Cicer_arietinum_v1_Contig456

Contig Overview
NameCicer_arietinum_v1_Contig456
Unique NameCicer_arietinum_v1_Contig456
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length585
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
HO067552ESTHO067552:1..385 +
HO068023ESTHO068023:322..585 -
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
HO067552HO067552Cicer arietinumEST
HO068023HO068023Cicer arietinumEST


Homology
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BLAST of Cicer_arietinum_v1_Contig456 vs. TrEMBL
Match: B9S5T3_RICCO (Nuclear transcription factor Y subunit A-3, putative OS=Ricinus communis GN=RCOM_0654210 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.797e-10
Identity = 61/185 (32.97%), Postives = 83/185 (44.86%), Query Frame = -3 
Query:   20 MKCLCEKDSGLCSAHSTSHHVFGCPSWGTSSESEVQQTSMSKTLSLKVDAIPQKCLKSKALSFQFQEHDXXXXXXXXXSYPEVGSPQSGQIPFQHSSSTSSTFKITEGNDMGCLIETSIGSPNLTIHPPPMDHSQSLVSRYISMF*WMEHICRHFSQNFGFQXXXXXXXADPCYSGLLAASYGPQ 574
            M  LC+K+SG+CS  STS ++ G    G S+ES V Q+S+S++L L +    Q+   SK L+FQFQ+ D         SYPEV S   G   F  S          E  + G +   S+      I P   D SQS+             +  HF+              +P + GLLAA YGPQ
Sbjct:    5 MHNLCKKESGMCSLLSTSPYIVGRQLLGNSTESTVHQSSLSESLGLTMGVPHQQFHGSKKLTFQFQDQDSSSTQSTGQSYPEVASMGEG---FNESH---------EKAEGGHVKLVSLMGTQDFIFPSQFDCSQSVA-----------RVPLHFT--------------EPYFGGLLAA-YGPQ 151
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig456 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 1
Match NameE-valueIdentityDescription
B9S5T3_RICCO4.797e-1032.97Nuclear transcription factor Y subunit A-3, putati... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 70..79
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig456 ID=Cicer_arietinum_v1_Contig456; Name=Cicer_arietinum_v1_Contig456; organism=Cicer arietinum; type=contig; length=585bp
AGGTACAAATTACCTTATACTGTGGACCATATGAAGCAGCCAGTAGGCCA
CTGTAGCATGGATCAGCAAAGTGGAATGCAAAATGCGCCTGAAACCCAAA
ATTTTGAGAAAAATGTCTGCATATATGCTCCATCCACTAGAACATAGAGA
TATATCTGCTTACAAGTGATTGGCTGTGATCCATTGGTGGAGGATGGATG
GTGAGATTTGGACTCCCAATAGACGTCTCGATGAGACATCCCATGTCATT
CCCCTCGGTTATCTTAAACGTTGAACTGGTTGAAGAACTATGCTGGAAAG
GAATTTGACCTGATTGTGGTGAGCCAACTTCAGGATAAGATTGACCAGAC
GACTGAGTTGAAGAAGAATCGTGTTCTTGGAATTGAAAACTCAGTGCCTT
ACTCTTGAGGCATTTTTGTGGAATAGCATCAACTTTCAAGCTCAAAGTTT
TGGACATAGATGTTTGTTGGACTTCAGATTCAGAAGAAGTTCCCCATGAT
GGGCATCCAAAAACATGGTGGGATGTTGAATGAGCGGAACATAGACCAGA
GTCTTTCTCACATAAGCACTTCATTTACCTTCCCC
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