Cicer_arietinum_v1_Contig512

Contig Overview


Name	Cicer_arietinum_v1_Contig512
Unique Name	Cicer_arietinum_v1_Contig512
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	503

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
HO067249	EST	HO067249:1..232 +	Cicer arietinum unigene v1	n/a
HO067252	EST	HO067252:3..232 -	Cicer arietinum unigene v1	n/a
HO067402	EST	HO067402:16..503 +	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
HO067249	HO067249	Cicer arietinum	EST
HO067252	HO067252	Cicer arietinum	EST
HO067402	HO067402	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. SwissProt
Match: ACCR4_ARATH (Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.237e-17
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 3

Query:   18 VPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAACLAQP 218
            VP+I+ DE HR+LD ++PPPTP+EIE VA VGYLA +C+    R RP+M  VV+ LE+ALAACL  P
Sbjct:  674 VPYILLDEAHRILDQRIPPPTPYEIEAVAHVGYLAAECLMPCSRKRPSMVEVVSKLESALAACLTAP 740

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. SwissProt
Match: CRI4_MAIZE (Putative receptor protein kinase CRINKLY4 OS=Zea mays GN=CR4 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.804e-9
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALA-----ACLAQPIVP 227
            +V   VP I   +I  +LDP + PP+  ++E +  +  +AC CVR+ G+DRP+M  V  +LE ALA      C+ QPI+P
Sbjct:  720 IVEWAVPLIKAGDIFAILDPVLSPPS--DLEALKKIASVACKCVRMRGKDRPSMDKVTTALEHALALLMGSPCIEQPILP 797

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. SwissProt
Match: ACCR3_ARATH (Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 7.580e-8
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAAC 206
            +V   VP I  DE+  +LDP++  P   E + V  V Y A  CV  EGR+RP M  +V +LE AL  C
Sbjct:  730 LVDYSVPAITADELSTILDPRVGSPELGEGDAVELVAYTAMHCVNAEGRNRPTMTDIVGNLERALDLC 797

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. SwissProt
Match: ACR4_ARATH (Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 9.900e-8
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAACLA-----QPIVP 227
            +V   VP I   +I+ +LDP +  P+  EIE +  +  +AC CVR+ G+DRP+M  V  +LE ALA  +      QPI+P
Sbjct:  727 IVEWAVPLIKAGDINALLDPVLKHPS--EIEALKRIVSVACKCVRMRGKDRPSMDKVTTALERALAQLMGNPSSEQPILP 804

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. TrEMBL
Match: C6ZRU3_SOYBN (Cytokinin-regulated kinase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.005e-24
Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAACLAQPIVPARAAARAGTDKLT 266
            VV   VPFI QDEIHRVLD ++ PPTPFEIE VA+VGYLA DCVRLEGRDRP M  VVN+LE ALAACLA+PI+     +R+ TD ++
Sbjct:  685 VVDFVVPFIFQDEIHRVLDRRVAPPTPFEIEAVAYVGYLAADCVRLEGRDRPTMSQVVNNLERALAACLAKPIL-----SRSTTDSIS 767

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. TrEMBL
Match: B9IQE1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_780575 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.504e-24
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAACLAQPIVPARAAARAGT 254
            VV   VP+IVQDEIHRVLD ++PPPTPFEIE V ++GYLA DCV LEGRDRP+M  VVNSLE ALAACL  P   +R+     T
Sbjct:  682 VVDFVVPYIVQDEIHRVLDARVPPPTPFEIEAVIYIGYLAADCVTLEGRDRPSMAGVVNSLEKALAACLVHPTSLSRSTTGGST 765

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. TrEMBL
Match: D7U974_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_41.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00026007001 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.451e-23
Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAACLAQPI-VPARAAARAGTDKLT 266
            VV   VP+IVQDEIHRVLDP +PPPTP+EIE V ++GY+A DCV LEGRDRP+M  +V+SLE ALAAC   P  +P+   +R+ T  LT
Sbjct:  600 VVDLVVPYIVQDEIHRVLDPNVPPPTPYEIEAVTYIGYIAADCVTLEGRDRPSMTDIVHSLERALAACFTPPSPIPSPPISRSTTGSLT 688

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. TrEMBL
Match: B9S707_RICCO (Kinase, putative OS=Ricinus communis GN=RCOM_1330370 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.894e-23
Identity = 53/78 (67.95%), Postives = 63/78 (80.77%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAACLAQPIVPARA 236
            VV   VP+IVQDEIHRVLD ++PPPTP+EIE VA++GYLA DCV LEGRDRP+M  +VNSLE ALAACL  P   +R+
Sbjct:  552 VVDFVVPYIVQDEIHRVLDSRVPPPTPYEIEAVAYIGYLAADCVILEGRDRPSMSEIVNSLERALAACLMHPTSLSRS 629

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. TrEMBL
Match: Q9FUK3_TOBAC (Cytokinin-regulated kinase 1 OS=Nicotiana tabacum GN=CRK1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.474e-23
Identity = 57/85 (67.06%), Postives = 64/85 (75.29%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAACLAQPIVPARAAARAGTD 257
            VV   VP+IVQDEIHRVLD ++PPPTPFEIE VA+VGYLA DC  LEGRDRP M  VVN+LE AL ACLA PI      +R+ TD
Sbjct:  711 VVDFVVPYIVQDEIHRVLDRRVPPPTPFEIESVAYVGYLAADCTTLEGRDRPTMTQVVNTLERALKACLATPIF-----SRSNTD 790

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. TrEMBL
Match: Q2R8P3_ORYSJ (Os11g0222000 protein OS=Oryza sativa subsp. japonica GN=Os11g0222000 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.520e-17
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAACLAQPI--------VPARAAARAGTDK 260
            VV   VP I+ DE+ RVLDP++PPPTP E + +A+VGYLA DCV   G DRP+M  VV++LE ALAAC A  +           RA +R+GTD+
Sbjct:  711 VVEFAVPHILADEVARVLDPRIPPPTPHEADALAYVGYLAADCVGPVGCDRPSMTEVVDALERALAACAAASLSRSGTVTGAGRRALSRSGTDQ 804

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. TrEMBL
Match: A2ZCR2_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_35574 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.520e-17
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAACLAQPI--------VPARAAARAGTDK 260
            VV   VP I+ DE+ RVLDP++PPPTP E + +A+VGYLA DCV   G DRP+M  VV++LE ALAAC A  +           RA +R+GTD+
Sbjct:  711 VVEFAVPHILADEVARVLDPRIPPPTPHEADALAYVGYLAADCVGPVGCDRPSMTEVVDALERALAACAAASLSRSGTVTGAGRRALSRSGTDQ 804

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. TrEMBL
Match: Q01K77_ORYSA (H0525C06.7 protein OS=Oryza sativa GN=H0525C06.7 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.903e-17
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAAC 206
            VV   VP I  D++HRVLD ++P PTP+E+E VA+VGYLA DCVRL GRDRP M  VV  LE A+AAC
Sbjct:  706 VVDMAVPHIEGDQVHRVLDARLPLPTPWEMEAVAYVGYLAADCVRLAGRDRPTMSEVVGVLERAVAAC 773

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. TrEMBL
Match: A2XTS1_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_16004 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.903e-17
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAAC 206
            VV   VP I  D++HRVLD ++P PTP+E+E VA+VGYLA DCVRL GRDRP M  VV  LE A+AAC
Sbjct:  469 VVDMAVPHIEGDQVHRVLDARLPLPTPWEMEAVAYVGYLAADCVRLAGRDRPTMSEVVGVLERAVAAC 536

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. TrEMBL
Match: D7MUT8_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_331197 PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.709e-17
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAACLAQP 218
            VV   VP+I+ D++HRVLD ++PPPTP+EIE VA VGYLA +C+    R RP+M  VV+ LE+ALAACL  P
Sbjct:  671 VVEYVVPYILLDDVHRVLDQRIPPPTPYEIEAVAHVGYLAAECLMPCSRKRPSMAEVVSKLESALAACLTAP 742

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. TAIR peptide
Match: AT5G47850.1 (| Symbols: CCR4 | CRINKLY4 related 4 | chr5:19378803-19381058 REVERSE LENGTH=751)

HSP 1 Score: 87.0409 bits (214), Expect = 5.780e-18
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 3

Query:   18 VPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAACLAQP 218
            VP+I+ DE HR+LD ++PPPTP+EIE VA VGYLA +C+    R RP+M  VV+ LE+ALAACL  P
Sbjct:  674 VPYILLDEAHRILDQRIPPPTPYEIEAVAHVGYLAAECLMPCSRKRPSMVEVVSKLESALAACLTAP 740

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. TAIR peptide
Match: AT3G55950.1 (| Symbols: CCR3, ATCRR3 | CRINKLY4 related 3 | chr3:20753903-20756347 REVERSE LENGTH=814)

HSP 1 Score: 56.6102 bits (135), Expect = 8.366e-9
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAAC 206
            +V   VP I  DE+  +LDP++  P   E + V  V Y A  CV  EGR+RP M  +V +LE AL  C
Sbjct:  730 LVDYSVPAITADELSTILDPRVGSPELGEGDAVELVAYTAMHCVNAEGRNRPTMTDIVGNLERALDLC 797

[Close]

BLAST of Cicer_arietinum_v1_Contig512 vs. TAIR peptide
Match: AT3G59420.1 (| Symbols: ACR4, CR4 | crinkly4 | chr3:21959871-21962558 REVERSE LENGTH=895)

HSP 1 Score: 56.225 bits (134), Expect = 1.093e-8
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 3

Query:    3 VVAAEVPFIVQDEIHRVLDPKMPPPTPFEIEGVAFVGYLACDCVRLEGRDRPNMGHVVNSLETALAACLA-----QPIVP 227
            +V   VP I   +I+ +LDP +  P+  EIE +  +  +AC CVR+ G+DRP+M  V  +LE ALA  +      QPI+P
Sbjct:  727 IVEWAVPLIKAGDINALLDPVLKHPS--EIEALKRIVSVACKCVRMRGKDRPSMDKVTTALERALAQLMGNPSSEQPILP 804

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig512 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig512 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig512 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig512 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 4


Match Name	E-value	Identity	Description
ACCR4_ARATH	5.237e-17	59.70	Serine/threonine-protein kinase-like protein CCR4 ...	[more]
CRI4_MAIZE	1.804e-9	40.00	Putative receptor protein kinase CRINKLY4 OS=Zea m...	[more]
ACCR3_ARATH	7.580e-8	42.65	Putative serine/threonine-protein kinase-like prot...	[more]
ACR4_ARATH	9.900e-8	40.00	Serine/threonine-protein kinase-like protein ACR4 ...	[more]

BLAST of Cicer_arietinum_v1_Contig512 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6ZRU3_SOYBN	1.005e-24	67.05	Cytokinin-regulated kinase OS=Glycine max PE=2 SV=...	[more]
B9IQE1_POPTR	8.504e-24	65.48	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7U974_VITVI	1.451e-23	60.67	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9S707_RICCO	1.894e-23	67.95	Kinase, putative OS=Ricinus communis GN=RCOM_13303...	[more]
Q9FUK3_TOBAC	2.474e-23	67.06	Cytokinin-regulated kinase 1 OS=Nicotiana tabacum ...	[more]
Q2R8P3_ORYSJ	4.520e-17	51.06	Os11g0222000 protein OS=Oryza sativa subsp. japoni...	[more]
A2ZCR2_ORYSI	4.520e-17	51.06	Putative uncharacterized protein OS=Oryza sativa s...	[more]
Q01K77_ORYSA	5.903e-17	63.24	H0525C06.7 protein OS=Oryza sativa GN=H0525C06.7 P...	[more]
A2XTS1_ORYSI	5.903e-17	63.24	Putative uncharacterized protein OS=Oryza sativa s...	[more]
D7MUT8_ARALY	7.709e-17	58.33	Putative uncharacterized protein OS=Arabidopsis ly...	[more]

BLAST of Cicer_arietinum_v1_Contig512 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G47850.1	5.780e-18	59.70	\| Symbols: CCR4 \| CRINKLY4 related 4 \| chr5:193788...	[more]
AT3G55950.1	8.366e-9	42.65	\| Symbols: CCR3, ATCRR3 \| CRINKLY4 related 3 \| chr...	[more]
AT3G59420.1	1.093e-8	40.00	\| Symbols: ACR4, CR4 \| crinkly4 \| chr3:21959871-21...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23258	SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE	coord: 6..66 score: 4
None	No IPR available	PANTHER	PTHR23258:SF418	PTO-LIKE KINASE	coord: 6..66 score: 4

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig512 ID=Cicer_arietinum_v1_Contig512; Name=Cicer_arietinum_v1_Contig512; organism=Cicer arietinum; type=contig; length=503bp
GCGTGGTCGCGGCCGAGGTACCATTTATTGTTCAAGATGAAATTCATAGA
GTTTTAGATCCAAAAATGCCACCACCAACACCATTTGAAATTGAAGGTGT
GGCTTTTGTAGGTTATTTGGCTTGTGATTGTGTTCGTTTAGAGGGTAGAG
ATAGACCAAATATGGGTCATGTTGTGAATAGTTTGGAAACAGCTCTTGCG
GCGTGTTTGGCACAACCAATTGTACCTGCCCGAGCGGCCGCCCGGGCAGG
TACAGATAAACTAACAGGCCCACAAAAATGAAGAAGTTTTAGGCAGCAAT
CCTAATTTTTTAAAATACATCACGAGTAAGGCAGAAGAATATTTTGGAAG
GACAAACATGAGTATAAATTCTCAGAAGTCAGAAGCCATGACCTTAATGG
ATGTTGCATACTATAAACGGCATCATGTGACAAAGACTGCTGGTATGTAG
ACGAAGTGATATCATGCAACTGTTAACCACACAATTGATGTAATTCTCAA
TCA

Search form

Cicer_arietinum_v1_Contig512