Cicer_arietinum_v1_Contig3725

Contig Overview
NameCicer_arietinum_v1_Contig3725
Unique NameCicer_arietinum_v1_Contig3725
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length410
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CK148810ESTCK148810:3..194 +Cicer arietinum unigene v1n/a
HO214302ESTHO214302:32..286 +Cicer arietinum unigene v1n/a
CK148928ESTCK148928:1..410 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
CK148810CK148810Cicer arietinumEST
HO214302HO214302Cicer arietinumEST
CK148928CK148928Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig3725 vs. TrEMBL
Match: B9RP47_RICCO (Grr1, plant, putative OS=Ricinus communis GN=RCOM_0924020 PE=4 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.712e-8
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 2 
Query:  233 MSQVFGFSGDN-FCPSGSIYTNPKEASFFPSLGHQVDAYFPPQR 361
            MS++ GF+GD+ FCP GSIYTNPKE   F SLGH VD YFP ++
Sbjct:    1 MSKLCGFAGDDDFCPGGSIYTNPKELGLFLSLGHHVDVYFPSRK 44
[Close]
BLAST of Cicer_arietinum_v1_Contig3725 vs. TrEMBL
Match: B9HA53_POPTR (Ein3-binding f-box protein 3 OS=Populus trichocarpa GN=EBF3 PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.217e-7
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:  233 MSQVFGFSGDN-FCPSGSIYTNPKEASFFPSLGHQVDAYFPPQR 361
            MS+VFGF+G+N FCP G IYTN KE + F S+G  VD YFP ++
Sbjct:    1 MSKVFGFAGENDFCPGGPIYTNHKEQNLFLSIGRPVDVYFPSRK 44
[Close]
BLAST of Cicer_arietinum_v1_Contig3725 vs. TAIR peptide
Match: AT2G25490.1 (| Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 | chr2:10848018-10850275 REVERSE LENGTH=628)

HSP 1 Score: 50.8322 bits (120), Expect = 2.881e-7
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 2 
Query:  233 MSQVFGFSGDN-FCPSGSIYTNPKEASFFPSLGHQVDAYFPPQR 361
            MSQ+F F+G+N F   G+IY NPK+AS   SLG   D YFPP +
Sbjct:    1 MSQIFSFAGENDFYRRGAIYPNPKDASLLLSLGSFADVYFPPSK 44
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig3725 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 2
Match NameE-valueIdentityDescription
B9RP47_RICCO1.712e-863.64Grr1, plant, putative OS=Ricinus communis GN=RCOM_... [more]
B9HA53_POPTR4.217e-759.09Ein3-binding f-box protein 3 OS=Populus trichocarp... [more]
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BLAST of Cicer_arietinum_v1_Contig3725 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G25490.12.881e-754.55| Symbols: EBF1, FBL6 | EIN3-binding F box protein... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 30..46
score
NoneNo IPR availableSEGsegsegcoord: 71..86
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig3725 ID=Cicer_arietinum_v1_Contig3725; Name=Cicer_arietinum_v1_Contig3725; organism=Cicer arietinum; type=contig; length=410bp
GCTTTAACGTGGTCGCGGCACGAGTCTTTCTCTTTTTTTTGCCCTATGTT
CAATAGGGTTTCCACGATTTCATACATACCTTCCTAATTCTTCTTTTTCA
TATGCATATTTGCCTTCAATACTCACACACCATAATCACCGTCTTCTTAT
TGTTCTTCTTTGCTGCTTTTTTTGCTCTCTTTCGAGGGTTCTTTTCTGGA
AAACACTGCACACGGTTGTTTCAGCTGTGCCCATGTCTCAAGTCTTCGGC
TTTTCCGGTGATAACTTTTGCCCTTCTGGGTCAATATACACAAACCCCAA
GGAAGCAAGTTTCTTCCCGTCTCTTGGTCATCAAGTTGATGCCTACTTTC
CTCCTCAAAGAGATCACGCGTCAGTGTTCCATTTGTTTTCGATGGAGAAT
GGTTCACGCA
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