Cicer_arietinum_v1_Contig411

Contig Overview
NameCicer_arietinum_v1_Contig411
Unique NameCicer_arietinum_v1_Contig411
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length628
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
HO067904ESTHO067904:18..382 +Cicer arietinum unigene v1n/a
HO067845ESTHO067845:1..628 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
HO067904HO067904Cicer arietinumEST
HO067845HO067845Cicer arietinumEST


InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifSMARTSM00384no descriptioncoord: 79..91
score: 0.59coord: 101..113
score: 5.1coord: 145..157
score
IPR020478AT hook-likePRINTSPR00929ATHOOKcoord: 79..89
score: 2.3e-07coord: 99..110
score: 2.3e-07coord: 143..153
score: 2.3
NoneNo IPR availableSEGsegsegcoord: 61..87
score
NoneNo IPR availableSEGsegsegcoord: 8..28
score: NAcoord: 30..41
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig411 ID=Cicer_arietinum_v1_Contig411; Name=Cicer_arietinum_v1_Contig411; organism=Cicer arietinum; type=contig; length=628bp
GGGCTGAAGGGTTGATTGAGCGTCGAGTATTGCGCTCAAGGTCTAAGAGG
GGCGATGACAAAATATCTTATAATGGAGGGAATGATGGTGTCTTTTCTGG
GAGTAATGGAGAAAATGGTGGGTTTGAGAGGAGGATAAAAGTCAAGACGG
AGTATGAAGAAGTTGACGAGGATTTAACTGATGGCAACAAGAATGAAAAG
GTTAAGGTAAAAGTGGGAGGTCAGGGGAAGAAGTTGAAACGGAAGCGTGG
GAGGCCTCCCAAAACAGAGTTAAAAGAGAAAGATCAATTAGTTGATAAGC
CACAGCGTAAGCTTGGGAGGCCTCCCAAAACAGAGTTAAAAGAGAACAAT
CAGTTACTTGATCAGCCACTGCGTAAGCGTGGTAGGCGTCCCAAAACAGA
GATAAAAGAGAAGGATTGGTTAGTTGATCAGTCACCGCGGAAGCGTGGAA
GACGCCCCAAGACTGACCAACAAAAACATCTCATGACTGTGGGGCATAAT
AGTAAAGGAAAGGCAAGCCTTCAAGAAGGTAAAGAAGTTTTAACCATAAG
AGATGGTTCAAGGACAAATGCAGTTGATAATACATGTTCAAGGAGATCTT
CTGGTAAAGAGTTAAAAGAGAAGGGATC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif
IPR020478AT_hook-like