            K+S ++ R  +   YM LDVNTEIYP++  ++F + L+P+L L+ T D          S+ +KFEY+M+G+LY I+ +    S P  +VE+YASFGGL +ML+GDPS+  NF +DQ +FLL+RK+
Sbjct:   24 KVSRIEARSEQFDMYMQLDVNTEIYPLHVGDKFTMVLAPTLSLDGTPDSGYYMQGQRKSLADKFEYVMHGKLYKISEES---SGPNVKVEIYASFGGLLMMLKGDPSNATNFELDQRLFLLMRKV 145
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. TrEMBL
Match: A9P0G9_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.622e-20
Identity = 52/123 (42.28%), Postives = 87/123 (70.73%), Query Frame = 3 
Query:    6 KISLVD*RRSR-PRYMLLDVNTEIYPMNKKERFLLALSPSLVLN--------TKDGSVSIQEKFEYIMYGRLYDITADGLTRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            K+S ++ R  +   YMLLDVN ++YP++  E+F +AL+P+L L+         + G  S+ +K+EY+MYG+LY+++ +G + +  +VE+ ASFGGL ++L+GDPS+  NF +DQ +FLL+RK+
Sbjct:   24 KVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVALAPTLNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEG-SGANVKVEINASFGGLLMLLKGDPSNAGNFELDQRLFLLMRKV 145
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. TrEMBL
Match: Q84SP5_ORYSJ (Os03g0845700 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0043P23.23 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.636e-19
Identity = 51/111 (45.95%), Postives = 77/111 (69.37%), Query Frame = 3 
Query:   45 YMLLDVNTEIYPMNKKERFLLALSPSLVLN--------TKDGSVSIQEKFEYIMYGRLYDITADGLT--RSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            YM LDV T++YPM+  +RF + L P+L L+        T+ G  ++ +K+EY+M+G+LY I+ D  T  ++  +VE+YASFGGL +ML+GDPS   NF +DQ +FLL+RK+
Sbjct:   38 YMQLDVATDVYPMHPGDRFTMVLVPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGLLVMLKGDPSSAANFELDQRLFLLMRKV 148
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. TrEMBL
Match: B8AN91_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14307 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.636e-19
Identity = 51/111 (45.95%), Postives = 77/111 (69.37%), Query Frame = 3 
Query:   45 YMLLDVNTEIYPMNKKERFLLALSPSLVLN--------TKDGSVSIQEKFEYIMYGRLYDITADGLT--RSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            YM LDV T++YPM+  +RF + L P+L L+        T+ G  ++ +K+EY+M+G+LY I+ D  T  ++  +VE+YASFGGL +ML+GDPS   NF +DQ +FLL+RK+
Sbjct:  105 YMQLDVATDVYPMHPGDRFTMVLVPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGLLVMLKGDPSSAANFELDQRLFLLMRKV 215
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. TrEMBL
Match: B6SRG8_MAIZE (DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide OS=Zea mays PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.759e-19
Identity = 48/109 (44.04%), Postives = 74/109 (67.89%), Query Frame = 3 
Query:   45 YMLLDVNTEIYPMNKKERFLLALSPSLVLN--------TKDGSVSIQEKFEYIMYGRLYDITADGLTRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            YM LDV T++YPM+  E+F + ++P+L L+        T+ G  ++ + +EY+M G+LY I+ D  +    +VE+YASFGGL ++LRGDPS   +F +DQ +FLLIRK+
Sbjct:   38 YMQLDVATDVYPMHAGEKFNMVIAPTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLLMLLRGDPSTAASFELDQRLFLLIRKV 146
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. TrEMBL
Match: B4FPA6_MAIZE (DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide OS=Zea mays PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.759e-19
Identity = 48/109 (44.04%), Postives = 74/109 (67.89%), Query Frame = 3 
Query:   45 YMLLDVNTEIYPMNKKERFLLALSPSLVLN--------TKDGSVSIQEKFEYIMYGRLYDITADGLTRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            YM LDV T++YPM+  E+F + ++P+L L+        T+ G  ++ + +EY+M G+LY I+ D  +    +VE+YASFGGL ++LRGDPS   +F +DQ +FLLIRK+
Sbjct:   38 YMQLDVATDVYPMHAGEKFNMVIAPTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLLMLLRGDPSTAASFELDQRLFLLIRKV 146
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. TrEMBL
Match: O81097_ARATH (At1g54250 OS=Arabidopsis thaliana GN=AtRPABC16.5 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.216e-19
Identity = 51/110 (46.36%), Postives = 76/110 (69.09%), Query Frame = 3 
Query:   45 YMLLDVNTEIYPMNKKERFLLALSPSLVLN--------TKDGSVSIQEKFEYIMYGRLYDITA-DGLTRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            +M LDVNTE+YP+   ++F LAL+P+L L+        T     ++ +K+EYIM+G+LY I+  DG T   P+ E+Y SFGGL ++L+GDP+H  +F +DQ +FLL+RKL
Sbjct:   40 FMHLDVNTEVYPLAVGDKFTLALAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKT---PKAELYVSFGGLLMLLKGDPAHISHFELDQRLFLLMRKL 146
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. TAIR peptide
Match: AT1G54250.1 (| Symbols: ATRPABC16.5, NRPB8A, NRPE8A | RNA polymerase Rpb8 | chr1:20255210-20256335 FORWARD LENGTH=146)

HSP 1 Score: 97.0561 bits (240), Expect = 3.658e-21
Identity = 51/110 (46.36%), Postives = 76/110 (69.09%), Query Frame = 3 
Query:   45 YMLLDVNTEIYPMNKKERFLLALSPSLVLN--------TKDGSVSIQEKFEYIMYGRLYDITA-DGLTRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            +M LDVNTE+YP+   ++F LAL+P+L L+        T     ++ +K+EYIM+G+LY I+  DG T   P+ E+Y SFGGL ++L+GDP+H  +F +DQ +FLL+RKL
Sbjct:   40 FMHLDVNTEVYPLAVGDKFTLALAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKT---PKAELYVSFGGLLMLLKGDPAHISHFELDQRLFLLMRKL 146
[Close]
BLAST of Cicer_arietinum_v1_Contig3620 vs. TAIR peptide
Match: AT3G59600.1 (| Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase Rpb8 | chr3:22016629-22017923 FORWARD LENGTH=146)

HSP 1 Score: 95.9005 bits (237), Expect = 8.148e-21
Identity = 50/110 (45.45%), Postives = 76/110 (69.09%), Query Frame = 3 
Query:   45 YMLLDVNTEIYPMNKKERFLLALSPSLVLN--------TKDGSVSIQEKFEYIMYGRLYDITA-DGLTRSPPEVEVYASFGGLQLMLRGDPSHCVNFAVDQTMFLLIRKL 347
            +M LDVNTE+YP+   ++F LA++P+L L+        T     ++ +K+EYIM+G+LY I+  DG T   P+ E+Y SFGGL ++L+GDP+H  +F +DQ +FLL+RKL
Sbjct:   40 FMHLDVNTEVYPLAVGDKFTLAMAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKT---PKAELYVSFGGLLMLLQGDPAHISHFELDQRLFLLMRKL 146
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig3620 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 6
Match NameE-valueIdentityDescription
RPAB3_MOUSE1.378e-1234.55DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB3_HUMAN1.378e-1234.55DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB3_CAEBR2.599e-1130.36Probable DNA-directed RNA polymerases I, II, and I... [more]
RPAB3_DICDI5.791e-1136.19DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB3_CAEEL1.685e-1029.46Probable DNA-directed RNA polymerases I, II, and I... [more]
RPAB3_SCHPO1.335e-731.63DNA-directed RNA polymerases I, II, and III subuni... [more]
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BLAST of Cicer_arietinum_v1_Contig3620 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q5Z6G3_ORYSJ2.981e-2146.79Putative RNA polymerase I, II and III 16.5 kDa sub... [more]
A3BF08_ORYSJ2.981e-2146.79Putative uncharacterized protein OS=Oryza sativa s... [more]
A2YGL5_ORYSI2.981e-2146.79Putative uncharacterized protein OS=Oryza sativa s... [more]
B3TLS5_ELAGV4.304e-2045.60RNA polymerase OS=Elaeis guineensis var. tenera PE... [more]
A9P0G9_PICSI5.622e-2042.28Putative uncharacterized protein OS=Picea sitchens... [more]
Q84SP5_ORYSJ1.636e-1945.95Os03g0845700 protein OS=Oryza sativa subsp. japoni... [more]
B8AN91_ORYSI1.636e-1945.95Putative uncharacterized protein OS=Oryza sativa s... [more]
B6SRG8_MAIZE4.759e-1944.04DNA-directed RNA polymerases I, II, and III 17.1 k... [more]
B4FPA6_MAIZE4.759e-1944.04DNA-directed RNA polymerases I, II, and III 17.1 k... [more]
O81097_ARATH6.216e-1946.36At1g54250 OS=Arabidopsis thaliana GN=AtRPABC16.5 P... [more]
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BLAST of Cicer_arietinum_v1_Contig3620 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G54250.13.658e-2146.36| Symbols: ATRPABC16.5, NRPB8A, NRPE8A | RNA polym... [more]
AT3G59600.18.148e-2145.45| Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASE SUBUNIT RPB8coord: 8..109
score: 1.4
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 8..106
score: 3.8
IPR005570RNA polymerase, Rpb8SMARTSM00658no descriptioncoord: 2..106
score: 1.1
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140no descriptioncoord: 7..106
score: 9.3
IPR016027Nucleic acid-binding, OB-fold-likeSUPERFAMILY50249Nucleic acid-binding proteinscoord: 7..106
score: 1.5

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig3620 ID=Cicer_arietinum_v1_Contig3620; Name=Cicer_arietinum_v1_Contig3620; organism=Cicer arietinum; type=contig; length=417bp
CCGCGAAAATTTCACTAGTAGATTAGCGTAGGTCGCGGCCGAGGTACATG
CTTCTAGATGTGAATACAGAGATTTATCCTATGAACAAAAAGGAAAGATT
CTTGTTGGCTTTGTCTCCATCGCTTGTTTTAAATACCAAGGATGGCTCAG
TTTCAATCCAAGAAAAGTTTGAATACATCATGTATGGAAGGTTATATGAC
ATTACAGCAGATGGACTTACGCGTTCTCCGCCTGAAGTGGAGGTATATGC
ATCATTTGGCGGACTTCAGCTGATGCTGAGAGGGGATCCTTCCCACTGTG
TCAACTTCGCAGTTGATCAGACGATGTTTTTGCTAATAAGGAAGCTTGAA
AGTTGAACTGCTGATGTTACCTGTTGTTGAGAAGATAAACATGCTAGCTG
GCACCAAGTTTTAAGTA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Biological Process
TermDefinition
GO:0006350transcription
Vocabulary: INTERPRO
TermDefinition
IPR005570RPABC3
IPR012340NA-bd_OB-fold
IPR016027Nucleic acid-binding, OB-fold-like