Cicer_arietinum_v1_Contig546

Contig Overview
NameCicer_arietinum_v1_Contig546
Unique NameCicer_arietinum_v1_Contig546
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length431
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
HO664116ESTHO664116:144..406 +Cicer arietinum unigene v1n/a
HO664126ESTHO664126:1..431 +Cicer arietinum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
HO664116HO664116Cicer arietinumEST
HO664126HO664126Cicer arietinumEST


Homology
BLAST of Cicer_arietinum_v1_Contig546 vs. TrEMBL
Match: D7UBX2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_74.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00034740001 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.861e-46
Identity = 84/131 (64.12%), Postives = 104/131 (79.39%), Query Frame = 1
Query:   22 YCIVCGRSSSKEFTDTQRLVTHAFMSHKAGLRAKHLGLHKAMCVLMGWDTSVPHDTVTWIPQVLPHAEALVQKEDXXXXXXXXXXHNISMSDDNPQNWKVVSMETIEAFIRGKGFVRGRIKLCLGKPADQS 414
            +CIVCGRS+SKEF DTQRLVTHA+MSHK GLRA HLGLHKA+CVL+GW++ VP DT+TW+P VLP  EAL QKED          HNIS+S+ +P+ WK+V++E + AF+RGKGF  G+ K+CLGKPAD S
Sbjct:   33 FCIVCGRSNSKEFMDTQRLVTHAYMSHKFGLRADHLGLHKAICVLLGWNSIVPPDTITWVPHVLPGDEALTQKEDLILWPPLVIIHNISISNSDPEEWKLVTIEALGAFLRGKGFGGGKFKMCLGKPADHS 163          
BLAST of Cicer_arietinum_v1_Contig546 vs. TrEMBL
Match: B9T197_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0760530 PE=4 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.751e-45
Identity = 87/131 (66.41%), Postives = 102/131 (77.86%), Query Frame = 1
Query:   22 YCIVCGRSSSKEFTDTQRLVTHAFMSHKAGLRAKHLGLHKAMCVLMGWDTSVPHDTVTWIPQVLPHAEALVQKEDXXXXXXXXXXHNISMSDDNPQNWKVVSMETIEAFIRGKGFVRGRIKLCLGKPADQS 414
            +CIVC RS+SK+F DTQRLVTHAFMSHK GLRA+HLGLHKA+CVLMGW+T VP DT TW+P VL   EA  QKED          HNISMS++NP+   VV +E +E F+RGKGFV G+IK+CLGKPADQS
Sbjct:  732 FCIVCRRSASKDFLDTQRLVTHAFMSHKVGLRARHLGLHKAICVLMGWNTYVPCDTTTWVPDVLSDEEAWAQKEDLMLWPPLVIIHNISMSNNNPEQQTVVPIEGVEGFLRGKGFVGGKIKVCLGKPADQS 862          
BLAST of Cicer_arietinum_v1_Contig546 vs. TrEMBL
Match: B9HVZ8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_660193 PE=4 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.461e-32
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   43 SSSKEFTDTQRLVTHAFMSHKAGLRAKHLGLHKAMCVLMGWDTSVPHDTVTWIPQVLPHAEALVQKEDXXXXXXXXXXHNISMSDDNPQNWKVVSMETIEAFIRGKGFVRG 375
            SSSKEF   Q LV HAFMSHK GLRA+HLGLHKA+CVLMGW++SVP D +T  P++LP  EA  QKED          HNISMS++NP+  KV+ +E +EAF+RGKG V G
Sbjct:   31 SSSKEFMAAQNLVQHAFMSHKIGLRAQHLGLHKAICVLMGWNSSVPCDAITCAPEILPDEEAFAQKEDLMLWPPLVVIHNISMSNNNPEQQKVIPIEGVEAFLRGKGIVGG 141          
BLAST of Cicer_arietinum_v1_Contig546 vs. TrEMBL
Match: B9HL24_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_655809 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.334e-28
Identity = 59/97 (60.82%), Postives = 75/97 (77.32%), Query Frame = 1
Query:   70 QRLVTHAFMSHKAGLRAKHLGLHKAMCVLMGWDTSVPHDTVTWIPQVLPHAEALVQKEDXXXXXXXXXXHNISMSDDNPQNWKVVSMETIEAFIRGK 360
            Q LV HAFMSHK GLRA+HLGLHKA+CVLMGW++SVP D +T +P++LP  EA+ QKED          HNISMS++NP++ KVV +E +EAF+RGK
Sbjct:    4 QNLVQHAFMSHKIGLRAQHLGLHKAICVLMGWNSSVPCDAITCVPEILPAEEAVAQKEDLMLWPPLVVIHNISMSNNNPEHQKVVPIEGVEAFLRGK 100          
BLAST of Cicer_arietinum_v1_Contig546 vs. TrEMBL
Match: D7SN41_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_61.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00031382001 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.443e-23
Identity = 57/130 (43.85%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   25 CIVCGRSSSKEFTDTQRLVTHAFMSHKAGLRAKHLGLHKAMCVLMGWDTSVPHDTVTWIPQVLPHAEALVQKEDXXXXXXXXXXHNISMSDDNPQNWKVVSMETIEAFIRGKGFVRGRIKLCLGKPADQS 414
            C +CG S+SKEF +T  LV H  MS K GLR +HLGL KA+C+LMGW++ V  +   W+ QVLP AE+L  KED          HN S+ + +P    +V+++ +   +R  GF  G+ ++C GKPA+QS
Sbjct:  747 CSICG-SNSKEFMNTIGLVMHTIMSPKGGLRVQHLGLFKALCLLMGWNSDVTPNK-PWVHQVLPAAESLALKEDLIIWPPVVIVHNSSIGNSDPDERMIVTIDMLVTILRDMGFDGGKTQICRGKPANQS 874          
BLAST of Cicer_arietinum_v1_Contig546 vs. TrEMBL
Match: Q6JJ25_IPOTF (Putative uncharacterized protein OS=Ipomoea trifida PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.916e-22
Identity = 56/130 (43.08%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   25 CIVCGRSSSKEFTDTQRLVTHAFMSHKAGLRAKHLGLHKAMCVLMGWDTSVPHDTVTWIPQVLPHAEALVQKEDXXXXXXXXXXHNISMSDDNPQNWKVVSMETIEAFIRGKGFVRGRIKLCLGKPADQS 414
            CI+CGR S +EF D + LV HA  S KAG+R++H G HKA+C+LMGW ++   ++  W+ +VLP  E L  KED          HNI++++ NP    VVS+E +E  +R  GF     K+C GKP + S
Sbjct:  865 CIICGRDS-EEFGDVESLVMHALTSSKAGVRSQHFGFHKALCLLMGWKSAEAPNS-AWVHKVLPEDETLALKEDLIIWPPVVVIHNITITNTNPDERVVVSVEELETKLRDMGFGG---KVCRGKPGNLS 989          
BLAST of Cicer_arietinum_v1_Contig546 vs. TrEMBL
Match: A0PAD3_IPOTF (Putative uncharacterized protein OS=Ipomoea trifida PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.916e-22
Identity = 56/130 (43.08%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   25 CIVCGRSSSKEFTDTQRLVTHAFMSHKAGLRAKHLGLHKAMCVLMGWDTSVPHDTVTWIPQVLPHAEALVQKEDXXXXXXXXXXHNISMSDDNPQNWKVVSMETIEAFIRGKGFVRGRIKLCLGKPADQS 414
            CI+CGR S +EF D + LV HA  S KAG+R++H G HKA+C+LMGW ++   ++  W+ +VLP  E L  KED          HNI++++ NP    VVS+E +E  +R  GF     K+C GKP + S
Sbjct:  887 CIICGRDS-EEFGDVESLVMHALTSSKAGVRSQHFGFHKALCLLMGWKSAEAPNS-AWVHKVLPEDETLALKEDLIIWPPVVVIHNITITNTNPDERVVVSVEELETKLRDMGFGG---KVCRGKPGNLS 1011          
BLAST of Cicer_arietinum_v1_Contig546 vs. TrEMBL
Match: B9SSW2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0792940 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.673e-20
Identity = 55/122 (45.08%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   52 KEFTDTQRLVTHAFMSHKAGLRAKHLGLHKAMCVLMGWDTSVPHDTVTWIPQVLPHAEALVQKEDXXXXXXXXXXHNISMSDDNPQNWKVVSMETIEAFIRGKGFVRGRIKLCLGKPADQST 417
            KEF DT  L  HAF S K G R+ HLG  KA+CVLMGWD+ +  ++  WI Q+LP AEA  QKED           N S++++N     +VS+E ++  +RG G  RG   LC GK A++ST
Sbjct:   23 KEFVDTISLAQHAFTSCKVGSRSGHLGFGKALCVLMGWDSKIVPNS-RWIWQILPAAEASSQKEDLILWPPVVLIQNSSIANENLDERMLVSIEGLKDILRGMGCDRGMTNLCHGKAANRST 143          
BLAST of Cicer_arietinum_v1_Contig546 vs. TrEMBL
Match: B9HQU8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_649106 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.397e-18
Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   94 MSHKAGLRAKHLGLHKAMCVLMGWDTSVPHDTVTWIPQVLPHAEALVQKEDXXXXXXXXXXHNISMSDDNPQNWKVVSMETIEAFIRGKGFVRGRIKLCLGKPADQST 417
            MS K   RA+HLGLHKA+CVLMGW+ S       W+ Q+LP  EA   KED          HN S+++DNP    +VS+E +   +RG GF +G   +C GK A+QST
Sbjct:    1 MSSKGSFRAEHLGLHKALCVLMGWN-SAGFPNSQWVRQILPEVEASSLKEDLIIWPPVVVIHNRSIANDNPDERIIVSVEGLRHILRGMGFGQGITNICRGKAANQST 107          
BLAST of Cicer_arietinum_v1_Contig546 vs. TrEMBL
Match: B9RTR8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0912140 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.207e-15
Identity = 50/133 (37.59%), Postives = 69/133 (51.88%), Query Frame = 1
Query:    4 SGRPGRY-CIVCGRSSSKEFTDTQRLVTHAFMSHKAGLRAKHLGLHKAMCVLMGWDTSVPHDTVTWIPQVLPHAEALVQKEDXXXXXXXXXXHNISMSDDNPQNWKVVSMETIEAFIRGKGFVRGRIKLCLGK 399
            +G+ GR  C+VCGRSS K+F DT  LV H + S  A LR  HLGLHKA+C+LMGW+ S P D    + Q+LP   A   ++D          HN           + +  + ++  IR  GF  G+ K   G+
Sbjct:  273 NGKQGRLMCLVCGRSS-KDFPDTHALVMHTYNSDNADLRVDHLGLHKALCILMGWNYSKPPDNAK-VYQLLPADVAATNQDDLVMWPPMVIIHNTVTGKGKDGRIEGLGNKAMDNKIRDLGFSGGKSKSLYGR 403          
BLAST of Cicer_arietinum_v1_Contig546 vs. TAIR peptide
Match: AT3G22430.1 (| Symbols: | CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). | chr3:7953455-7957605 FORWARD LENGTH=510)

HSP 1 Score: 73.1738 bits (178), Expect = 6.245e-14
Identity = 48/133 (36.09%), Postives = 64/133 (48.12%), Query Frame = 1
Query:    4 SGRPGRY-CIVCGRSSSKEFTDTQRLVTHAFMSHKAGLRAKHLGLHKAMCVLMGWDTSVPHDTVTWIPQVLPHAEALVQKEDXXXXXXXXXXHNISMSDDNPQNWKVVSMETIEAFIRGKGFVRGRIKLCLGK 399
            +GR GR  C+VCGRSS K+  DT  LV H + S  +  R  HLGLHKA+CVLMGW+ S   D  +   Q LP  EA + +             N S         +    +T++  IR  G   G+ K   G+
Sbjct:  277 NGRKGRLQCLVCGRSS-KDVQDTHSLVMHTYCSDDSSSRVHHLGLHKALCVLMGWNFSKAPDN-SKAYQNLPADEAAINQAQLIIWPPHVIVQNTSTGKGKEGRMEGFGNKTMDNRIRELGLTGGKSKSLYGR 407          
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig546 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7UBX2_VITVI7.861e-4664.12Whole genome shotgun sequence of line PN40024, sca... [more]
B9T197_RICCO1.751e-4566.41Putative uncharacterized protein OS=Ricinus commun... [more]
B9HVZ8_POPTR6.461e-3260.36Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9HL24_POPTR4.334e-2860.82Predicted protein (Fragment) OS=Populus trichocarp... [more]
D7SN41_VITVI1.443e-2343.85Whole genome shotgun sequence of line PN40024, sca... [more]
Q6JJ25_IPOTF7.916e-2243.08Putative uncharacterized protein OS=Ipomoea trifid... [more]
A0PAD3_IPOTF7.916e-2243.08Putative uncharacterized protein OS=Ipomoea trifid... [more]
B9SSW2_RICCO5.673e-2045.08Putative uncharacterized protein OS=Ricinus commun... [more]
B9HQU8_POPTR1.397e-1845.37Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9RTR8_RICCO4.207e-1537.59Putative uncharacterized protein OS=Ricinus commun... [more]
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BLAST of Cicer_arietinum_v1_Contig546 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G22430.16.245e-1436.09| Symbols: | CONTAINS InterPro DOMAIN/s: Domain o... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 83..92
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig546 ID=Cicer_arietinum_v1_Contig546; Name=Cicer_arietinum_v1_Contig546; organism=Cicer arietinum; type=contig; length=431bp
TCGAGCGGCCGCCCGGGCAGGTACTGCATTGTATGTGGTAGAAGTTCCTC
AAAGGAATTCACGGACACTCAACGCTTAGTAACTCATGCTTTTATGTCCC
ATAAGGCTGGGCTGAGAGCTAAACACTTGGGTCTTCATAAAGCAATGTGT
GTTCTGATGGGATGGGATACTTCTGTTCCTCACGATACAGTAACTTGGAT
TCCCCAGGTCTTGCCCCATGCTGAAGCTTTAGTTCAAAAGGAGGATTTGA
TTCTTTGGCCGCCAATTATTATCATCCATAATATTTCAATGTCCGATGAC
AATCCTCAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGCATTCAT
AAGAGGTAAAGGTTTTGTGAGGGGAAGAATCAAATTATGCTTAGGGAAAC
CTGCAGATCAAAGTACCTCGGCCGCGACCAC
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