Cicer_arietinum_v1_Contig560

Contig Overview


Name	Cicer_arietinum_v1_Contig560
Unique Name	Cicer_arietinum_v1_Contig560
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	546

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
HO214289	EST	HO214289:1..255 +
CK148949	EST	CK148949:34..546 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
HO214289	HO214289	Cicer arietinum	EST
CK148949	CK148949	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. SwissProt
Match: RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.862e-70
Identity = 107/141 (75.89%), Postives = 122/141 (86.52%), Query Frame = -3

Query:   41 LYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYL 463
            L FP++   PHPNECSGGDLDGDL+FI+WD  LIP + D PMDYT  RPRIMDH VTLEEI + FVDYMIND+LGAISTAHL+HADR P KARS +CL+LA LHSMAVDFAKTGAPAEMPR L+PRE+PDFMER++KPMY+
Sbjct:  806 LVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYI 946

HSP 2 Score: 54.6842 bits (130), Expect = 1.862e-70
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGDIRVL+AIY+ +L   G+ DCLVFPQ+G R
Sbjct:  781 PCLHPGDIRVLEAIYDPDL--VGMVDCLVFPQRGER 814

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. SwissProt
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.879e-48
Identity = 75/138 (54.35%), Postives = 101/138 (73.19%), Query Frame = -3

Query:   44 FPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMY 457
            FP++   PHPNECSG DLDGD++F+SWD  LIPP+   PMDYT      +DH VT+EE+ ++F +Y++N++LG I+ AH+V AD+E  KA S  C+ELA+L S+AVDF KTG PA +P  L  +E+PDFME+ DK  Y
Sbjct:  413 FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLDKVTY 550

HSP 2 Score: 43.8986 bits (102), Expect = 1.879e-48
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGDIR+L A+    L    + +C+VFPQ+GPR
Sbjct:  386 PCLHPGDIRILHAVDVPVLHH--MFNCVVFPQQGPR 419

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. SwissProt
Match: SHL2_ORYSJ (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.026e-40
Identity = 69/142 (48.59%), Postives = 91/142 (64.08%), Query Frame = -3

Query:   44 LYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPP--QTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMY 463
            L FP+K   PH NE SG DLDGDL+F++WD+ LIPP  ++ NPMDY+    + +  +V+  +I  FF+  MI++ LG I  AH+VHAD     A   KC+ LAEL + AVDF KTG  A MP  LKP+ +PDFM + D   Y
Sbjct:  869 LVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSY 1010

HSP 2 Score: 49.6766 bits (117), Expect = 6.026e-40
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGD+R+L+A+   EL    L DCLVFPQKG R
Sbjct:  844 PCLHPGDVRILEAVDVPELHH--LVDCLVFPQKGER 877

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. SwissProt
Match: RDR1_SCHPO (RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe GN=rdr1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.889e-20
Identity = 54/140 (38.57%), Postives = 76/140 (54.29%), Query Frame = -3

Query:   62 LYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDH---KVTLEEIHQFFVDYMINDTLGAISTAHLVHA---DREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMER 463
            + FP       P  CSGGDLDGD + + WD+ L+P   + P        + +D    K  ++ + +FFV+Y+  D+LG IS A    A   D  PE      CLELAE+HS AVDFAK+G   +M     P+ +PDFM++
Sbjct:  881 IVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPKIVNYPPLLESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHDHDNNPEGIFGNVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQK 1020

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TrEMBL
Match: D7SHV2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00007792001 PE=4 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.924e-78
Identity = 117/141 (82.98%), Postives = 125/141 (88.65%), Query Frame = -3

Query:   41 LYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYL 463
            + FP+K   PHPNECSGGDLDGD FFI WD+ LIP QT+ PMDYT RRPRIMDH VTLEEI +FFVDYMINDTLG ISTAHLVHADREPEKARS+KCLELA LHSMAVDFAKTGAPAEMPR LKP+EFPDFMER DKPMY+
Sbjct:  804 ILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIPSQTEAPMDYTSRRPRIMDHDVTLEEIQKFFVDYMINDTLGVISTAHLVHADREPEKARSKKCLELATLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVDKPMYI 944

HSP 2 Score: 67.781 bits (164), Expect = 1.924e-78
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGDIRVLDA+Y  ELEEKGL DC++FPQKG R
Sbjct:  777 PCLHPGDIRVLDAVYEVELEEKGLVDCILFPQKGER 812

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TrEMBL
Match: B9RB56_RICCO (RNA-dependent RNA polymerase, putative OS=Ricinus communis GN=RCOM_1511600 PE=4 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.103e-77
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = -3

Query:   41 LYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYL 463
            + FP+K   PHPNECSGGDLDGD FFISWDK LIP +T++PMDY GRRPR MDH VTLEEI +FF+DYMINDTLGAISTAHLVHADREP+KARS KCL+LAELHSMAVDFAKTGAPAEMP+ALKP+EFPDFMER DK MY+
Sbjct:  654 ILFPQKGERPHPNECSGGDLDGDQFFISWDKGLIPGETESPMDYQGRRPRKMDHDVTLEEIQKFFIDYMINDTLGAISTAHLVHADREPDKARSSKCLQLAELHSMAVDFAKTGAPAEMPKALKPKEFPDFMERIDKKMYI 794

HSP 2 Score: 66.2402 bits (160), Expect = 2.103e-77
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGDIRVL+A+Y  ELEEKGL DC++FPQKG R
Sbjct:  627 PCLHPGDIRVLEAVYEVELEEKGLVDCILFPQKGER 662

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TrEMBL
Match: D7LYX0_ARALY (RNA-dependent RNA polymerase 2 OS=Arabidopsis lyrata subsp. lyrata GN=RDR2 PE=4 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.130e-75
Identity = 113/141 (80.14%), Postives = 124/141 (87.94%), Query Frame = -3

Query:   41 LYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYL 463
            + FP+K   PHPNECSGGDLDGD FF+SWD+ LIP Q D PMDY G RPRIMDH VTLEEIH+FFVDYMI+DTLG ISTAHLVHADR+PEKARS+KCLELA LHS AVDFAKTGAPAEMP ALKPREFPDF+ERF+KP Y+
Sbjct:  813 IIFPQKGERPHPNECSGGDLDGDQFFVSWDEKLIPSQMDPPMDYAGSRPRIMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYI 953

HSP 2 Score: 64.3142 bits (155), Expect = 1.130e-75
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGDIRVLDAIY    EEKG  DC++FPQKG R
Sbjct:  786 PCLHPGDIRVLDAIYEVNFEEKGFLDCIIFPQKGER 821

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TrEMBL
Match: O82504_ARATH (F2P3.11 protein OS=Arabidopsis thaliana GN=AT4g11130 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 9.459e-75
Identity = 110/141 (78.01%), Postives = 124/141 (87.94%), Query Frame = -3

Query:   41 LYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYL 463
            + FP+K   PHPNECSGGDLDGD FF+SWD+ +IP + D PMDY G RPR+MDH VTLEEIH+FFVDYMI+DTLG ISTAHLVHADR+PEKARS+KCLELA LHS AVDFAKTGAPAEMP ALKPREFPDF+ERF+KP Y+
Sbjct:  812 IIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYI 952

HSP 2 Score: 63.929 bits (154), Expect = 9.459e-75
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGDIRVLDAIY    EEKG  DC++FPQKG R
Sbjct:  785 PCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGER 820

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TrEMBL
Match: Q647I4_NICBE (Putative RNA-dependent RNA polymerase RdRP2 OS=Nicotiana benthamiana PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 5.083e-73
Identity = 112/141 (79.43%), Postives = 127/141 (90.07%), Query Frame = -3

Query:   41 LYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYL 463
            + FP+K   PHPNECSGGDLDGDL+FISWD++LIP QT  PMDYTGRR RIMDH+VTL+EI +FFVDYMI+DTLGAISTAHLVHADREP+KA + KCL+LA LHSMAVDFAKTGA AEMPR LKPREFPDF+ER+DKPMY+
Sbjct:  807 IIFPQKGERPHPNECSGGDLDGDLYFISWDENLIPRQTVTPMDYTGRRTRIMDHEVTLQEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNPKCLQLATLHSMAVDFAKTGAAAEMPRFLKPREFPDFLERWDKPMYI 947

HSP 2 Score: 59.6918 bits (143), Expect = 5.083e-73
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGD+RVL+A+Y   LEEK   DC++FPQKG R
Sbjct:  780 PCLHPGDVRVLEAVYEVALEEKAWVDCIIFPQKGER 815

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TrEMBL
Match: B9IEP4_POPTR (Rna-dependent RNA polymerase OS=Populus trichocarpa GN=RDR904 PE=4 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.093e-71
Identity = 109/141 (77.30%), Postives = 119/141 (84.40%), Query Frame = -3

Query:   41 LYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYL 463
            + FP+    PHPNECSGGDLDGD FFISWD+ L+P  T+ PMDY G R RIMDH VTLEEI +FFVDYMINDTLGAISTAHLVHAD EP+KARS KCL+LA LHSMAVDFAKTGAPAEMP  LKPREFPDFMER +K MY+
Sbjct:  799 IIFPQNGGRPHPNECSGGDLDGDQFFISWDEGLLPCHTEAPMDYVGGRQRIMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKARSEKCLQLATLHSMAVDFAKTGAPAEMPLYLKPREFPDFMERAEKQMYI 939

HSP 2 Score: 65.0846 bits (157), Expect = 2.093e-71
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGDIRVL+A+Y+ ELEEKGL DC++FPQ G R
Sbjct:  772 PCLHPGDIRVLEAVYDVELEEKGLVDCIIFPQNGGR 807

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TrEMBL
Match: Q19VG2_MAIZE (RNA-dependent RNA polymerase OS=Zea mays GN=mop1 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.123e-69
Identity = 106/139 (76.26%), Postives = 121/139 (87.05%), Query Frame = -3

Query:   41 FPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYL 457
            FP++   PHPNECSGGDLDGDLFFI+WD  LIP + D PMDYT  RPRIMDH VTLEEI + FV YMINDTLGAISTAHL+HADR+P KARS +C++LA LHSMAVDFAKTGAPAEMP AL+PREFPDFMER+++PMY+
Sbjct:  808 FPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSPECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYV 946

HSP 2 Score: 58.9214 bits (141), Expect = 1.123e-69
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGD+RVL+A+Y+  L+ +GL DC+VFPQ+G R
Sbjct:  779 PCLHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGER 814

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TrEMBL
Match: C4JBQ0_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.129e-69
Identity = 106/139 (76.26%), Postives = 121/139 (87.05%), Query Frame = -3

Query:   41 FPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYL 457
            FP++   PHPNECSGGDLDGDLFFI+WD  LIP + D PMDYT  RPRIMDH VTLEEI + FV YMINDTLGAISTAHL+HADR+P KARS +C++LA LHSMAVDFAKTGAPAEMP AL+PREFPDFMER+++PMY+
Sbjct:  206 FPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSPECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYV 344

HSP 2 Score: 58.9214 bits (141), Expect = 1.129e-69
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGD+RVL+A+Y+  L+ +GL DC+VFPQ+G R
Sbjct:  177 PCLHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGER 212

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TrEMBL
Match: A2XUF4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_16234 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.492e-69
Identity = 107/141 (75.89%), Postives = 122/141 (86.52%), Query Frame = -3

Query:   41 LYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYL 463
            L FP++   PHPNECSGGDLDGDL+FI+WD  LIP + D PMDYT  RPRIMDH VTLEEI + FVDYMIND+LGAISTAHL+HADR P KARS +CL+LA LHSMAVDFAKTGAPAEMPR L+PRE+PDFMER++KPMY+
Sbjct:  806 LVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYI 946

HSP 2 Score: 54.6842 bits (130), Expect = 2.492e-69
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGDIRVL+AIY+ +L   G+ DCLVFPQ+G R
Sbjct:  781 PCLHPGDIRVLEAIYDPDL--VGMVDCLVFPQRGER 814

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TrEMBL
Match: C5YA80_SORBI (Putative uncharacterized protein Sb06g019330 OS=Sorghum bicolor GN=Sb06g019330 PE=4 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 7.206e-69
Identity = 105/139 (75.54%), Postives = 119/139 (85.61%), Query Frame = -3

Query:   41 FPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYL 457
            FP++   PHPNECSGGDLDGDLFFI+WD  LIP + D PMDYT  RPRIMDH VTLEEI + FV+YMIND LG ISTAHL+HADR P KARS +CL+LA LHSMAVDFAKTGAPAEMP AL+PREFPDFMER+++PMY+
Sbjct:  809 FPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVNYMINDALGVISTAHLIHADRNPLKARSPECLQLAALHSMAVDFAKTGAPAEMPVALRPREFPDFMERWERPMYV 947

HSP 2 Score: 59.3066 bits (142), Expect = 7.206e-69
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGD+RVL+A+Y+  L+ +GL DC+VFPQ+G R
Sbjct:  780 PCLHPGDVRVLEAVYDPALDARGLIDCVVFPQRGER 815

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TAIR peptide
Match: AT4G11130.1 (| Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase 2 | chr4:6780522-6784390 FORWARD LENGTH=1133)

HSP 1 Score: 241.121 bits (614), Expect = 7.653e-77
Identity = 110/141 (78.01%), Postives = 124/141 (87.94%), Query Frame = -3

Query:   41 LYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYL 463
            + FP+K   PHPNECSGGDLDGD FF+SWD+ +IP + D PMDY G RPR+MDH VTLEEIH+FFVDYMI+DTLG ISTAHLVHADR+PEKARS+KCLELA LHS AVDFAKTGAPAEMP ALKPREFPDF+ERF+KP Y+
Sbjct:  812 IIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYI 952

HSP 2 Score: 63.929 bits (154), Expect = 7.653e-77
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGDIRVLDAIY    EEKG  DC++FPQKG R
Sbjct:  785 PCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGER 820

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TAIR peptide
Match: AT1G14790.1 (| Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymerase 1 | chr1:5094317-5097817 REVERSE LENGTH=1107)

HSP 1 Score: 176.407 bits (446), Expect = 1.012e-51
Identity = 77/138 (55.80%), Postives = 104/138 (75.36%), Query Frame = -3

Query:   44 FPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMY 457
            FP+K L PHPNECSG DLDGD++F+ WD++L+PP+T  PMDYT    +I+DH VT+EE+ ++F +Y++ND+LG I+ AH   AD+EP KA S  C+ELA+  S AVDF KTG  A +P+ L  +E+PDFME+ DKP Y
Sbjct:  781 FPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTY 918

HSP 2 Score: 44.669 bits (104), Expect = 1.012e-51
Identity = 21/36 (58.33%), Postives = 25/36 (69.44%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGD+RVL A+    L    + DC+VFPQKG R
Sbjct:  754 PCLHPGDVRVLQAVNVPALNH--MVDCVVFPQKGLR 787

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TAIR peptide
Match: AT3G49500.1 (| Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA polymerase 6 | chr3:18349193-18353205 REVERSE LENGTH=1196)

HSP 1 Score: 124.79 bits (312), Expect = 3.083e-37
Identity = 65/142 (45.77%), Postives = 83/142 (58.45%), Query Frame = -3

Query:   44 LYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLIPPQTDN--PMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMY 463
            L FP+K   PH NE SG DLDGDL+F++WD+ LIPP   +   M Y     + +   V  ++I  FF   + N+ LG I  AH+VHADR    A   +CL LAEL + AVDF KTG    MP  LKP+ +PDFM + D   Y
Sbjct:  845 LIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTY 986

HSP 2 Score: 47.7506 bits (112), Expect = 3.083e-37
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = -2

Query:  438 PCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPR 545
            PCLHPGD+R+L+A+   +L    + DCL+FPQKG R
Sbjct:  820 PCLHPGDVRILEAVDVPQLHH--MYDCLIFPQKGDR 853

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TAIR peptide
Match: AT2G19930.1 (| Symbols: | RNA-dependent RNA polymerase family protein | chr2:8607533-8612441 REVERSE LENGTH=977)

HSP 1 Score: 65.855 bits (159), Expect = 1.616e-11
Identity = 47/164 (28.66%), Postives = 78/164 (47.56%), Query Frame = -3

Query:   53 EIALYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLI-------------PPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVD--YMINDTLGAISTAHLVHADR---------EPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDK 472
            + A++FP+K      +E +GGD DGD++FIS + +L+             PP   N    +GR P  +  +   EE+ + F+   +  ++ +G  + + L   DR         E +    +K LEL +++  A+D  K G    +P  LKP  FP +MER  K
Sbjct:  661 KFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSN----SGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK 820

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TAIR peptide
Match: AT2G19920.1 (| Symbols: | RNA-dependent RNA polymerase family protein | chr2:8602222-8606887 REVERSE LENGTH=927)

HSP 1 Score: 62.3882 bits (150), Expect = 1.787e-10
Identity = 46/154 (29.87%), Postives = 77/154 (50.00%), Query Frame = -3

Query:   62 LYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLI-------PPQTDNPMD--YTGRRPRIMDHKVTLEEIHQFFVD--YMINDTLGAISTAHLVHADR--------EPEKAR-SRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMER 463
            ++FP+K      +E +GGD DGD++FIS +  L+       P  + +P    YTGR+P  +  +   EE+ + F+   +  +  +G  + + L   DR          EKA   +K L+L +++  A+D  KTG    +P  +K   FP +MER
Sbjct:  664 VFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMER 817

[Close]

BLAST of Cicer_arietinum_v1_Contig560 vs. TAIR peptide
Match: AT2G19910.1 (| Symbols: | RNA-dependent RNA polymerase family protein | chr2:8595820-8600757 REVERSE LENGTH=992)

HSP 1 Score: 59.6918 bits (143), Expect = 1.158e-9
Identity = 45/160 (28.12%), Postives = 76/160 (47.50%), Query Frame = -3

Query:   53 EIALYFPKKDLGPHPNECSGGDLDGDLFFISWDKDLIP--------PQTDNPMD-YTGRRPRIMDHKVTLEEIHQFFVD--YMINDTLG-------AISTAHLVHADREPEKARSRK--CLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDK 472
            + A++FP+K      +E +GGD DGD++FIS +  L+           +  P   Y GR+P  +  +   EE+ + F+   +   D +G        I    L   D   ++   RK   L+L +++  A+D  K GA  ++P  L+ + FP +MER  K
Sbjct:  672 KFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPK 831

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig560 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig560 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig560 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig560 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 4


Match Name	E-value	Identity	Description
RDR2_ORYSJ	1.862e-70	75.89	Probable RNA-dependent RNA polymerase 2 OS=Oryza s...	[more]
RDR1_ORYSJ	1.879e-48	54.35	Probable RNA-dependent RNA polymerase 1 OS=Oryza s...	[more]
SHL2_ORYSJ	6.026e-40	48.59	Probable RNA-dependent RNA polymerase SHL2 OS=Oryz...	[more]
RDR1_SCHPO	7.889e-20	38.57	RNA-dependent RNA polymerase 1 OS=Schizosaccharomy...	[more]

BLAST of Cicer_arietinum_v1_Contig560 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7SHV2_VITVI	1.924e-78	82.98	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9RB56_RICCO	2.103e-77	81.56	RNA-dependent RNA polymerase, putative OS=Ricinus ...	[more]
D7LYX0_ARALY	1.130e-75	80.14	RNA-dependent RNA polymerase 2 OS=Arabidopsis lyra...	[more]
O82504_ARATH	9.459e-75	78.01	F2P3.11 protein OS=Arabidopsis thaliana GN=AT4g111...	[more]
Q647I4_NICBE	5.083e-73	79.43	Putative RNA-dependent RNA polymerase RdRP2 OS=Nic...	[more]
B9IEP4_POPTR	2.093e-71	77.30	Rna-dependent RNA polymerase OS=Populus trichocarp...	[more]
Q19VG2_MAIZE	1.123e-69	76.26	RNA-dependent RNA polymerase OS=Zea mays GN=mop1 P...	[more]
C4JBQ0_MAIZE	1.129e-69	76.26	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
A2XUF4_ORYSI	2.492e-69	75.89	Putative uncharacterized protein OS=Oryza sativa s...	[more]
C5YA80_SORBI	7.206e-69	75.54	Putative uncharacterized protein Sb06g019330 OS=So...	[more]

BLAST of Cicer_arietinum_v1_Contig560 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 6


Match Name	E-value	Identity	Description
AT4G11130.1	7.653e-77	78.01	\| Symbols: RDR2, SMD1 \| RNA-dependent RNA polymera...	[more]
AT1G14790.1	1.012e-51	55.80	\| Symbols: RDR1, ATRDRP1 \| RNA-dependent RNA polym...	[more]
AT3G49500.1	3.083e-37	45.77	\| Symbols: RDR6, SGS2, SDE1 \| RNA-dependent RNA po...	[more]
AT2G19930.1	1.616e-11	28.66	\| Symbols: \| RNA-dependent RNA polymerase family ...	[more]
AT2G19920.1	1.787e-10	29.87	\| Symbols: \| RNA-dependent RNA polymerase family ...	[more]
AT2G19910.1	1.158e-9	28.13	\| Symbols: \| RNA-dependent RNA polymerase family ...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 7..15 score
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 6..144 score: 8.3
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 4..117 score: 4.5

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig560 ID=Cicer_arietinum_v1_Contig560; Name=Cicer_arietinum_v1_Contig560; organism=Cicer arietinum; type=contig; length=546bp
CTGCRGTTTAAACGANTTCGCCCTTANCGTGGTCGCGGCCGAGGTACATA
GGCTTGTCGAACCGCTCCATAAAATCTGGAAACTCTCTTGGTTTCAAAGC
TCTAGGCATTTCTGCAGGAGCTCCAGTCTTTGCGAAGTCAACTGCCATGG
AATGAAGCTCAGCCAACTCCAAACATTTTCTACTCCTGGCCTTTTCTGGT
TCTCGGTCAGCGTGAACCAGATGTGCGGTGGAGATAGCGCCCAAAGTATC
GTTGATCATGTAATCAACAAAAAATTGGTGTATTTCCTCTAGTGTCACCT
TATGGTCCATTATACGAGGCCTTCTTCCTGTGTAGTCCATAGGATTATCA
GTTTGAGGTGGGATAAGATCTTTGTCCCAGCTTATGAAAAATAAATCTCC
ATCAAGATCACCTCCAGAGCATTCATTTGGATGAGGCCCTAGGTCCTTTT
TGGGGAAATACAAGGCAATCTCTCAAGCCCTTTTCCTCTAATTCTTCATT
GTAGATAGCATCAAGGACTCTGATGTCTCCTGGGTGAAGACAAGGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR007855	RNA-dep_RNA_pol_euk-typ

Search form

Cicer_arietinum_v1_Contig560