Cicer_arietinum_v1_Contig385

Contig Overview
NameCicer_arietinum_v1_Contig385
Unique NameCicer_arietinum_v1_Contig385
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length566
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GR391992ESTGR391992:15..348 +Cicer arietinum unigene v1n/a
GR403927ESTGR403927:17..359 +Cicer arietinum unigene v1n/a
HO062519ESTHO062519:21..369 -Cicer arietinum unigene v1n/a
GR402565ESTGR402565:238..361 -Cicer arietinum unigene v1n/a
GR406085ESTGR406085:37..362 +Cicer arietinum unigene v1n/a
HO063729ESTHO063729:19..404 +Cicer arietinum unigene v1n/a
HO062360ESTHO062360:21..369 -Cicer arietinum unigene v1n/a
GR392892ESTGR392892:15..455 +Cicer arietinum unigene v1n/a
HO063328ESTHO063328:1..531 -Cicer arietinum unigene v1n/a
GR404802ESTGR404802:17..528 +Cicer arietinum unigene v1n/a
GR397121ESTGR397121:238..496 +Cicer arietinum unigene v1n/a
GR397599ESTGR397599:87..505 -Cicer arietinum unigene v1n/a
GR398407ESTGR398407:116..483 -Cicer arietinum unigene v1n/a
GR391675ESTGR391675:371..521 +Cicer arietinum unigene v1n/a
GR398547ESTGR398547:243..517 -Cicer arietinum unigene v1n/a
GR397350ESTGR397350:133..517 +Cicer arietinum unigene v1n/a
GR397198ESTGR397198:87..566 -Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR391992GR391992Cicer arietinumEST
GR403927GR403927Cicer arietinumEST
HO062519HO062519Cicer arietinumEST
GR402565GR402565Cicer arietinumEST
GR406085GR406085Cicer arietinumEST
HO063729HO063729Cicer arietinumEST
HO062360HO062360Cicer arietinumEST
GR392892GR392892Cicer arietinumEST
HO063328HO063328Cicer arietinumEST
GR404802GR404802Cicer arietinumEST
GR397121GR397121Cicer arietinumEST
GR397599GR397599Cicer arietinumEST
GR398407GR398407Cicer arietinumEST
GR391675GR391675Cicer arietinumEST
GR398547GR398547Cicer arietinumEST
GR397350GR397350Cicer arietinumEST
GR397198GR397198Cicer arietinumEST


Homology
BLAST of Cicer_arietinum_v1_Contig385 vs. TrEMBL
Match: C6T285_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.379e-19
Identity = 50/75 (66.67%), Postives = 59/75 (78.67%), Query Frame = 1
Query:  100 GSLLETSFAGR-GSNFIKISTGDLSAVQKVTTRNEMNEEEVSNIHERLLRANTKDYGRYDPTPTFSKPPFKLIPN 321
            G LL TSFAGR  SN IK    D++A+++ T R  +N+EEV  IHERLLRANTKDYGRYDP+P+ SKPPFKLIPN
Sbjct:   19 GPLLSTSFAGRVRSNSIKNFAKDVNAIEEGTPRKPLNKEEVRTIHERLLRANTKDYGRYDPSPSLSKPPFKLIPN 93          
BLAST of Cicer_arietinum_v1_Contig385 vs. TrEMBL
Match: A5B4Y5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041720 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.637e-12
Identity = 41/103 (39.81%), Postives = 55/103 (53.40%), Query Frame = 1
Query:   25 KIYQVVLNMDFMXXXXXXXXXXXXXGSLLETSFAGRGSNFIKISTGDL----SAVQKVTTRNEMNEEEVSNIHERLLRANTKDYGRYDPTPTFSKPPFKLIPN 321
            KI+  + NM  M   X          S L TSFAGR     K+++  +    +  ++++ +   +      IHERLLRANT+DYG YDP P   KPPFKLIPN
Sbjct:  147 KIFISLSNMGXMLLKXISLLFLLISASFLSTSFAGRAGRRSKLASKSIXVADAVFKEISRKPSHHYRRAEAIHERLLRANTRDYGNYDPAPALGKPPFKLIPN 249          
BLAST of Cicer_arietinum_v1_Contig385 vs. TrEMBL
Match: D7U4L9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00023821001 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.805e-11
Identity = 39/77 (50.65%), Postives = 47/77 (61.04%), Query Frame = 1
Query:  103 SLLETSFAGRGSNFIKISTGDL---SAVQKVTTRNEMNE-EEVSNIHERLLRANTKDYGRYDPTPTFSKPPFKLIPN 321
            S L TSFAGR     K+++  +    AV K  +R   ++      IHERLLRANT+DYG YDP P   KPPFKLIPN
Sbjct:   19 SFLSTSFAGRAGRRSKLASKSIHVADAVFKEISRKPSHQYRRAEAIHERLLRANTRDYGNYDPAPALGKPPFKLIPN 95          
BLAST of Cicer_arietinum_v1_Contig385 vs. TrEMBL
Match: B9HRJ9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_557216 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.606e-10
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  103 SLLETSFAGRGSNFIKISTGDL---SAVQKVTTRNEMNEEEVSNIHERLLRANTKDYGRYDPTPTFSKPPFKLIPN 321
            S L TSFAGR S  +     ++   +A  +  +    +  E + IHERLL+ANTKDYG Y P P   +PPFKLIPN
Sbjct:   19 SFLSTSFAGRRSKSVNKLAEEVEVSAATYEEISSKPSHNNEATTIHERLLKANTKDYGNYKPAPALVRPPFKLIPN 94          
BLAST of Cicer_arietinum_v1_Contig385 vs. TrEMBL
Match: Q84MD2_ARATH (At2g16386 OS=Arabidopsis thaliana GN=At2g16385 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.763e-9
Identity = 36/73 (49.32%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  103 SLLETSFAGRGSNFIKISTGDLSAVQKVTTRNEMNEEEVSNIHERLLRANTKDYGRYDPTPTFSKPPFKLIPN 321
            S L  SFAGR S F+          +K+  R EM E  +   HERLLR NTKDYG   P+P   +PPFKLIPN
Sbjct:   21 SALSVSFAGRPSIFVH---------KKINLREEMVERSMHE-HERLLRMNTKDYGNNSPSPRLERPPFKLIPN 83          
BLAST of Cicer_arietinum_v1_Contig385 vs. TrEMBL
Match: D7L1V3_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_480802 PE=4 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.211e-7
Identity = 34/73 (46.58%), Postives = 41/73 (56.16%), Query Frame = 1
Query:  103 SLLETSFAGRGSNFIKISTGDLSAVQKVTTRNEMNEEEVSNIHERLLRANTKDYGRYDPTPTFSKPPFKLIPN 321
            S L  SFAGR S  +            +  R+EM E  + + HERLLR NTKDYG   P+P   +PPFKLIPN
Sbjct:   21 SALSVSFAGRPSVLVHTH---------IDLRDEMVERSMHD-HERLLRMNTKDYGHNSPSPRLERPPFKLIPN 83          
BLAST of Cicer_arietinum_v1_Contig385 vs. TAIR peptide
Match: AT2G16385.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:7094882-7095557 FORWARD LENGTH=83)

HSP 1 Score: 65.0846 bits (157), Expect = 2.979e-11
Identity = 36/73 (49.32%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  103 SLLETSFAGRGSNFIKISTGDLSAVQKVTTRNEMNEEEVSNIHERLLRANTKDYGRYDPTPTFSKPPFKLIPN 321
            S L  SFAGR S F+          +K+  R EM E  +   HERLLR NTKDYG   P+P   +PPFKLIPN
Sbjct:   21 SALSVSFAGRPSIFVH---------KKINLREEMVERSMHE-HERLLRMNTKDYGNNSPSPRLERPPFKLIPN 83          
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig385 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 6
Match NameE-valueIdentityDescription
C6T285_SOYBN1.379e-1966.67Putative uncharacterized protein OS=Glycine max PE... [more]
A5B4Y5_VITVI3.637e-1239.81Putative uncharacterized protein OS=Vitis vinifera... [more]
D7U4L9_VITVI1.805e-1150.65Whole genome shotgun sequence of line PN40024, sca... [more]
B9HRJ9_POPTR2.606e-1046.05Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q84MD2_ARATH3.763e-949.32At2g16386 OS=Arabidopsis thaliana GN=At2g16385 PE=... [more]
D7L1V3_ARALY1.211e-746.58Putative uncharacterized protein OS=Arabidopsis ly... [more]
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BLAST of Cicer_arietinum_v1_Contig385 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G16385.12.979e-1149.32| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 15..27
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig385 ID=Cicer_arietinum_v1_Contig385; Name=Cicer_arietinum_v1_Contig385; organism=Cicer arietinum; type=contig; length=566bp
TAGCGTGGTCGCGGCTGATGTAGAAAAATATACCAAGTGGTACTCAACAT
GGATTTCATGATTCTCAAGAAGTTCATTCTTCTCTTCCTCTTCATATTTG
GATCACTTTTGGAGACTTCTTTTGCAGGTCGAGGATCAAACTTCATCAAA
ATCTCAACTGGAGATTTGAGTGCAGTTCAAAAGGTAACAACAAGGAATGA
AATGAATGAGGAAGAAGTAAGCAACATCCACGAGAGGCTTCTTAGGGCTA
ATACAAAAGATTATGGACGATATGACCCAACTCCAACTTTTTCTAAGCCT
CCTTTCAAGCTCATACCAAATTGAATTAACGTTCAATAAATGAATCTCGG
AAGTTATATATAGTATCGTAATAACAACTAAGTACTATAAATAATCCAGT
GTTTACCTTAGTGTAATATATGCCCCATATATATCATATAAACATGTATA
AATATAAATGCTTAGTCATGTTTTGAAGTCTAATATAGAGTTTTATAAAA
GAAGATGTACTTGTGTTTTTGAAGTTTTATTTATATATATATATATATAT
ATATAGTTTTGCTCTG
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