Lens_culinaris_v1_Contig175

Contig Overview
NameLens_culinaris_v1_Contig175
Unique NameLens_culinaris_v1_Contig175
Typecontig
OrganismLens culinaris (lentil)
Sequence length844
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GT625747ESTGT625747:1..518 -
GT626598ESTGT626598:23..844 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
KEGG analysis for Lens culinaris unigene v12011-01-05
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GT625747GT625747Lens culinarisEST
GT626598GT626598Lens culinarisEST


Homology
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TrEMBL
Match: B9SC65_RICCO (Splicing factor, arginine/serine-rich, putative OS=Ricinus communis GN=RCOM_1408100 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.054e-25
Identity = 70/105 (66.67%), Postives = 77/105 (73.33%), Query Frame = -3 
Query:  525 RSSSGCILEALHVDPASGVSIDK--GAKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQPGEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 833
            R  SG ILEALHVDPASGV++DK    KV+KP+VST                  + QPGEKKETPQERLKRIM+KQLNKQIKKDTAAE+AKKREQER R EKLAE
Sbjct:  377 RPYSGRILEALHVDPASGVTLDKDKSTKVVKPAVSTSSALSKLTKASASGGPSKQ-QPGEKKETPQERLKRIMSKQLNKQIKKDTAAEMAKKREQERQRLEKLAE 480
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TrEMBL
Match: D7SVX8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00022130001 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.004e-25
Identity = 70/105 (66.67%), Postives = 75/105 (71.43%), Query Frame = -3 
Query:  525 RSSSGCILEALHVDPASGVSIDKG--AKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQPGEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 833
            R SSG ILEALHVDPASG+S+DK   +KVLKPSVST                    Q GEKKE PQERLKRIM+KQLNKQIKKDTA E+AKKREQER R EKLAE
Sbjct:  373 RPSSGRILEALHVDPASGISLDKEKQSKVLKPSVSTSSALSKLSKPTTIGGPLK--QQGEKKERPQERLKRIMSKQLNKQIKKDTAVEMAKKREQERQRLEKLAE 475
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TrEMBL
Match: A5BA52_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032062 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.004e-25
Identity = 70/105 (66.67%), Postives = 75/105 (71.43%), Query Frame = -3 
Query:  525 RSSSGCILEALHVDPASGVSIDKG--AKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQPGEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 833
            R SSG ILEALHVDPASG+S+DK   +KVLKPSVST                    Q GEKKE PQERLKRIM+KQLNKQIKKDTA E+AKKREQER R EKLAE
Sbjct:  357 RPSSGRILEALHVDPASGISLDKEKQSKVLKPSVSTSSALSKLSKPTTIGGPLK--QQGEKKERPQERLKRIMSKQLNKQIKKDTAVEMAKKREQERQRLEKLAE 459
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TrEMBL
Match: B8A0Y9_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.429e-22
Identity = 67/105 (63.81%), Postives = 74/105 (70.48%), Query Frame = -3 
Query:  525 RSSSGCILEALHVDPASGVSID--KGAKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQPGEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 833
            R S G ILEALH DPAS +S++  + AK+LKPS ST                   PQ  EKKETPQERLKRIM+KQLNKQIKKDTAAE+AKKREQER RQEKLAE
Sbjct:  161 RLSGGQILEALHSDPASSLSVEQERTAKLLKPSPSTSSALAKLSKVASGGTGKT-PQT-EKKETPQERLKRIMSKQLNKQIKKDTAAEIAKKREQERQRQEKLAE 263
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TrEMBL
Match: D7MB00_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_490906 PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.686e-21
Identity = 65/108 (60.19%), Postives = 70/108 (64.81%), Query Frame = -3 
Query:  525 LSCRSSSGCILEALHVDPASGVSI--DKGAKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQPGEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 842
            L  R S G ILEALHVDPASGVS+  DK  K  KP+VST                  +    EKKETPQERLKRIMNKQL KQIKKD+A E AKKREQER R EK+AE
Sbjct:  368 LLSRPSPGHILEALHVDPASGVSLEKDKMVKTAKPTVSTSTALAKLSKAGTSSSKQTQ---AEKKETPQERLKRIMNKQLTKQIKKDSATETAKKREQERQRLEKIAE 472
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TrEMBL
Match: O23187_ARATH (Putative uncharacterized protein AT4g36980 OS=Arabidopsis thaliana GN=C7A10.380 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 7.814e-21
Identity = 64/107 (59.81%), Postives = 69/107 (64.49%), Query Frame = -3 
Query:  525 LSCRSSSGCILEALHVDPASGVSIDKGAKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQP-GEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 842
            L  R S G ILEALHVDPAS +S++K  KV KP+ ST                    Q   EKKETPQERLKRIMNKQL KQIKKD+A E AKKREQER R EKLAE
Sbjct:  315 LLSRPSPGRILEALHVDPASDISLEKD-KVAKPAKSTVSTSTALAKLSKVAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDSATETAKKREQERQRLEKLAE 420
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TrEMBL
Match: A8MS51_ARATH (Putative uncharacterized protein At4g36980.1 OS=Arabidopsis thaliana GN=At4g36980 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 7.814e-21
Identity = 64/107 (59.81%), Postives = 69/107 (64.49%), Query Frame = -3 
Query:  525 LSCRSSSGCILEALHVDPASGVSIDKGAKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQP-GEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 842
            L  R S G ILEALHVDPAS +S++K  KV KP+ ST                    Q   EKKETPQERLKRIMNKQL KQIKKD+A E AKKREQER R EKLAE
Sbjct:  368 LLSRPSPGRILEALHVDPASDISLEKD-KVAKPAKSTVSTSTALAKLSKVAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDSATETAKKREQERQRLEKLAE 473
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TrEMBL
Match: Q10K55_ORYSJ (Expressed protein OS=Oryza sativa subsp. japonica GN=LOC_Os03g27840 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.021e-20
Identity = 63/105 (60.00%), Postives = 70/105 (66.67%), Query Frame = -3 
Query:  525 RSSSGCILEALHVDPASGVSID--KGAKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQPGEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 833
            RSS G ILEALH DPAS +S++  K  K LK   ST                  +    EKKETPQERLKRIM+KQLNKQI+KDTAAE+AKKREQER RQEKLAE
Sbjct:  373 RSSGGQILEALHSDPASSLSVEQEKSTKNLKAPTSTSALVKLSKGATGGPGKTVRT---EKKETPQERLKRIMSKQLNKQIRKDTAAEIAKKREQERQRQEKLAE 474
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TrEMBL
Match: B8AQX4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11912 PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.021e-20
Identity = 63/105 (60.00%), Postives = 70/105 (66.67%), Query Frame = -3 
Query:  525 RSSSGCILEALHVDPASGVSID--KGAKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQPGEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 833
            RSS G ILEALH DPAS +S++  K  K LK   ST                  +    EKKETPQERLKRIM+KQLNKQI+KDTAAE+AKKREQER RQEKLAE
Sbjct:  373 RSSGGQILEALHSDPASSLSVEQEKSTKNLKAPTSTSALVKLSKGAAGGPGKTVQT---EKKETPQERLKRIMSKQLNKQIRKDTAAEIAKKREQERQRQEKLAE 474
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TrEMBL
Match: B9F8V4_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_11149 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.969e-20
Identity = 62/105 (59.05%), Postives = 70/105 (66.67%), Query Frame = -3 
Query:  525 RSSSGCILEALHVDPASGVSID--KGAKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQPGEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 833
            RSS G ILEALH DPAS +S++  K  K LK   ST                  +    EKKETPQERLKRIM+KQLNKQI+KDTAAE+AKKREQER RQ+KLAE
Sbjct:  373 RSSGGQILEALHSDPASSLSVEQEKSTKNLKAPTSTSALVKLSKGATGGPGKTVRT---EKKETPQERLKRIMSKQLNKQIRKDTAAEIAKKREQERQRQKKLAE 474
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TAIR peptide
Match: AT4G36980.3 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147). | chr4:17433861-17437012 REVERSE LENGTH=554)

HSP 1 Score: 105.145 bits (261), Expect = 4.922e-23
Identity = 64/107 (59.81%), Postives = 69/107 (64.49%), Query Frame = -3 
Query:  525 LSCRSSSGCILEALHVDPASGVSIDKGAKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQP-GEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 842
            L  R S G ILEALHVDPAS +S++K  KV KP+ ST                    Q   EKKETPQERLKRIMNKQL KQIKKD+A E AKKREQER R EKLAE
Sbjct:  367 LLSRPSPGRILEALHVDPASDISLEKD-KVAKPAKSTVSTSTALAKLSKVAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDSATETAKKREQERQRLEKLAE 472
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TAIR peptide
Match: AT4G36980.4 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147). | chr4:17433861-17437012 REVERSE LENGTH=556)

HSP 1 Score: 105.145 bits (261), Expect = 4.922e-23
Identity = 64/107 (59.81%), Postives = 69/107 (64.49%), Query Frame = -3 
Query:  525 LSCRSSSGCILEALHVDPASGVSIDKGAKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQP-GEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 842
            L  R S G ILEALHVDPAS +S++K  KV KP+ ST                    Q   EKKETPQERLKRIMNKQL KQIKKD+A E AKKREQER R EKLAE
Sbjct:  368 LLSRPSPGRILEALHVDPASDISLEKD-KVAKPAKSTVSTSTALAKLSKVAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDSATETAKKREQERQRLEKLAE 473
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TAIR peptide
Match: AT4G36980.2 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); Has 5391 Blast hits to 4388 proteins in 280 species: Archae - 1; Bacteria - 114; Metazoa - 3014; Fungi - 666; Plants - 308; Viruses - 14; Other Eukaryotes - 1274 (source: NCBI BLink). | chr4:17434283-17437012 REVERSE LENGTH=507)

HSP 1 Score: 105.145 bits (261), Expect = 4.922e-23
Identity = 64/107 (59.81%), Postives = 69/107 (64.49%), Query Frame = -3 
Query:  525 LSCRSSSGCILEALHVDPASGVSIDKGAKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQP-GEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 842
            L  R S G ILEALHVDPAS +S++K  KV KP+ ST                    Q   EKKETPQERLKRIMNKQL KQIKKD+A E AKKREQER R EKLAE
Sbjct:  368 LLSRPSPGRILEALHVDPASDISLEKD-KVAKPAKSTVSTSTALAKLSKVAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDSATETAKKREQERQRLEKLAE 473
[Close]
BLAST of Lens_culinaris_v1_Contig175 vs. TAIR peptide
Match: AT4G36980.1 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink). | chr4:17433861-17437012 REVERSE LENGTH=555)

HSP 1 Score: 105.145 bits (261), Expect = 4.922e-23
Identity = 64/107 (59.81%), Postives = 69/107 (64.49%), Query Frame = -3 
Query:  525 LSCRSSSGCILEALHVDPASGVSIDKGAKVLKPSVSTXXXXXXXXXXXXXXXXXXKPQP-GEKKETPQERLKRIMNKQLNKQIKKDTAAELAKKREQERHRQEKLAE 842
            L  R S G ILEALHVDPAS +S++K  KV KP+ ST                    Q   EKKETPQERLKRIMNKQL KQIKKD+A E AKKREQER R EKLAE
Sbjct:  368 LLSRPSPGRILEALHVDPASDISLEKD-KVAKPAKSTVSTSTALAKLSKVAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDSATETAKKREQERQRLEKLAE 473
The following BLAST results are available for this feature:
BLAST of Lens_culinaris_v1_Contig175 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9SC65_RICCO1.054e-2566.67Splicing factor, arginine/serine-rich, putative OS... [more]
D7SVX8_VITVI4.004e-2566.67Whole genome shotgun sequence of line PN40024, sca... [more]
A5BA52_VITVI4.004e-2566.67Putative uncharacterized protein OS=Vitis vinifera... [more]
B8A0Y9_MAIZE2.429e-2263.81Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
D7MB00_ARALY2.686e-2160.19Putative uncharacterized protein OS=Arabidopsis ly... [more]
O23187_ARATH7.814e-2159.81Putative uncharacterized protein AT4g36980 OS=Arab... [more]
A8MS51_ARATH7.814e-2159.81Putative uncharacterized protein At4g36980.1 OS=Ar... [more]
Q10K55_ORYSJ1.021e-2060.00Expressed protein OS=Oryza sativa subsp. japonica ... [more]
B8AQX4_ORYSI1.021e-2060.00Putative uncharacterized protein OS=Oryza sativa s... [more]
B9F8V4_ORYSJ2.969e-2059.05Putative uncharacterized protein OS=Oryza sativa s... [more]
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BLAST of Lens_culinaris_v1_Contig175 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 4
Match NameE-valueIdentityDescription
AT4G36980.34.922e-2359.81| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
AT4G36980.44.922e-2359.81| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
AT4G36980.24.922e-2359.81| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
AT4G36980.14.922e-2359.81| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 1..14
score: NAcoord: 16..39
score
NoneNo IPR availableSEGsegsegcoord: 9..27
score: NAcoord: 30..63
score
NoneNo IPR availableSEGsegsegcoord: 8..32
score
NoneNo IPR availableSEGsegsegcoord: 21..32
score: NAcoord: 46..65
score
NoneNo IPR availableSEGsegsegcoord: 38..56
score: NAcoord: 107..197
score

Sequences
The following sequences are available for this feature:

contig sequence

>Lens_culinaris_v1_Contig175 ID=Lens_culinaris_v1_Contig175; Name=Lens_culinaris_v1_Contig175; organism=Lens culinaris; type=contig; length=844bp
ACAAGGAACCATGCAAATTTGGATTCCACATAGACAACGAGGTTTTCGTA
CATGAGAAATATGTACCTTGATCAGACACTTCAGAGACACCAAATTACTT
GCAAACTATGAATACTAAATATACAATATCAAATGCTAAACATATTCAAA
AAGATTGCCCACCACAACTTCAACACAACTAATAAGATCAATAAATAAAC
ATATTGCATTCAATCCTCATTGGCCTTTCATGCATAATGATTTCATCAGT
ACCTTGAACGGTTTCTTACCCTGGGAGAACGAGAATAAGGAGAGCGCGAT
CGAGTAGGGGAATGAATGCGAGAAGGGGACCGAGAACGGGTGCGAGAAGG
GGACCGAGAATGGGTACGGGAAGGGGATCTTGAATGAGAGCGAGAACTAG
AGTGATATCTTCTGGAGCCCCTGCTTCGACTTGGACTTCTACTACTACGC
CTGTATCTCCTTGGAGGGGATCGACTGTAACTTCTGCTGCGGCTGCGGCG
TCTGAACCTACTCAATCGACTAGTTTCAGCAAGTTTTTCCTGCCTATGTC
GCTCCTGCTCTCTTTTCTTAGCTAGTTCTGCAGCAGTATCTTTTTTAATT
TGTTTGTTTAGTTGCTTGTTCATGATCCTTTTAAGTCTCTCTTGAGGAGT
TTCTTTCTTCTCCCCTGGTTGAGGTTTTAAGAGCCCTCCAGAACCACTTG
CCTTTAACTTTGCTAGTGCTGAGCCTGAAGATGTGCTTACAGATGGCTTC
AAGACTTTTGCACCTTTATCAATAGATACACCGGAAGCAGGATCGACATG
CAATGCTTCAAGTATGCAACCAGATGATGACCTGCATGACAGTA
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