Cicer_arietinum_v1_Contig428

Contig Overview
NameCicer_arietinum_v1_Contig428
Unique NameCicer_arietinum_v1_Contig428
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length405
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
HO067717ESTHO067717:1..405 +Cicer arietinum unigene v1n/a
GR402264ESTGR402264:4..387 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
HO067717HO067717Cicer arietinumEST
GR402264GR402264Cicer arietinumEST


Homology
BLAST of Cicer_arietinum_v1_Contig428 vs. TrEMBL
Match: C6SY67_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.973e-13
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:   17 MKKTVGAVMILFLIFSQMESVDPSSADCLDACTTARVQRDTRLMQRCEGKCQIRCGP 187
            MKK V A+M+  LI +QM+SV+P +ADC D C+TA VQ D+RL  RCE KC IRCGP
Sbjct:    1 MKKMVAAMMLFLLISTQMKSVEPDAADCSDGCSTACVQSDSRLQARCERKCSIRCGP 57          
BLAST of Cicer_arietinum_v1_Contig428 vs. TrEMBL
Match: C6SXB9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.847e-11
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:   38 VMILFLIFSQMESVDPSSADCLDACTTARVQRDTRLMQRCEGKCQIRCGP 187
            ++I  LI +QMESV+P + DCLD CTTA VQ D+RL  RC+ KC IRCGP
Sbjct:    1 MLIFLLISTQMESVEPDAVDCLDGCTTACVQSDSRLQARCDRKCSIRCGP 50          
BLAST of Cicer_arietinum_v1_Contig428 vs. TrEMBL
Match: B9ICJ2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_666830 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.413e-10
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 2
Query:   14 MMKKTVGAVMILFLIFSQMESVDPSSADCLDACTTARVQRDTRLMQRCEGKCQIRCGP 187
            MM+K + AV+I+ ++ S  E+V   ++DC DACTT  VQ +TRLM+RCE KC IRCGP
Sbjct:    1 MMRKILVAVLIVSMVASHFENVASDASDCNDACTTGCVQSNTRLMRRCEIKCGIRCGP 58          
BLAST of Cicer_arietinum_v1_Contig428 vs. TrEMBL
Match: B9ICJ4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_575561 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.112e-10
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 2
Query:   14 MMKKTVGAVMILFLIFSQMESVDPSSADCLDACTTARVQRDTRLMQRCEGKCQIRCGP 187
            MM+K + AV+I+ ++ S  E+V   ++DC+DACTT  VQ +TRL  RC+ KC IRCGP
Sbjct:    1 MMRKVLVAVLIVSMVASHFENVASDASDCMDACTTGCVQSNTRLTSRCDIKCGIRCGP 58          
BLAST of Cicer_arietinum_v1_Contig428 vs. TrEMBL
Match: B9ICH8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_666826 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.160e-10
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 2
Query:   14 MMKKTVGAVMILFLIFSQMESVDPSSADCLDACTTARVQRDTRLMQRCEGKCQIRCGP 187
            MM+K + AV+I+ ++ S  E+V   ++DC DACTT  VQ +TRL++RC+ KC IRCGP
Sbjct:    1 MMRKILVAVLIVSMVASHFENVASDASDCDDACTTGCVQSNTRLLRRCDIKCGIRCGP 58          
BLAST of Cicer_arietinum_v1_Contig428 vs. TrEMBL
Match: B9P5Z6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_591429 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.665e-9
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 2
Query:   14 MMKKTVGAVMILFLIFSQMESVDPSSADCLDACTTARVQRDTRLMQRCEGKCQIRCGP 187
            MM+K + AV+I+ ++ S  E+V   ++DC DACTT  VQ +TRL  RC+ KC IRCGP
Sbjct:    1 MMRKILVAVLIVSMVASHFENVASDASDCDDACTTGCVQSNTRLSSRCDIKCGIRCGP 58          
BLAST of Cicer_arietinum_v1_Contig428 vs. TAIR peptide
Match: AT1G25275.3 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:8860719-8861156 FORWARD LENGTH=85)

HSP 1 Score: 54.6842 bits (130), Expect = 1.958e-8
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 2
Query:   14 MMKKTV---GAVMILFLIFSQMESVDPSS---ADCLDACTTARVQRDTRLMQRCEGKCQIRCGP 187
            MMKK V    A++I+  + S +  V  +     DC D C+TA VQRD R   RC+ KC IRCGP
Sbjct:    1 MMKKQVTIVAALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIRCGP 64          
BLAST of Cicer_arietinum_v1_Contig428 vs. TAIR peptide
Match: AT1G25275.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8860719-8861156 FORWARD LENGTH=74)

HSP 1 Score: 54.6842 bits (130), Expect = 1.958e-8
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 2
Query:   14 MMKKTV---GAVMILFLIFSQMESVDPSS---ADCLDACTTARVQRDTRLMQRCEGKCQIRCGP 187
            MMKK V    A++I+  + S +  V  +     DC D C+TA VQRD R   RC+ KC IRCGP
Sbjct:    1 MMKKQVTIVAALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIRCGP 64          
BLAST of Cicer_arietinum_v1_Contig428 vs. TAIR peptide
Match: AT1G25275.2 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:8860719-8861156 FORWARD LENGTH=74)

HSP 1 Score: 52.7582 bits (125), Expect = 7.439e-8
Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 2
Query:   14 MMKKTV---GAVMILFLIFSQMESVDPSS---ADCLDACTTARVQRDTRLMQRCEGKCQIRCGP 187
            MMKK V    A++I+  + S +  V  +     DC D C+TA VQRD     RC+ KC IRCGP
Sbjct:    1 MMKKQVTIVAALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDREKTSRCDRKCSIRCGP 64          
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig428 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 6
Match NameE-valueIdentityDescription
C6SY67_SOYBN3.973e-1361.40Putative uncharacterized protein OS=Glycine max PE... [more]
C6SXB9_SOYBN2.847e-1162.00Putative uncharacterized protein OS=Glycine max PE... [more]
B9ICJ2_POPTR1.413e-1055.17Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9ICJ4_POPTR4.112e-1051.72Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9ICH8_POPTR9.160e-1051.72Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9P5Z6_POPTR2.665e-951.72Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of Cicer_arietinum_v1_Contig428 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G25275.31.958e-845.31| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
AT1G25275.11.958e-845.31| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
AT1G25275.27.439e-843.75| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 7..23
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig428 ID=Cicer_arietinum_v1_Contig428; Name=Cicer_arietinum_v1_Contig428; organism=Cicer arietinum; type=contig; length=405bp
AAAGGGTGTGAAGATGATGAAGAAGACGGTGGGTGCTGTGATGATTTTAT
TTTTGATATTTTCTCAAATGGAGAGCGTTGATCCCTCTTCTGCTGATTGT
CTTGATGCTTGCACCACTGCCCGCGTTCAAAGAGACACAAGACTTATGCA
ACGCTGTGAAGGCAAGTGCCAGATTAGATGCGGTCCAGATTCCGTTGTGG
AGGAGGAAATGGATTGAGTAAGCTAGCAAGTCTTCCTTAATAGCTTCACA
AATTCCTGCCCTGGTGCCTCTTAGTTATAGTTTTTAATTAGTGAAATAAA
TATTAATTACCTTCTCAATACTTTTAAAGCTTGTTTCTTGTTGTATTATT
ACCTTCTAAATAAATTTGGATGAGGGGAAAGCGTTTTGAGATCAATTTTG
TTCAT
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