Cicer_arietinum_v1_Contig3678

Contig Overview
NameCicer_arietinum_v1_Contig3678
Unique NameCicer_arietinum_v1_Contig3678
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length725
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CD051349ESTCD051349:1..406 -
GR398020ESTGR398020:109..725 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
CD051349CD051349Cicer arietinumEST
GR398020GR398020Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig3678 vs. TrEMBL
Match: B9RGI5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1454180 PE=4 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.449e-51
Identity = 106/169 (62.72%), Postives = 120/169 (71.01%), Query Frame = -2 
Query:  227 GSLYNLVLRXXXXXXXXXXKRGAMVGVDCERDEDIELVVPPVFDKCTKVLDARDQIVARDLYWEGVNCE---EGLEKSEELLVKSIEKNPFVGEPYVVLSQVYLTKGRFXXXXXXXXXXXXXXXEWGCHWDKRVFWEGWISWSRVLLMKAKEKSWPNTSWGILNLGLVK 724
            G++Y L+ R          + G  + VD ERDEDIELVVPPVFDKCT++LDAR QI ARDLYWE V C+    GL+K EELL+  IEKNP+VGEP+VVLSQVYLTK RF               EWG  WDKR  WEGWI+W RVLLMKAKEKSWPNTSWGILNLGLV+
Sbjct:  258 GAIYTLIRREEEIFVEERIRAGG-IEVDEERDEDIELVVPPVFDKCTRILDARQQIEARDLYWEAV-CDLSKRGLDKVEELLLSCIEKNPYVGEPHVVLSQVYLTKDRFEEAEREAEKGVTLMLEWGSPWDKRTSWEGWIAWGRVLLMKAKEKSWPNTSWGILNLGLVR 424
[Close]
BLAST of Cicer_arietinum_v1_Contig3678 vs. TrEMBL
Match: B9HG84_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_563393 PE=4 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.455e-51
Identity = 103/168 (61.31%), Postives = 122/168 (72.62%), Query Frame = -2 
Query:  227 GSLYNLVLRXXXXXXXXXXKRGAMVGVDCERDEDIELVVPPVFDKCTKVLDARDQIVARDLYWEGV--NCEEGLEKSEELLVKSIEKNPFVGEPYVVLSQVYLTKGRFXXXXXXXXXXXXXXXEWGCHWDKRVFWEGWISWSRVLLMKAKEKSWPNTSWGILNLGLVK 724
            G++Y+L++R          + G    VD ERDEDIELV+ PVF+ CT+VLDAR+Q+VARDLYWE V    + GLE++EELLV SIEKNPFVGEP+VVL Q YLTKGRF               EWG  WDKR+ WEGWI+W+RVLLMKAKEKSWP TSWGILNLGLV+
Sbjct:  264 GAIYSLIVREEEIFIEERKRAGGFE-VDRERDEDIELVLAPVFENCTQVLDAREQVVARDLYWEAVCDTSKGGLERAEELLVSSIEKNPFVGEPHVVLGQFYLTKGRFEEAEKEAERGVTLLLEWGSPWDKRMSWEGWIAWARVLLMKAKEKSWPQTSWGILNLGLVR 430
[Close]
BLAST of Cicer_arietinum_v1_Contig3678 vs. TrEMBL
Match: C6TLE4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 7.124e-51
Identity = 104/166 (62.65%), Postives = 121/166 (72.89%), Query Frame = -2 
Query:  230 GSLYNLVLRXXXXXXXXXXKR-GAMVGVDCERDEDIELVVPPVFDKCTKVLDARDQIVARDLYWEGVNCEEGLEKSEELLVKSIEKNPFVGEPYVVLSQVYLTKGRFXXXXXXXXXXXXXXXEWGCHWDKRVFWEGWISWSRVLLMKAKEKSWPNTSWGILNLGLV 724
            G++Y L+ R          ++ G  V  D ER+EDIELV+PPVFD C KVL+A DQIVARDLYWE V CE G  K+EELL++SIEKNPFVGEPYVVLSQVYLT+GRF               EWGC WDKR  WEGW++W+RVLLM+AK+KSWP TSWGILNLGLV
Sbjct:  265 GAVYTLIAREEEIFIQERKRKVGVAVVPDLERNEDIELVLPPVFDYCRKVLEAGDQIVARDLYWEAV-CEGG-SKAEELLLESIEKNPFVGEPYVVLSQVYLTEGRFEEAEKHAERGLKLLLEWGCPWDKRTSWEGWVAWTRVLLMRAKDKSWPQTSWGILNLGLV 428
[Close]
BLAST of Cicer_arietinum_v1_Contig3678 vs. TrEMBL
Match: A5CBP9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014471 PE=4 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.899e-44
Identity = 87/139 (62.59%), Postives = 105/139 (75.54%), Query Frame = -2 
Query:  227 RDEDIELVVPPVFDKCTKVLDARDQIVARDLYWEGVNCE---EGLEKSEELLVKSIEKNPFVGEPYVVLSQVYLTKGRFXXXXXXXXXXXXXXXEWGCHWDKRVFWEGWISWSRVLLMKAKEKSWPNTSWGILNLGLVK 634
            RDE++ELV+PPV + CT+VL A +QI A DLYWE V CE    GL+ +EELL + +EKNPFVGEP+VVL+Q+YLT GRF               EWG  WDKR+ WEGWI+W+RVLLMKAKE+SWPNTSWGI+NLGLVK
Sbjct:  265 RDEELELVIPPVLENCTRVLGAEEQIEATDLYWEAV-CEGSKRGLDWAEELLGRCVEKNPFVGEPHVVLAQIYLTNGRFEEAEREAEKGLKLMLEWGSPWDKRMTWEGWIAWNRVLLMKAKERSWPNTSWGIINLGLVK 402
[Close]
BLAST of Cicer_arietinum_v1_Contig3678 vs. TrEMBL
Match: D7LAU9_ARALY (Binding protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479517 PE=4 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.186e-43
Identity = 93/171 (54.39%), Postives = 120/171 (70.18%), Query Frame = -2 
Query:  227 GSLYNLVLRXXXXXXXXXXKR-GAMVGVDCERDEDIELVVPPVFDKCTKVLDARDQIVARDLYWEGVNCE---EG-LEKSEELLVKSIEKNPFVGEPYVVLSQVYLTKGRFXXXXXXXXXXXXXXXEWGCHWDKRVFWEGWISWSRVLLMKAKEKSWPNTSWGILNLGLVK 724
            G++Y+L++R          +  G+   V  ERDEDIELVVPPVF  CTKVLDA++QI AR++YWE V+ +   EG LE++EE L+  IEKNPFVGEP+V+LSQVYL K RF               +WG  WDKR+ WEGWI+W RVLLMK++++SWP+ SWGILNLGLV+
Sbjct:  255 GAIYSLIVREEEILMEERRRAFGSGFEVRKERDEDIELVVPPVFSFCTKVLDAKEQIEAREMYWEVVSSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFNEAEREAEKGLLLLLQWGSPWDKRMSWEGWIAWVRVLLMKSQDQSWPDVSWGILNLGLVR 425
[Close]
BLAST of Cicer_arietinum_v1_Contig3678 vs. TrEMBL
Match: Q9LHE6_ARATH (Genomic DNA, chromosome 3, P1 clone: MZE19 OS=Arabidopsis thaliana GN=At3g19990 PE=4 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.326e-43
Identity = 92/171 (53.80%), Postives = 120/171 (70.18%), Query Frame = -2 
Query:  227 GSLYNLVLRXXXXXXXXXXKR-GAMVGVDCERDEDIELVVPPVFDKCTKVLDARDQIVARDLYWEGVNCE---EG-LEKSEELLVKSIEKNPFVGEPYVVLSQVYLTKGRFXXXXXXXXXXXXXXXEWGCHWDKRVFWEGWISWSRVLLMKAKEKSWPNTSWGILNLGLVK 724
            G++Y+L++R          +  G+   V  ERDEDI+LVVPPVF  CTKVLDA++QI AR++YWE V+ +   EG LE++EE L+  IEKNPFVGEP+V+LSQVYL K RF               +WG  WDKR+ WEGWI+W RVLLMK++++SWP+ SWGILNLGLV+
Sbjct:  280 GAIYSLIVREEEILMEERRRAFGSGFEVRKERDEDIDLVVPPVFSFCTKVLDAKEQIEAREMYWEVVSSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKEAEREAEKGLLLLLQWGSPWDKRMSWEGWIAWVRVLLMKSQDQSWPDVSWGILNLGLVR 450
[Close]
BLAST of Cicer_arietinum_v1_Contig3678 vs. TrEMBL
Match: Q501F4_ARATH (At3g19990 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.326e-43
Identity = 92/171 (53.80%), Postives = 120/171 (70.18%), Query Frame = -2 
Query:  227 GSLYNLVLRXXXXXXXXXXKR-GAMVGVDCERDEDIELVVPPVFDKCTKVLDARDQIVARDLYWEGVNCE---EG-LEKSEELLVKSIEKNPFVGEPYVVLSQVYLTKGRFXXXXXXXXXXXXXXXEWGCHWDKRVFWEGWISWSRVLLMKAKEKSWPNTSWGILNLGLVK 724
            G++Y+L++R          +  G+   V  ERDEDI+LVVPPVF  CTKVLDA++QI AR++YWE V+ +   EG LE++EE L+  IEKNPFVGEP+V+LSQVYL K RF               +WG  WDKR+ WEGWI+W RVLLMK++++SWP+ SWGILNLGLV+
Sbjct:  255 GAIYSLIVREEEILMEERRRAFGSGFEVRKERDEDIDLVVPPVFSFCTKVLDAKEQIEAREMYWEVVSSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKEAEREAEKGLLLLLQWGSPWDKRMSWEGWIAWVRVLLMKSQDQSWPDVSWGILNLGLVR 425
[Close]
BLAST of Cicer_arietinum_v1_Contig3678 vs. TrEMBL
Match: Q0WTF1_ARATH (Putative uncharacterized protein At3g19990 (Fragment) OS=Arabidopsis thaliana GN=At3g19990 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.326e-43
Identity = 92/171 (53.80%), Postives = 120/171 (70.18%), Query Frame = -2 
Query:  227 GSLYNLVLRXXXXXXXXXXKR-GAMVGVDCERDEDIELVVPPVFDKCTKVLDARDQIVARDLYWEGVNCE---EG-LEKSEELLVKSIEKNPFVGEPYVVLSQVYLTKGRFXXXXXXXXXXXXXXXEWGCHWDKRVFWEGWISWSRVLLMKAKEKSWPNTSWGILNLGLVK 724
            G++Y+L++R          +  G+   V  ERDEDI+LVVPPVF  CTKVLDA++QI AR++YWE V+ +   EG LE++EE L+  IEKNPFVGEP+V+LSQVYL K RF               +WG  WDKR+ WEGWI+W RVLLMK++++SWP+ SWGILNLGLV+
Sbjct:  242 GAIYSLIVREEEILMEERRRAFGSGFEVRKERDEDIDLVVPPVFSFCTKVLDAKEQIEAREMYWEVVSSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKEAEREAEKGLLLLLQWGSPWDKRMSWEGWIAWVRVLLMKSQDQSWPDVSWGILNLGLVR 412
[Close]
BLAST of Cicer_arietinum_v1_Contig3678 vs. TrEMBL
Match: D5A926_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.540e-40
Identity = 88/169 (52.07%), Postives = 107/169 (63.31%), Query Frame = -2 
Query:  227 GSLYNLVLRXXXXXXXXXXKRGAMVGVDCERDEDIELVVPPVFDKCTKVLDARDQIVARDLYWEGVNCEEGL---EKSEELLVKSIEKNPFVGEPYVVLSQVYLTKGRFXXXXXXXXXXXXXXXEWGCHWDKRVFWEGWISWSRVLLMKAKEKSWPNTSWGILNLGLVK 724
            G+LY L++R          ++           E+IELV+PPVFD C  VL   DQ+ ARDLYWE V    G    EK+E LL K+ E NPFVGEP VVL+Q+Y ++GR+               EWG  WDKR+ WEGWI+W+RVLLMKAKEKSWP+TSWGILNLGLVK
Sbjct:  285 GALYTLIVREEKLFQREEGRKKNEEEKKKRGFEEIELVIPPVFDHCRSVLFPSDQVTARDLYWEAVCMPPGEKTHEKAETLLAKACELNPFVGEPRVVLAQIYNSQGRYDEAEKEAETGLRLMLEWGTTWDKRMSWEGWIAWTRVLLMKAKEKSWPHTSWGILNLGLVK 453
[Close]
BLAST of Cicer_arietinum_v1_Contig3678 vs. TrEMBL
Match: C5XWN8_SORBI (Putative uncharacterized protein Sb04g038120 OS=Sorghum bicolor GN=Sb04g038120 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.808e-39
Identity = 85/170 (50.00%), Postives = 109/170 (64.12%), Query Frame = -2 
Query:  227 GSLYNLVLRXXXXXXXXXXKRGAMVGVDCERDEDIELVVPPVFDKCTKVLDARDQIVARDLYWEGV----NCEEGLEKSEELLVKSIEKNPFVGEPYVVLSQVYLTKGRFXXXXXXXXXXXXXXXEWGCHWDKRVFWEGWISWSRVLLMKAKEKSWPNTSWGILNLGLVK 724
            G LYNL++R          K G  + +D  RDE+I LV+PPVF+ CTKVLD ++QI ARDLYWE +      E   EK E++L++SI+KNPFVGEP +V +QVYL   R+               EWG  WDKR+ WE W+SW RV+L KAKE  WP+T+ GI+NLGLVK
Sbjct:  264 GVLYNLIIREEELYTQERNKMGETIRLD--RDEEIMLVIPPVFNYCTKVLDPKEQIAARDLYWEAICSDDRKERDWEKVEKVLLESIQKNPFVGEPRLVAAQVYLNMERYAEAKEEAEEGLKLLLEWGISWDKRMTWESWVSWGRVMLDKAKENEWPHTAAGIINLGLVK 431
[Close]
BLAST of Cicer_arietinum_v1_Contig3678 vs. TAIR peptide
Match: AT3G19990.1 (| Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 41 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | chr3:6965671-6967102 FORWARD LENGTH=425)

HSP 1 Score: 177.563 bits (449), Expect = 6.248e-45
Identity = 92/171 (53.80%), Postives = 120/171 (70.18%), Query Frame = -2 
Query:  227 GSLYNLVLRXXXXXXXXXXKR-GAMVGVDCERDEDIELVVPPVFDKCTKVLDARDQIVARDLYWEGVNCE---EG-LEKSEELLVKSIEKNPFVGEPYVVLSQVYLTKGRFXXXXXXXXXXXXXXXEWGCHWDKRVFWEGWISWSRVLLMKAKEKSWPNTSWGILNLGLVK 724
            G++Y+L++R          +  G+   V  ERDEDI+LVVPPVF  CTKVLDA++QI AR++YWE V+ +   EG LE++EE L+  IEKNPFVGEP+V+LSQVYL K RF               +WG  WDKR+ WEGWI+W RVLLMK++++SWP+ SWGILNLGLV+
Sbjct:  255 GAIYSLIVREEEILMEERRRAFGSGFEVRKERDEDIDLVVPPVFSFCTKVLDAKEQIEAREMYWEVVSSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKEAEREAEKGLLLLLQWGSPWDKRMSWEGWIAWVRVLLMKSQDQSWPDVSWGILNLGLVR 425
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig3678 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9RGI5_RICCO2.449e-5162.72Putative uncharacterized protein OS=Ricinus commun... [more]
B9HG84_POPTR5.455e-5161.31Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
C6TLE4_SOYBN7.124e-5162.65Putative uncharacterized protein OS=Glycine max PE... [more]
A5CBP9_VITVI2.899e-4462.59Putative uncharacterized protein OS=Vitis vinifera... [more]
D7LAU9_ARALY4.186e-4354.39Binding protein OS=Arabidopsis lyrata subsp. lyrat... [more]
Q9LHE6_ARATH9.326e-4353.80Genomic DNA, chromosome 3, P1 clone: MZE19 OS=Arab... [more]
Q501F4_ARATH9.326e-4353.80At3g19990 OS=Arabidopsis thaliana PE=2 SV=1[more]
Q0WTF1_ARATH9.326e-4353.80Putative uncharacterized protein At3g19990 (Fragme... [more]
D5A926_PICSI2.540e-4052.07Putative uncharacterized protein OS=Picea sitchens... [more]
C5XWN8_SORBI2.808e-3950.00Putative uncharacterized protein Sb04g038120 OS=So... [more]
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BLAST of Cicer_arietinum_v1_Contig3678 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G19990.16.248e-4553.80| Symbols: | unknown protein; INVOLVED IN: biolog... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 21..39
score
NoneNo IPR availableSEGsegsegcoord: 14..34
score: NAcoord: 41..54
score: NAcoord: 71..88
score
NoneNo IPR availableSEGsegsegcoord: 11..30
score: NAcoord: 34..50
score
NoneNo IPR availableSEGsegsegcoord: 10..20
score: NAcoord: 107..122
score
IPR011990Tetratricopeptide-like helicalGENE3D1.25.40.10no descriptioncoord: 71..129
score: 0.0

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig3678 ID=Cicer_arietinum_v1_Contig3678; Name=Cicer_arietinum_v1_Contig3678; organism=Cicer arietinum; type=contig; length=725bp
GTATATCTATTTATCAAAAATAAGAAAATTTTAGAGTGGTCATGACATCT
ATTCGTCCACAATAAGTTTTGCCTGTGACTTAGAACACAAACAGAAAGAA
AAATAAGTATTGTATTTTCAACTCCATTCATTTATTTCACCTATTATAAA
CACCAAACTTTATACTAACTCTAACCTATAATTATTTTGATATGTTAAGC
CACACATATAAACTCAAGCAACCTTACTTTACAAGCCCCAAATTGAGGAT
ACCCCATGAAGTATTAGGCCAAGATTTCTCTTTAGCCTTCATCAACAAAA
CCCTACTCCAAGAAATCCACCCTTCCCAAAAAACCCTTTTATCCCAATGA
CACCCCCATTCAAGCAAAAGACCCAACCCTCTCTCAGCTTCTCTCTCGGC
CTCTTCAAATCTTCCTTTAGTCAAATAAACTTGACTCAACACAACATAAG
GCTCTCCCACAAATGGATTCTTCTCAATACTCTTCACCAACAACTCCTCA
CTCTTCTCCAACCCCTCTTCACAATTCACACCTTCCCAATACAAATCCCT
TGCAACTATTTGATCCCTTGCATCCAAAACCTTTGTGCATTTATCAAAAA
CTGGTGGCACAACTAACTCAATATCTTCATCTCTCTCACAATCAACACCA
ACCATAGCACCCCTTTTCTTCTTCTCTTCTATAAAAATCTCTTCCTCTCT
CAAAACCAAATTGTAAAGTGATCCC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf