Cicer_arietinum_v1_Contig447

Contig Overview
NameCicer_arietinum_v1_Contig447
Unique NameCicer_arietinum_v1_Contig447
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length343
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
DY475529ESTDY475529:36..290 +
HO067590ESTHO067590:1..333 -
HO664203ESTHO664203:63..343 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
DY475529DY475529Cicer arietinumEST
HO067590HO067590Cicer arietinumEST
HO664203HO664203Cicer arietinumEST


Homology
BLAST of Cicer_arietinum_v1_Contig447 vs. TrEMBL
Match: B9RM05_RICCO (Cohesin subunit rad21, putative OS=Ricinus communis GN=RCOM_1076750 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.177e-17
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   73 LSCTEDIRRVRKKAPCTRHEILMIQRQFLEDKIFQEPIFTDLSADLTILRNETFDLSGIEVCDYGLDGF-SVEKAKDQESYSKTSTCPGG 339
            L+ TEDIRR+RKKAPCTR EILMIQRQFLED+IF EP+ T +SA LT + +E FD SGI+VC+   +   S+E   D+ S  +     GG
Sbjct:  722 LTNTEDIRRLRKKAPCTRTEILMIQRQFLEDEIFSEPVLTGMSAYLTRMHSEAFDWSGIKVCENDDNNMASLEVVNDEHSARQIVKQDGG 811          
BLAST of Cicer_arietinum_v1_Contig447 vs. TrEMBL
Match: B9HHZ7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_820452 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.301e-16
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   73 LSCTEDIRRVRKKAPCTRHEILMIQRQFLEDKIFQEPIFTDLSADLTILRNETFDLSGIEVCDYGLDGFSVEKAKD 300
            L+ TEDIRR+RKKAPCTR EILMIQRQ L+++IF EP+ T +SA+LT L +ETFDLS IE+ D   +  SV  AKD
Sbjct:  698 LTNTEDIRRIRKKAPCTRTEILMIQRQSLDEEIFSEPVLTGMSAELTCLHSETFDLSRIEIDDNDDNNASV-VAKD 772          
BLAST of Cicer_arietinum_v1_Contig447 vs. TrEMBL
Match: B9HYG2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_724314 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.220e-16
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   73 LSCTEDIRRVRKKAPCTRHEILMIQRQFLEDKIFQEPIFTDLSADLTILRNETFDLSGIEVCDYGLDGFSVEKAKD 300
            L+ TEDIRR+RKKAPCTR EIL IQRQ L+++IF EP+ T +SA+LT L++ETFDLS I++ +   +  S E AKD
Sbjct:  586 LTNTEDIRRLRKKAPCTRTEILTIQRQSLDEEIFSEPVLTGMSAELTCLQSETFDLSRIDLAENDDNNTSSEVAKD 661          
BLAST of Cicer_arietinum_v1_Contig447 vs. TrEMBL
Match: D7SYP7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_220.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00004000001 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.899e-16
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   73 LSCTEDIRRVRKKAPCTRHEILMIQRQFLEDKIFQEPIFTDLSADLTILRNETFDLSGIEVCDYGLDGFSVEKAKDQE 306
            L+ TEDIRRVRKKAPCTR EI MIQ+QFLED+IF EPI T +SA+L  L NET+DLS + V +   +  S E AK+ E
Sbjct:  698 LTSTEDIRRVRKKAPCTRLEIWMIQKQFLEDEIFSEPISTGMSAELMSLYNETYDLSTVRVFE---NNASSEVAKEME 772          
BLAST of Cicer_arietinum_v1_Contig447 vs. TrEMBL
Match: Q8W1Y0_ARATH (RAD21-3 OS=Arabidopsis thaliana GN=At5g16270 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.031e-13
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   73 LSCTEDIRRVRKKAPCTRHEILMIQRQFLEDKIFQEPIFTDLSADLTILRNETFDLSGIEVCDYGLDGFSVEKAKDQE 306
            L+ TEDIRRVRKKAPCT  EI+M+QRQ LED +F+EPIFT +S +L  L  E +DL GI + +      SV   +D E
Sbjct:  578 LTNTEDIRRVRKKAPCTVPEIVMLQRQALEDGLFKEPIFTGMSVELVSLHTEPYDLRGIMIIENDDRHASVGAVEDNE 655          
BLAST of Cicer_arietinum_v1_Contig447 vs. TrEMBL
Match: D7M830_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_909607 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.031e-13
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   73 LSCTEDIRRVRKKAPCTRHEILMIQRQFLEDKIFQEPIFTDLSADLTILRNETFDLSGIEVCDYGLDGFSVEKAKDQE 306
            L+ TEDIRRVRKKAPCT  EI+M+QRQ LED + +EPIFT +S +L  L NE +DL GI + +      SV   +D E
Sbjct:  581 LTNTEDIRRVRKKAPCTIPEIVMLQRQALEDGLLKEPIFTGMSVELVSLHNEPYDLRGIMIIENDDHHASVGVVEDNE 658          
BLAST of Cicer_arietinum_v1_Contig447 vs. TrEMBL
Match: Q9LF01_ARATH (Putative uncharacterized protein T21H19_190 OS=Arabidopsis thaliana GN=T21H19_190 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.646e-11
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   73 LSCTEDIRRVRKKAPCTRHEILMIQRQFLEDKIFQEPIFTDLSADLTILRNETFDLSGIEVCDYGLDGFSVEKAKDQE 306
            L+ TEDIRRVRKKAPCT  EI+M+QRQ LED +F+EPIFT    +L  L  E +DL GI + +      SV   +D E
Sbjct:  571 LTNTEDIRRVRKKAPCTVPEIVMLQRQALEDGLFKEPIFT---VELVSLHTEPYDLRGIMIIENDDRHASVGAVEDNE 645          
BLAST of Cicer_arietinum_v1_Contig447 vs. TrEMBL
Match: C5XFD5_SORBI (Putative uncharacterized protein Sb03g042710 OS=Sorghum bicolor GN=Sb03g042710 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.820e-10
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   82 TEDIRRVRKKAPCTRHEILMIQRQFLEDKIFQEPIFTDLSADLTILRNETFD 237
            TEDIRR+RKKAPCTR EI MI++  LED IF EPIF+ LS +L  L N T++
Sbjct:  642 TEDIRRIRKKAPCTRSEIWMIEKGSLEDDIFHEPIFSCLSEELNELHNRTYE 693          
BLAST of Cicer_arietinum_v1_Contig447 vs. TrEMBL
Match: C0PFB6_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.820e-10
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   82 TEDIRRVRKKAPCTRHEILMIQRQFLEDKIFQEPIFTDLSADLTILRNETFD 237
            TEDIRR+RKKAPCTR EI MI++  LED IF EPIF+ LS +L  L N T++
Sbjct:  646 TEDIRRIRKKAPCTRSEIWMIEKGSLEDDIFHEPIFSCLSEELNKLHNRTYE 697          
BLAST of Cicer_arietinum_v1_Contig447 vs. TrEMBL
Match: Q7XYH6_ORYSI (Cohesin-like protein OS=Oryza sativa subsp. indica GN=OsI_04789 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.433e-9
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   73 LSCTEDIRRVRKKAPCTRHEILMIQRQFLEDKIFQEPIFTDLSADLTILRNETFDL 240
            L  TEDIRR+RKKAPCTR EI MI++  LED IF EPIF+ +  +L  L+  T+++
Sbjct:  634 LISTEDIRRIRKKAPCTRSEIWMIEKGSLEDDIFHEPIFSCMCKELNDLQYRTYEI 689          
BLAST of Cicer_arietinum_v1_Contig447 vs. TAIR peptide
Match: AT5G16270.1 (| Symbols: ATRAD21.3, SYN4 | sister chromatid cohesion 1 protein 4 | chr5:5316783-5322330 FORWARD LENGTH=1031)

HSP 1 Score: 79.7221 bits (195), Expect = 3.988e-16
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   73 LSCTEDIRRVRKKAPCTRHEILMIQRQFLEDKIFQEPIFTDLSADLTILRNETFDLSGIEVCDYGLDGFSVEKAKDQE 306
            L+ TEDIRRVRKKAPCT  EI+M+QRQ LED +F+EPIFT +S +L  L  E +DL GI + +      SV   +D E
Sbjct:  578 LTNTEDIRRVRKKAPCTVPEIVMLQRQALEDGLFKEPIFTGMSVELVSLHTEPYDLRGIMIIENDDRHASVGAVEDNE 655          
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig447 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9RM05_RICCO1.177e-1755.56Cohesin subunit rad21, putative OS=Ricinus communi... [more]
B9HHZ7_POPTR1.301e-1663.16Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9HYG2_POPTR2.220e-1659.21Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7SYP7_VITVI2.899e-1661.54Whole genome shotgun sequence of line PN40024, sca... [more]
Q8W1Y0_ARATH1.031e-1353.85RAD21-3 OS=Arabidopsis thaliana GN=At5g16270 PE=2 ... [more]
D7M830_ARALY1.031e-1353.85Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q9LF01_ARATH1.646e-1152.56Putative uncharacterized protein T21H19_190 OS=Ara... [more]
C5XFD5_SORBI1.820e-1063.46Putative uncharacterized protein Sb03g042710 OS=So... [more]
C0PFB6_MAIZE1.820e-1063.46Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
Q7XYH6_ORYSI3.433e-955.36Cohesin-like protein OS=Oryza sativa subsp. indica... [more]
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BLAST of Cicer_arietinum_v1_Contig447 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G16270.13.988e-1653.85| Symbols: ATRAD21.3, SYN4 | sister chromatid cohe... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig447 ID=Cicer_arietinum_v1_Contig447; Name=Cicer_arietinum_v1_Contig447; organism=Cicer arietinum; type=contig; length=343bp
CCCCCCCTAGATTGCTTCTCACAATAGCAAAATAATTAAGCACCTAAGAA
CGTAAACTTGGCTCTCTGCATACTTAGTTGTACTGAAGACATACGTCGTG
TGCGGAAAAAAGCTCCTTGCACTCGCCATGAGATTTTAATGATTCAAAGA
CAGTTTTTGGAGGATAAAATTTTCCAGGAACCAATATTTACAGATTTATC
TGCTGATTTGACTATTCTGCGAAATGAGACATTTGATCTGAGTGGAATCG
AGGTTTGTGATTATGGTTTAGATGGCTTTTCCGTGGAAAAAGCAAAAGAT
CAAGAGTCCTATTCTAAAACAAGTACCTGCCCGGGCGGCCGCT
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