Cicer_arietinum_v1_Contig763

Contig Overview


Name	Cicer_arietinum_v1_Contig763
Unique Name	Cicer_arietinum_v1_Contig763
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	446

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
FE670241	EST	FE670241:25..349 +	Cicer arietinum unigene v1	n/a
GR915922	EST	GR915922:1..446 +	Cicer arietinum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
FE670241	FE670241	Cicer arietinum	EST
GR915922	GR915922	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. SwissProt
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.129e-21
Identity = 56/116 (48.28%), Postives = 72/116 (62.07%), Query Frame = 3

Query:   51 RQARAPGRDSPSSEG---KNSYDSSHGIPGRSRLRPAN-RVDETPDKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERPHVIRRQPANGKAQCCCFAWGKK 386
            RQ RA   +S  ++    KNSYD +    G+SR +P N R DE+P+K   VPKFG+WD +NP+SAD YTHIFNKVREE+  GA  + G+     H   R P N  + CCCF +G K
Sbjct:  102 RQGRASQNNSYDNKSPLHKNSYDGT----GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVS-GSSRTPTHQSSRNP-NNTSSCCCFGFGGK 211

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TrEMBL
Match: B7FHG3_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 4.952e-56
Identity = 108/122 (88.52%), Postives = 112/122 (91.80%), Query Frame = 3

Query:   27 SVDRSPLHRQARAP-GRDSPSSEGKN-SYDSSHGIPGRSRLRPANRVDETPDKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERPHVIRRQPANGKAQCCCFAWGKK 386
            SV+RSPLHRQARAP GRDSPS EGKN SYDSSHG PGRSRLRPANR DETPDKGAAVPKFG+WDVSNPASAD YTHIFNKVREE+QGGAG+APGTPNERPHVIR Q  N KAQCCCFAWGKK
Sbjct:  140 SVERSPLHRQARAPAGRDSPSWEGKNNSYDSSHGTPGRSRLRPANRGDETPDKGAAVPKFGDWDVSNPASADGYTHIFNKVREERQGGAGHAPGTPNERPHVIRNQ-NNDKAQCCCFAWGKK 260

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TrEMBL
Match: C6TNP3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.321e-52
Identity = 96/123 (78.05%), Postives = 103/123 (83.74%), Query Frame = 3

Query:   18 PRXSVDRSPLHRQARAPGRDSPSSEGKNSYDSSHGIPGRSRLRPANRVDETPDKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERPHVIRRQPANGKAQCCCFAWGKK 386
            P  ++DRSPLHRQA+ PGRDSPS EGKNSYDSSHG PGRSRLRP+ R DETPD+GAAVPKFGEWD SNPASAD YTHIFNKVREEKQ GAG+ PGTPN R +  R Q AN KAQ CCF WGKK
Sbjct:  126 PEHNIDRSPLHRQAKTPGRDSPSWEGKNSYDSSHGTPGRSRLRPSYRGDETPDEGAAVPKFGEWDESNPASADGYTHIFNKVREEKQVGAGHVPGTPNGRQYAARNQRANDKAQSCCFCWGKK 248

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TrEMBL
Match: C6TH04_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.380e-50
Identity = 93/120 (77.50%), Postives = 100/120 (83.33%), Query Frame = 3

Query:   27 SVDRSPLHRQARAPGRDSPSSEGKNSYDSSHGIPGRSRLRPANRVDETPDKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERPHVIRRQPANGKAQCCCFAWGKK 386
            S++RSPLHRQARAPGRDSP  E KNSYDSS G PGRSRLRPANR DETPDKGAAVPKFG+WDV+NPASAD +THIFNKVREE+QGG G  PGTPNERP  I     + K QCCCFAWG K
Sbjct:  126 SIERSPLHRQARAPGRDSPQWEPKNSYDSSQGTPGRSRLRPANRGDETPDKGAAVPKFGDWDVNNPASADGFTHIFNKVREERQGGPGQVPGTPNERPQPINGLSNDDKVQCCCFAWGGK 245

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TrEMBL
Match: B7FGR2_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.015e-49
Identity = 93/120 (77.50%), Postives = 100/120 (83.33%), Query Frame = 3

Query:   27 SVDRSPLHRQARAPGRDSPSSEGKNSYDSSHGIPGRSRLRPANRVDETPDKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERPHVIRRQPANGKAQCCCFAWGKK 386
            SV+RSPLHRQA+ PGRDSPS EGK++YDSSHG PGRSRLRP NR DE PDK AAVPKFGEWD S+PASAD YTHIFNKVREEK   AG  PGTPN R +VIR QPAN KAQ CCF WG+K
Sbjct:  129 SVERSPLHRQAKTPGRDSPSWEGKSTYDSSHGTPGRSRLRPVNRDDEIPDKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNTPGTPNGRSYVIRNQPANDKAQGCCFFWGRK 248

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TrEMBL
Match: C6TB99_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.437e-49
Identity = 90/120 (75.00%), Postives = 100/120 (83.33%), Query Frame = 3

Query:   27 SVDRSPLHRQARAPGRDSPSSEGKNSYDSSHGIPGRSRLRPANRVDETPDKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERPHVIRRQPANGKAQCCCFAWGKK 386
            S++RSPLHRQARAPGRDSP  E KNS+D+S G PGRSRLRP NR DETPDKGAAVPKFG+WDV+NP+SAD +THIFNKVREE+QG  G  PGTPNERP  IR Q  + K QCCCFAWG K
Sbjct:  126 SIERSPLHRQARAPGRDSPQWEPKNSHDNSQGTPGRSRLRPVNRGDETPDKGAAVPKFGDWDVNNPSSADGFTHIFNKVREERQGVPGQVPGTPNERPQAIRGQSNDDKVQCCCFAWGGK 245

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TrEMBL
Match: D2D0J1_MALDO (RIN4-like protein OS=Malus domestica GN=RIN4-1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.090e-38
Identity = 80/121 (66.12%), Postives = 94/121 (77.69%), Query Frame = 3

Query:   27 SVDRSPLHRQARAPGRDSPSSEGKNSYDSSHGIPGRSRLRPANRVDETPDKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERPHV-IRRQPANGKAQCCCFAWGKK 386
            SV+RSPLHR AR  GRDSPS EGK SY+SSHG P RSRL+P    DE+P+KGAAVPKFGEWD ++PASAD +THIFNKVREEK   AG APGTP+   +   R+Q +N  A+CCCF WG+K
Sbjct:  125 SVERSPLHRNARVSGRDSPSWEGKASYESSHGTPARSRLKPR---DESPEKGAAVPKFGEWDENDPASADGFTHIFNKVREEK---AGKAPGTPSHPSYQDARKQGSNDSAKCCCFPWGRK 239

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TrEMBL
Match: B9T3D0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1750330 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.724e-37
Identity = 76/125 (60.80%), Postives = 94/125 (75.20%), Query Frame = 3

Query:   27 SVDRSPLHRQARAPGRDS----PSSEGKNSYDSSHGIPGRSRLRPANRVDETPDKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERPHVIRRQP-ANGKAQCCCFAWGKK 386
            S+++SPLH +A+  GR S    P+ EGK SY+SSHG PGRSRL+P    DE+PDKGAAVPKFGEWD +NPASAD YTHIFNKVREE+Q GAG  PG P E P+   R+P ++  ++ CCF WG+K
Sbjct:  105 SLEQSPLHHKAKISGRGSGAPSPAWEGKGSYESSHGTPGRSRLKPKG--DESPDKGAAVPKFGEWDENNPASADGYTHIFNKVREERQIGAGKVPGMPTESPYRTSRKPTSSNSSKSCCFPWGRK 227

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TrEMBL
Match: D2D0J2_MALDO (RIN4-like protein OS=Malus domestica GN=RIN4-2 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.147e-36
Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 3

Query:   27 SVDRSPLHRQARAPGRDSPSSEGKNSYDSSHGIPGRSRLRPANRVDETPDKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERPHV-IRRQPANGKAQCCCFAWGKK 386
            SV+RSPLHR AR  GRDSPS EGK SY++SHG PGRSRL+P    DE+P+KGAAVPKFGEWD ++PASAD +THIFNKVREE+   AG  PGTP++  +   RRQ +N  A+ CCF W +K
Sbjct:  127 SVERSPLHRNARVTGRDSPSWEGKASYETSHGTPGRSRLKPR---DESPEKGAAVPKFGEWDENDPASADGFTHIFNKVREER---AGKVPGTPSQPSYQDARRQGSNDSAKSCCFPWSRK 241

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TrEMBL
Match: B9GQK9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_709976 PE=4 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.147e-36
Identity = 76/124 (61.29%), Postives = 91/124 (73.39%), Query Frame = 3

Query:   27 SVDRSPLHRQARAPGRDS----PSSEGKNSYDSSHGIPGRSRLRPANRVDETPDKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERPHV-IRRQPANGKAQCCCFAWGK 383
            S+++SP+H  AR  GR+S    PS EGKNS D SHG PGRSRLRP    DE+PDKGAAVPKFG+WD +NP+SAD YTHIFNKVREEKQ G G  PG P E  +  +R+Q  +  A+CCCF WG+
Sbjct:  142 SMEQSPIHNHARISGRNSGAPSPSWEGKNSNDGSHGTPGRSRLRPKG--DESPDKGAAVPKFGDWDENNPSSADGYTHIFNKVREEKQIGEGKMPGMPTESSNAYVRKQTPSDSAKCCCFPWGR 263

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TrEMBL
Match: D2J0X0_9ASTR (RPM1 interacting protein 4 transcript 2 OS=Lactuca indica GN=Rin4 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.739e-29
Identity = 71/126 (56.35%), Postives = 89/126 (70.63%), Query Frame = 3

Query:   27 SVDRSPLH-----RQARAPGRDSPSSEGKNSYDSSHGIPGRSRLRPANRVDETPDKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERP--HVIRRQPANGKAQCCCFAWGK 383
            S DRSPLH     + A   G  SP+ EGKNSYDSSHG P RSR++PA R D++PD+GAAVP+FGEWD +NP+SAD+YTHIFNKVREE+  G+  A G+ + RP  ++ R Q +N K  C CF   K
Sbjct:  122 SFDRSPLHPHYQAKVAAGKGSGSPAWEGKNSYDSSHGTPSRSRMKPA-RGDDSPDRGAAVPRFGEWDENNPSSADNYTHIFNKVREERVTGSXMASGS-DARPNYNIPRDQKSNNK--CSCFPSSK 243

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TAIR peptide
Match: AT3G25070.1 (| Symbols: RIN4 | RPM1 interacting protein 4 | chr3:9132458-9133747 FORWARD LENGTH=211)

HSP 1 Score: 102.064 bits (253), Expect = 1.346e-22
Identity = 56/116 (48.28%), Postives = 72/116 (62.07%), Query Frame = 3

Query:   51 RQARAPGRDSPSSEG---KNSYDSSHGIPGRSRLRPAN-RVDETPDKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERPHVIRRQPANGKAQCCCFAWGKK 386
            RQ RA   +S  ++    KNSYD +    G+SR +P N R DE+P+K   VPKFG+WD +NP+SAD YTHIFNKVREE+  GA  + G+     H   R P N  + CCCF +G K
Sbjct:  102 RQGRASQNNSYDNKSPLHKNSYDGT----GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVS-GSSRTPTHQSSRNP-NNTSSCCCFGFGGK 211

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TAIR peptide
Match: AT5G55850.3 (| Symbols: NOI | RPM1-interacting protein 4 (RIN4) family protein | chr5:22603617-22604850 FORWARD LENGTH=95)

HSP 1 Score: 60.4622 bits (145), Expect = 4.491e-10
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 3

Query:  174 DKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNE 314
            DKG  +PKFGEWDV++PASA+ +T IFNK R+EK+ G    PG+P +
Sbjct:   19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG--KPGSPGK 63

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TAIR peptide
Match: AT5G55850.2 (| Symbols: NOI | RPM1-interacting protein 4 (RIN4) family protein | chr5:22603617-22604951 FORWARD LENGTH=130)

HSP 1 Score: 60.4622 bits (145), Expect = 4.491e-10
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 3

Query:  174 DKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNE 314
            DKG  +PKFGEWDV++PASA+ +T IFNK R+EK+ G    PG+P +
Sbjct:   19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG--KPGSPGK 63

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TAIR peptide
Match: AT5G55850.1 (| Symbols: NOI | RPM1-interacting protein 4 (RIN4) family protein | chr5:22603617-22604951 FORWARD LENGTH=114)

HSP 1 Score: 60.4622 bits (145), Expect = 4.491e-10
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 3

Query:  174 DKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNE 314
            DKG  +PKFGEWDV++PASA+ +T IFNK R+EK+ G    PG+P +
Sbjct:    3 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG--KPGSPGK 47

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TAIR peptide
Match: AT2G04410.1 (| Symbols: | RPM1-interacting protein 4 (RIN4) family protein | chr2:1534012-1535040 REVERSE LENGTH=73)

HSP 1 Score: 58.5362 bits (140), Expect = 1.707e-9
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 3

Query:  174 DKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGG 284
            DKG  +PKFGEWDV++P+SA+ +T IFNK R EK+GG
Sbjct:    3 DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGG 39

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TAIR peptide
Match: AT5G63270.1 (| Symbols: | RPM1-interacting protein 4 (RIN4) family protein | chr5:25365498-25365949 REVERSE LENGTH=80)

HSP 1 Score: 51.9878 bits (123), Expect = 1.597e-7
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 3

Query:  174 DKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQ----GGAG 290
            +KG  +PKFGEWDV+NPASA+ +T IF+K  +EK+     GAG
Sbjct:    4 NKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAG 46

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TAIR peptide
Match: AT2G17660.1 (| Symbols: | RPM1-interacting protein 4 (RIN4) family protein | chr2:7673359-7673568 FORWARD LENGTH=69)

HSP 1 Score: 51.6026 bits (122), Expect = 2.086e-7
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 3

Query:  174 DKGAAVPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERPHVIRRQPANGKAQCCCFA 374
            + G A+PKFGEWDV++PA+AD +T IF+K  E+K+   G +    N +      +PA  K  C  FA
Sbjct:    5 EAGRALPKFGEWDVNDPATADGFTVIFSKAGEDKK--TGRSSTKTNSQRKQDGDKPAVKKWLCFTFA 69

[Close]

BLAST of Cicer_arietinum_v1_Contig763 vs. TAIR peptide
Match: AT5G40645.1 (| Symbols: | RPM1-interacting protein 4 (RIN4) family protein | chr5:16280410-16280883 REVERSE LENGTH=73)

HSP 1 Score: 50.447 bits (119), Expect = 4.648e-7
Identity = 24/61 (39.34%), Postives = 37/61 (60.66%), Query Frame = 3

Query:  189 VPKFGEWDVSNPASADSYTHIFNKVREEKQGGAGYAPGTPNERPHVIRRQPANGKAQCCCF 371
            +PKFGEWDV++PASA+ +T IF K R++K+  A     +     +  + +P   K + CCF
Sbjct:   15 LPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAASQRRDNNKSQDEPT--KKRFCCF 73

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig763 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig763 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig763 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig763 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
RIN4_ARATH	1.129e-21	48.28	RPM1-interacting protein 4 OS=Arabidopsis thaliana...	[more]

BLAST of Cicer_arietinum_v1_Contig763 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FHG3_MEDTR	4.952e-56	88.52	Putative uncharacterized protein OS=Medicago trunc...	[more]
C6TNP3_SOYBN	3.321e-52	78.05	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6TH04_SOYBN	2.380e-50	77.50	Putative uncharacterized protein OS=Glycine max PE...	[more]
B7FGR2_MEDTR	2.015e-49	77.50	Putative uncharacterized protein OS=Medicago trunc...	[more]
C6TB99_SOYBN	3.437e-49	75.00	Putative uncharacterized protein OS=Glycine max PE...	[more]
D2D0J1_MALDO	2.090e-38	66.12	RIN4-like protein OS=Malus domestica GN=RIN4-1 PE=...	[more]
B9T3D0_RICCO	6.724e-37	60.80	Putative uncharacterized protein OS=Ricinus commun...	[more]
D2D0J2_MALDO	1.147e-36	63.64	RIN4-like protein OS=Malus domestica GN=RIN4-2 PE=...	[more]
B9GQK9_POPTR	1.147e-36	61.29	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D2J0X0_9ASTR	6.739e-29	56.35	RPM1 interacting protein 4 transcript 2 OS=Lactuca...	[more]

BLAST of Cicer_arietinum_v1_Contig763 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 8


Match Name	E-value	Identity	Description
AT3G25070.1	1.346e-22	48.28	\| Symbols: RIN4 \| RPM1 interacting protein 4 \| chr...	[more]
AT5G55850.3	4.491e-10	57.45	\| Symbols: NOI \| RPM1-interacting protein 4 (RIN4)...	[more]
AT5G55850.2	4.491e-10	57.45	\| Symbols: NOI \| RPM1-interacting protein 4 (RIN4)...	[more]
AT5G55850.1	4.491e-10	57.45	\| Symbols: NOI \| RPM1-interacting protein 4 (RIN4)...	[more]
AT2G04410.1	1.707e-9	64.86	\| Symbols: \| RPM1-interacting protein 4 (RIN4) fa...	[more]
AT5G63270.1	1.597e-7	55.81	\| Symbols: \| RPM1-interacting protein 4 (RIN4) fa...	[more]
AT2G17660.1	2.086e-7	41.79	\| Symbols: \| RPM1-interacting protein 4 (RIN4) fa...	[more]
AT5G40645.1	4.648e-7	39.34	\| Symbols: \| RPM1-interacting protein 4 (RIN4) fa...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RPM1-interacting protein 4, defence response	PFAM	PF05627	AvrRpt-cleavage	coord: 56..93 score: 2.5

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig763 ID=Cicer_arietinum_v1_Contig763; Name=Cicer_arietinum_v1_Contig763; organism=Cicer arietinum; type=contig; length=446bp
AATTAGCGTGGTCGCGGCCGAGGNACAGCGTAGATCGATCACCCCTTCAT
CGCCAAGCTAGAGCTCCTGGCAGAGATAGTCCCTCATCAGAAGGAAAGAA
TTCCTATGACAGCAGCCATGGTATACCGGGAAGATCCCGGTTAAGACCTG
CTAATCGAGTGGATGAAACTCCTGATAAAGGTGCTGCTGTTCCAAAGTTC
GGGGAGTGGGATGTGAGTAACCCTGCATCAGCTGACAGCTATACTCACAT
TTTCAACAAAGTGAGAGAAGAGAAACAAGGCGGGGCCGGATATGCACCCG
GAACACCTAACGAGAGGCCGCATGTTATCCGCAGGCAACCTGCAAATGGC
AAAGCACAGTGTTGCTGCTTTGCTTGGGGCAAAAAATGACTTGTTTGGAA
AGTTTGAATTCTAAGAAGGTGAAAAATGGTGTTGTGAATGTTCATG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

Search form

Cicer_arietinum_v1_Contig763