Cicer_arietinum_v1_Contig444

Contig Overview
NameCicer_arietinum_v1_Contig444
Unique NameCicer_arietinum_v1_Contig444
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length830
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GR398717ESTGR398717:53..162 +
HO067828ESTHO067828:244..349 +
HO067644ESTHO067644:1..582 +
HO067345ESTHO067345:65..651 +
HO067643ESTHO067643:72..659 +
HO067642ESTHO067642:236..657 +
HO067645ESTHO067645:53..671 -
HO067641ESTHO067641:61..664 +
HO067646ESTHO067646:62..669 -
HO067396ESTHO067396:63..705 -
HO067397ESTHO067397:181..710 -
HO067647ESTHO067647:232..830 -
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR398717GR398717Cicer arietinumEST
HO067828HO067828Cicer arietinumEST
HO067644HO067644Cicer arietinumEST
HO067345HO067345Cicer arietinumEST
HO067643HO067643Cicer arietinumEST
HO067642HO067642Cicer arietinumEST
HO067645HO067645Cicer arietinumEST
HO067641HO067641Cicer arietinumEST
HO067646HO067646Cicer arietinumEST
HO067396HO067396Cicer arietinumEST
HO067397HO067397Cicer arietinumEST
HO067647HO067647Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig444 vs. SwissProt
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 5.846e-7
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = -2 
Query:  743 VEFWICLILTILGYLPGIIYAIYAITK 823
            VEFWICL+LT+LGY+PGIIYAIY +TK
Sbjct:   28 VEFWICLVLTLLGYIPGIIYAIYVLTK 54
[Close]
BLAST of Cicer_arietinum_v1_Contig444 vs. SwissProt
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 7.636e-7
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = -2 
Query:  743 EFWICLILTILGYLPGIIYAIYAITK 820
            EFWICL+LT LGY+PGIIYAIYAITK
Sbjct:   30 EFWICLLLTFLGYIPGIIYAIYAITK 55
[Close]
BLAST of Cicer_arietinum_v1_Contig444 vs. SwissProt
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 7.636e-7
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = -2 
Query:  743 EFWICLILTILGYLPGIIYAIYAITK 820
            EFWICL+LT LGY+PGIIYAIYAITK
Sbjct:   30 EFWICLLLTFLGYIPGIIYAIYAITK 55
[Close]
BLAST of Cicer_arietinum_v1_Contig444 vs. TrEMBL
Match: Q2HRS6_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MtrDRAFT_AC157894g19v2 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.782e-7
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -2 
Query:  743 VEFWICLILTILGYLPGIIYAIYAITK 823
            VEFWICLILTILGYLPGIIYAIYAITK
Sbjct:   28 VEFWICLILTILGYLPGIIYAIYAITK 54
[Close]
BLAST of Cicer_arietinum_v1_Contig444 vs. TAIR peptide
Match: AT3G05880.1 (| Symbols: RCI2A | Low temperature and salt responsive protein family | chr3:1756195-1756494 REVERSE LENGTH=54)

HSP 1 Score: 55.0694 bits (131), Expect = 5.712e-8
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = -2 
Query:  743 VEFWICLILTILGYLPGIIYAIYAITK 823
            VEFWICL+LT+LGY+PGIIYAIY +TK
Sbjct:   28 VEFWICLVLTLLGYIPGIIYAIYVLTK 54
[Close]
BLAST of Cicer_arietinum_v1_Contig444 vs. TAIR peptide
Match: AT3G05890.1 (| Symbols: RCI2B | Low temperature and salt responsive protein family | chr3:1758179-1758452 REVERSE LENGTH=54)

HSP 1 Score: 53.5286 bits (127), Expect = 1.662e-7
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = -2 
Query:  743 VEFWICLILTILGYLPGIIYAIYAITK 823
            VEFWICLILT+ GYLPGI+YA+Y ITK
Sbjct:   28 VEFWICLILTLFGYLPGILYALYIITK 54
[Close]
BLAST of Cicer_arietinum_v1_Contig444 vs. TAIR peptide
Match: AT2G38905.1 (| Symbols: | Low temperature and salt responsive protein family | chr2:16244218-16244472 REVERSE LENGTH=54)

HSP 1 Score: 51.6026 bits (122), Expect = 6.315e-7
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = -2 
Query:  749 VEFWICLILTILGYLPGIIYAIYAI 823
            VEFWICL+LTILGY+PGIIYAIY +
Sbjct:   28 VEFWICLLLTILGYIPGIIYAIYVL 52
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig444 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
RCI2A_ARATH5.846e-781.48Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
LTI6B_ORYSJ7.636e-788.46Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI7.636e-788.46Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
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BLAST of Cicer_arietinum_v1_Contig444 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 1
Match NameE-valueIdentityDescription
Q2HRS6_MEDTR4.782e-7100.00Putative uncharacterized protein OS=Medicago trunc... [more]
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BLAST of Cicer_arietinum_v1_Contig444 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G05880.15.712e-881.48| Symbols: RCI2A | Low temperature and salt respon... [more]
AT3G05890.11.662e-781.48| Symbols: RCI2B | Low temperature and salt respon... [more]
AT2G38905.16.315e-784.00| Symbols: | Low temperature and salt responsive ... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 35..48
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig444 ID=Cicer_arietinum_v1_Contig444; Name=Cicer_arietinum_v1_Contig444; organism=Cicer arietinum; type=contig; length=830bp
TAAAAAAATAATTTTTTCTTTTAAATAGATAAATAATATCCAAATAGAAG
CGATCTCAGATTTAACAATGAATATTGAAGTGAATATATTTAAAGTCAAT
GACACATGAACAAGATTATTGAGACGGAGTAATAATAGAGTTTACATCAC
AAGCTTCACACAGGACAAAAACTGAAGTTAAAAACAGAGCAAAAAGGAAA
TAGAATATTGACACTAAAAGAGATAAAAAAAAGAATCACTTTTGTTCTGA
ATTGAACGCCCTTGAAAACTATTCATGATACACCTGTCAGCAAAAAAAGC
ATCGAATATTTTTCACTGTTAGTAGTGGAAACTTAACAAAACAAAAAGTA
AGGTCCTATCAATTTCTTGTAATTGAAGGAAAATATAACAAAACAAAAAA
CAAGACGAAGCATCATAATTATTTAGCAAGCAGACAGCATCTATTCCAAC
TTCTTCCTCCTTTCATATTTTCCAAATAATGAAAATTATATCCCTTTTCT
ACAAGAGTTTCATAAAGGGTTTGGCGTTTGATATTTGGTATTAACAATTT
TTCTCTTCCTTGATTAATTACTGACTATTAATATTTGTCACTAAAAAATA
CAAGCCTTAGTCTAATTTAGTAAAATTTAAGCACATGACTGAAAATTGTA
GTTAATATTATAAAATTTCGAACAAGTAGATAGAAAAGGGGTAAAAACGG
TACTTACAAAAGATAAATTGAGGAGTACATAGCTGATGATCACTTAGTTA
TAGCATAGATGGCATATATAATTCCAGGAAGATAGCCTAAAATGGTAAGT
ATCAAACAGATCCAGAACTCAACCTATATA
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