Lens_culinaris_v1_Contig953

Contig Overview


Name	Lens_culinaris_v1_Contig953
Unique Name	Lens_culinaris_v1_Contig953
Type	contig
Organism	Lens culinaris (lentil)
Sequence length	771

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
GT618788	EST	GT618788:1..749 -	Lens culinaris unigene v1	n/a
GT627943	EST	GT627943:49..771 +	Lens culinaris unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
KEGG analysis for Lens culinaris unigene v1	2011-01-05
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GT618788	GT618788	Lens culinaris	EST
GT627943	GT627943	Lens culinaris	EST

Homology

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. SwissProt
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.296e-50
Identity = 99/115 (86.09%), Postives = 103/115 (89.57%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSGAKIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKLTWTAMYRKQHKKDIAQE           PYSRSIVGATLEVIQK+R+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. SwissProt
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.888e-50
Identity = 99/115 (86.09%), Postives = 102/115 (88.70%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSGAKIYPGRGIRFIR DSQVFLFVNSKCKRYFHN+LKPSKLTWTAM+RKQHKKD AQE           PYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. SwissProt
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.925e-50
Identity = 99/115 (86.09%), Postives = 101/115 (87.83%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSG KIYPGRGIRFIRSDSQVFLF+NSKCKRYFHNKLKPSKL WTAMYRKQHKKD AQE           PYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. SwissProt
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 6.433e-50
Identity = 99/115 (86.09%), Postives = 101/115 (87.83%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSG KIYPGRGIRFIRSDSQVFLF+NSKCKRYFHNKLKPSKL WTAMYRKQHKKD AQE           PYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. SwissProt
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.021e-48
Identity = 95/115 (82.61%), Postives = 99/115 (86.09%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSG KIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKP+KL WTAMYRKQHKKDI  E           PYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. SwissProt
Match: RL24B_SCHPO (60S ribosomal protein L24-B OS=Schizosaccharomyces pombe GN=rpl24b PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.304e-23
Identity = 52/112 (46.43%), Postives = 76/112 (67.86%), Query Frame = 1

Query:   88 LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALRE 423
            +K E+C FSG+K+YPG G  F+R D++VF FVN K +  F  +  P +L+WT +YR+ HKK I++E            + R IVGA L+VI++KR+++PEVR AAR AAL++
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEE-HAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQ 111

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. SwissProt
Match: RL24A_SCHPO (60S ribosomal protein L24-A OS=Schizosaccharomyces pombe GN=rpl24a PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.304e-23
Identity = 52/112 (46.43%), Postives = 76/112 (67.86%), Query Frame = 1

Query:   88 LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALRE 423
            +K E+C FSG+K+YPG G  F+R D++VF FVN K +  F  +  P +L+WT +YR+ HKK I++E            + R IVGA L+VI++KR+++PEVR AAR AAL++
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEE-HAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQ 111

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. SwissProt
Match: RL24_RAT (60S ribosomal protein L24 OS=Rattus norvegicus GN=Rpl24 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.675e-22
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 1

Query:   88 LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALR 420
            +K ELC FSG KIYPG G R+ R+D +VF F+N+KC+  F +K  P ++ WT +YR++HKK  ++E            + R+I GA+L  I  KR++KPEVR A RE A+R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEE-IQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIR 110

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. SwissProt
Match: RL24_MOUSE (60S ribosomal protein L24 OS=Mus musculus GN=Rpl24 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.675e-22
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 1

Query:   88 LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALR 420
            +K ELC FSG KIYPG G R+ R+D +VF F+N+KC+  F +K  P ++ WT +YR++HKK  ++E            + R+I GA+L  I  KR++KPEVR A RE A+R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEE-IQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIR 110

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. SwissProt
Match: RL24_MACFA (60S ribosomal protein L24 OS=Macaca fascicularis GN=RPL24 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.675e-22
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 1

Query:   88 LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALR 420
            +K ELC FSG KIYPG G R+ R+D +VF F+N+KC+  F +K  P ++ WT +YR++HKK  ++E            + R+I GA+L  I  KR++KPEVR A RE A+R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEE-IQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIR 110

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TrEMBL
Match: Q1SN35_MEDTR (Ribosomal protein L24E OS=Medicago truncatula GN=MtrDRAFT_AC139525g5v2 PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.280e-52
Identity = 110/147 (74.83%), Postives = 111/147 (75.51%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIXXXXXXXXXXXXXXXXXXXXXXXXXVGKGNVT 522
            MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQE           PYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI                         VGKGNV+
Sbjct:    1 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERVKKTKDEKKAKKAESQAKAQKSVGKGNVS 147

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TrEMBL
Match: B7FGN9_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.798e-50
Identity = 102/115 (88.70%), Postives = 103/115 (89.57%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQE           PYSRSIVG TLEVIQKKR+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGTTLEVIQKKRTEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TrEMBL
Match: B7FN60_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 3.067e-50
Identity = 102/115 (88.70%), Postives = 103/115 (89.57%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKL WTAMYRKQHKKDIAQE           PYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLIWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TrEMBL
Match: A9PHF8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_813781 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 8.923e-50
Identity = 101/115 (87.83%), Postives = 102/115 (88.70%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLF NSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIA E           PYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAAETVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TrEMBL
Match: Q2XPV7_SOLTU (Ribosomal protein L24-like protein OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.165e-49
Identity = 100/115 (86.96%), Postives = 103/115 (89.57%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCK YFHN+LKPSKLTWTAMYRKQHKKDIAQE           PYSRSIVGATLEVIQKKR+E+PEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVRKRRRATKKPYSRSIVGATLEVIQKKRAERPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TrEMBL
Match: B9SRL5_RICCO (60S ribosomal protein L24, putative OS=Ricinus communis GN=RCOM_0840480 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.988e-49
Identity = 99/115 (86.09%), Postives = 103/115 (89.57%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSGAKIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKLTWTAMYRKQHKKDIAQE           PYSRSIVGATLEVIQK+R+EKPEVRDAAREAALREI
Sbjct:   23 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 137

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TrEMBL
Match: D7LJ56_ARALY (RPL24A OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_482640 PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.596e-49
Identity = 100/115 (86.96%), Postives = 101/115 (87.83%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSG KIYPGRGIRFIRSDSQVFLF NSKCKRYFHNKLKPSKLTWTAMYRKQHKKD AQE           PYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TrEMBL
Match: C6SVV1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.391e-49
Identity = 98/115 (85.22%), Postives = 102/115 (88.70%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSGAKIYPG+GIRF+R DSQVFLF NSKCKRYFHN+LKPSKLTWTAMYRKQHKKDIAQE           PYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVRKRRRAAKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TrEMBL
Match: B9ID62_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_824919 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.429e-49
Identity = 99/115 (86.09%), Postives = 102/115 (88.70%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSGAKIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKLTWTAMYRKQHKKDIA E           PYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAETIKKRRRTTKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TrEMBL
Match: A9P8N0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1121327 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.429e-49
Identity = 99/115 (86.09%), Postives = 102/115 (88.70%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSGAKIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKLTWTAMYRKQHKKDIA E           PYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAETIKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TAIR peptide
Match: AT3G53020.1 (| Symbols: STV1, RPL24B, RPL24 | Ribosomal protein L24e family protein | chr3:19660749-19661912 REVERSE LENGTH=163)

HSP 1 Score: 197.978 bits (502), Expect = 4.917e-51
Identity = 99/115 (86.09%), Postives = 101/115 (87.83%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSG KIYPGRGIRFIRSDSQVFLF+NSKCKRYFHNKLKPSKL WTAMYRKQHKKD AQE           PYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TAIR peptide
Match: AT2G36620.1 (| Symbols: RPL24A | ribosomal protein L24 | chr2:15350548-15351819 REVERSE LENGTH=164)

HSP 1 Score: 197.593 bits (501), Expect = 6.422e-51
Identity = 99/115 (86.09%), Postives = 101/115 (87.83%), Query Frame = 1

Query:   82 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 426
            MVLKTELCRFSG KIYPGRGIRFIRSDSQVFLF+NSKCKRYFHNKLKPSKL WTAMYRKQHKKD AQE           PYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREI
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TAIR peptide
Match: AT2G44860.2 (| Symbols: | Ribosomal protein L24e family protein | chr2:18501034-18502128 REVERSE LENGTH=159)

HSP 1 Score: 71.633 bits (174), Expect = 5.315e-13
Identity = 34/95 (35.79%), Postives = 52/95 (54.74%), Query Frame = 1

Query:   88 LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXP--YSRSIVGATLEVIQK 366
            ++ E C F  + IYPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  +R  H KD+ ++           P  Y R++   TL  I+K
Sbjct:    1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKK 95

[Close]

BLAST of Lens_culinaris_v1_Contig953 vs. TAIR peptide
Match: AT2G44860.1 (| Symbols: | Ribosomal protein L24e family protein | chr2:18501034-18502128 REVERSE LENGTH=159)

HSP 1 Score: 71.633 bits (174), Expect = 5.315e-13
Identity = 34/95 (35.79%), Postives = 52/95 (54.74%), Query Frame = 1

Query:   88 LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEXXXXXXXXXXXP--YSRSIVGATLEVIQK 366
            ++ E C F  + IYPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  +R  H KD+ ++           P  Y R++   TL  I+K
Sbjct:    1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKK 95

The following BLAST results are available for this feature:

BLAST of Lens_culinaris_v1_Contig953 vs. SwissProt
BLAST of Lens_culinaris_v1_Contig953 vs. TrEMBL
BLAST of Lens_culinaris_v1_Contig953 vs. TAIR peptide

BLAST of Lens_culinaris_v1_Contig953 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RL24_PRUAV	1.296e-50	86.09	60S ribosomal protein L24 OS=Prunus avium GN=RPL24...	[more]
RL24_CICAR	2.888e-50	86.09	60S ribosomal protein L24 OS=Cicer arietinum GN=RP...	[more]
RL242_ARATH	4.925e-50	86.09	60S ribosomal protein L24-2 OS=Arabidopsis thalian...	[more]
RL241_ARATH	6.433e-50	86.09	60S ribosomal protein L24-1 OS=Arabidopsis thalian...	[more]
RL24_HORVU	6.021e-48	82.61	60S ribosomal protein L24 OS=Hordeum vulgare GN=RP...	[more]
RL24B_SCHPO	2.304e-23	46.43	60S ribosomal protein L24-B OS=Schizosaccharomyces...	[more]
RL24A_SCHPO	2.304e-23	46.43	60S ribosomal protein L24-A OS=Schizosaccharomyces...	[more]
RL24_RAT	5.675e-22	45.95	60S ribosomal protein L24 OS=Rattus norvegicus GN=...	[more]
RL24_MOUSE	5.675e-22	45.95	60S ribosomal protein L24 OS=Mus musculus GN=Rpl24...	[more]
RL24_MACFA	5.675e-22	45.95	60S ribosomal protein L24 OS=Macaca fascicularis G...	[more]

BLAST of Lens_culinaris_v1_Contig953 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q1SN35_MEDTR	4.280e-52	74.83	Ribosomal protein L24E OS=Medicago truncatula GN=M...	[more]
B7FGN9_MEDTR	1.798e-50	88.70	Putative uncharacterized protein OS=Medicago trunc...	[more]
B7FN60_MEDTR	3.067e-50	88.70	Putative uncharacterized protein OS=Medicago trunc...	[more]
A9PHF8_POPTR	8.923e-50	87.83	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q2XPV7_SOLTU	1.165e-49	86.96	Ribosomal protein L24-like protein OS=Solanum tube...	[more]
B9SRL5_RICCO	1.988e-49	86.09	60S ribosomal protein L24, putative OS=Ricinus com...	[more]
D7LJ56_ARALY	2.596e-49	86.96	RPL24A OS=Arabidopsis lyrata subsp. lyrata GN=ARAL...	[more]
C6SVV1_SOYBN	3.391e-49	85.22	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9ID62_POPTR	4.429e-49	86.09	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9P8N0_POPTR	4.429e-49	86.09	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]

BLAST of Lens_culinaris_v1_Contig953 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT3G53020.1	4.917e-51	86.09	\| Symbols: STV1, RPL24B, RPL24 \| Ribosomal protein...	[more]
AT2G36620.1	6.422e-51	86.09	\| Symbols: RPL24A \| ribosomal protein L24 \| chr2:1...	[more]
AT2G44860.2	5.315e-13	35.79	\| Symbols: \| Ribosomal protein L24e family protei...	[more]
AT2G44860.1	5.315e-13	35.79	\| Symbols: \| Ribosomal protein L24e family protei...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000988	Ribosomal protein L24e	GENE3D	2.30.170.20	no description	coord: 31..94 score: 1.6
IPR000988	Ribosomal protein L24e	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 31..191 score: 1.1
IPR000988	Ribosomal protein L24e	PFAM	PF01246	Ribosomal_L24e	coord: 30..100 score: 7.6
IPR000988	Ribosomal protein L24e	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 37..54 score
IPR011017	TRASH	SMART	SM00746	no description	coord: 35..73 score: 0.
None	No IPR available	PANTHER	PTHR10792:SF1	60S RIBOSOMAL PROTEIN L24	coord: 31..191 score: 1.1
None	No IPR available	SEG	seg	seg	coord: 96..106 score: NAcoord: 143..167 score: NAcoord: 175..190 score
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 33..85 score: 1.7
None	No IPR available	SEG	seg	seg	coord: 34..46 score
None	No IPR available	SEG	seg	seg	coord: 40..51 score
None	No IPR available	SEG	seg	seg	coord: 12..36 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Lens_culinaris_v1_Contig953 ID=Lens_culinaris_v1_Contig953; Name=Lens_culinaris_v1_Contig953; organism=Lens culinaris; type=contig; length=771bp
GAGTTCCCGATAATAAGAAAGACTCTAATTGACCGGGGTTGTTTACAGGG
ATGGCGAGATCTAATCGGAAGCCTCAACAAAATGGTTCTCAAGACCGAGC
TGTGCCGTTTTAGTGGTGCCAAGATCTATCCTGGGAGAGGAATCAGGTTT
ATCCGTAGTGATTCACAGGTTTTCCTTTTCGTCAATTCGAAATGCAAAAG
GTACTTCCATAACAAGTTGAAGCCATCTAAGCTTACATGGACTGCGATGT
ATCGGAAGCAACATAAGAAGGACATCGCTCAAGAAGCTGCAAAGAAGAGG
CGCAGAGCTACCAAAAAGCCTTACTCAAGGTCTATTGTTGGTGCTACTTT
GGAAGTTATTCAGAAGAAAAGATCAGAGAAGCCAGAGGTTCGCGATGCTG
CCAGAGAAGCTGCTCTTCGTGAAATTAAGGAGAGGGTGAAGAAAACTAAG
GATGAGAAGAAAGCAAAGAAGGCAGAAAGTCAAGCTAAGGCACAAAAGGC
TGTAGGAAAAGGGAATGTTACCAAGGGTGCTGCATCAAAAGGTCCTAAGC
TTGGTGGTGGGGGCGGGAAGCGCTAAACACTTGGTGTATTGGATTTTTGA
TAGCTCTTGAGTAGAGTTTTGAGATTTTTGCCTTTATAATTTATTTGTTG
GATCAATTCTGTATTTTGTCGTCCTGTCAACTTATTTTGGATGATTTCCC
GGTTACTGACTAGATTTTCTCGTGGAGCAAATTTGAGTTTGTTGCTTTCT
ATTACTTAAACTTTCTTTGTT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR000988	Ribosomal_eL24-rel
IPR011017	TRASH_dom

Search form

Lens_culinaris_v1_Contig953