Pisum_sativum_v1_Contig149

Contig Overview
NamePisum_sativum_v1_Contig149
Unique NamePisum_sativum_v1_Contig149
Typecontig
OrganismPisum sativum (pea)
Sequence length442
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
FG531456ESTFG531456:1..391 +
FG535142ESTFG535142:13..363 +
FG531427ESTFG531427:15..442 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FG531456FG531456Pisum sativumEST
FG535142FG535142Pisum sativumEST
FG531427FG531427Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TrEMBL
Match: B9RDE3_RICCO (Cytohesin 1, 2, 3, putative OS=Ricinus communis GN=RCOM_1612320 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.458e-31
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 2 
Query:   11 QQHWLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 256
            Q  WLIP+GSGKRRELAARAPLIVATLQ I +LGD SFEKNL HFFPLLS LISCEHGS EVQVALSDMLS +VGP+LLRSC
Sbjct: 1699 QSQWLIPVGSGKRRELAARAPLIVATLQAICSLGDASFEKNLSHFFPLLSGLISCEHGSNEVQVALSDMLSSTVGPVLLRSC 1780
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TrEMBL
Match: B9IC07_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_572117 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.458e-31
Identity = 70/82 (85.37%), Postives = 72/82 (87.80%), Query Frame = 2 
Query:   11 QQHWLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 256
            Q  WLIPLGSGKRRELA RAPLIVATLQ I +LGD  FEKNL HFFPLLSSLISCEHGS EVQVALSDMLS SVGP+LLRSC
Sbjct: 1702 QSQWLIPLGSGKRRELATRAPLIVATLQAICSLGDSLFEKNLAHFFPLLSSLISCEHGSNEVQVALSDMLSSSVGPVLLRSC 1783
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TrEMBL
Match: B9GPH8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_644349 PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.247e-31
Identity = 70/79 (88.61%), Postives = 72/79 (91.14%), Query Frame = 2 
Query:   20 WLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 256
            WLIPLGSGKRRELAARAPLIVATLQ I +LGD SFEK L HFFPLLSSLISCEHGS EVQVALSDMLS SVGP+LLRSC
Sbjct:  123 WLIPLGSGKRRELAARAPLIVATLQAICSLGDSSFEKKLPHFFPLLSSLISCEHGSNEVQVALSDMLSSSVGPVLLRSC 201
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TrEMBL
Match: D7U7T4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_48.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027623001 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.970e-29
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 2 
Query:    5 GRQQHWLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 256
            G Q  WLIPLGSGKRRELA RAPL+V TLQ +  LGD SFE+NL  FFPLLSSLI CEHGS EVQVALS+ML  SVGP+LLRSC
Sbjct: 1670 GVQPRWLIPLGSGKRRELATRAPLVVVTLQAVCGLGDTSFERNLAQFFPLLSSLIGCEHGSNEVQVALSEMLRSSVGPVLLRSC 1753
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TrEMBL
Match: C5WQY7_SORBI (Putative uncharacterized protein Sb01g041140 OS=Sorghum bicolor GN=Sb01g041140 PE=4 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.970e-28
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 2 
Query:   17 HWLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 256
            HWLIP+GS KRRELAARAPL+V+TLQ IS LGD +FEKNL  FFPLLS LISCEHGS+EVQVALSDM S  VGPL+L+SC
Sbjct: 1715 HWLIPVGSSKRRELAARAPLVVSTLQAISGLGDSAFEKNLGQFFPLLSGLISCEHGSSEVQVALSDMFSTWVGPLVLQSC 1794
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TrEMBL
Match: Q8S565_ORYSA (Guanine nucleotide-exchange protein GEP2 OS=Oryza sativa GN=GEP2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.777e-28
Identity = 61/80 (76.25%), Postives = 70/80 (87.50%), Query Frame = 2 
Query:   17 HWLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 256
            HWLIP+GS KRRELAARAPL+V+TLQ IS LGD SFEKNL  FFPLL+ LISCEHGS+EVQVALSDM S  VGP++L++C
Sbjct: 1710 HWLIPVGSSKRRELAARAPLVVSTLQAISGLGDSSFEKNLGQFFPLLAGLISCEHGSSEVQVALSDMFSTWVGPVVLQTC 1789
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TrEMBL
Match: Q10P53_ORYSJ (Os03g0246800 protein OS=Oryza sativa subsp. japonica GN=Os03g0246800 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.777e-28
Identity = 61/80 (76.25%), Postives = 70/80 (87.50%), Query Frame = 2 
Query:   17 HWLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 256
            HWLIP+GS KRRELAARAPL+V+TLQ IS LGD SFEKNL  FFPLL+ LISCEHGS+EVQVALSDM S  VGP++L++C
Sbjct: 1710 HWLIPVGSSKRRELAARAPLVVSTLQAISGLGDSSFEKNLGQFFPLLAGLISCEHGSSEVQVALSDMFSTWVGPVVLQTC 1789
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TrEMBL
Match: B9F6R9_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_10127 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.777e-28
Identity = 61/80 (76.25%), Postives = 70/80 (87.50%), Query Frame = 2 
Query:   17 HWLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 256
            HWLIP+GS KRRELAARAPL+V+TLQ IS LGD SFEKNL  FFPLL+ LISCEHGS+EVQVALSDM S  VGP++L++C
Sbjct: 1710 HWLIPVGSSKRRELAARAPLVVSTLQAISGLGDSSFEKNLGQFFPLLAGLISCEHGSSEVQVALSDMFSTWVGPVVLQTC 1789
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TrEMBL
Match: B8AK12_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_10738 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.777e-28
Identity = 61/80 (76.25%), Postives = 70/80 (87.50%), Query Frame = 2 
Query:   17 HWLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 256
            HWLIP+GS KRRELAARAPL+V+TLQ IS LGD SFEKNL  FFPLL+ LISCEHGS+EVQVALSDM S  VGP++L++C
Sbjct: 1710 HWLIPVGSSKRRELAARAPLVVSTLQAISGLGDSSFEKNLGQFFPLLAGLISCEHGSSEVQVALSDMFSTWVGPVVLQTC 1789
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TrEMBL
Match: D7LRV1_ARALY (Guanine nucleotide exchange family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486560 PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.007e-26
Identity = 61/82 (74.39%), Postives = 67/82 (81.71%), Query Frame = 2 
Query:   11 QQHWLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 256
            +  W IPLGSGKRRELAARAPLIVATLQ I  L + SFEKNL   FPLL+SLISCEHGS EVQ AL+DML LSVGP+LL+ C
Sbjct: 1712 EYRWRIPLGSGKRRELAARAPLIVATLQAICTLEEASFEKNLKCLFPLLASLISCEHGSNEVQTALADMLGLSVGPVLLQWC 1793
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TAIR peptide
Match: AT3G60860.1 (| Symbols: | SEC7-like guanine nucleotide exchange family protein | chr3:22484804-22491510 FORWARD LENGTH=1793)

HSP 1 Score: 117.087 bits (292), Expect = 3.972e-27
Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 2 
Query:   11 QQHWLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 256
            +  W IPLGSGKRREL+ARAPLIVATLQ +  L + SFEKNL   FPLL++LISCEHGS EVQ AL+DML LSVGP+LL+ C
Sbjct: 1712 EYRWRIPLGSGKRRELSARAPLIVATLQAMCTLDEASFEKNLKCLFPLLANLISCEHGSNEVQTALADMLGLSVGPVLLQWC 1793
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TAIR peptide
Match: AT1G01960.1 (| Symbols: EDA10 | SEC7-like guanine nucleotide exchange family protein | chr1:330830-337582 REVERSE LENGTH=1750)

HSP 1 Score: 114.775 bits (286), Expect = 1.971e-26
Identity = 52/83 (62.65%), Postives = 67/83 (80.72%), Query Frame = 2 
Query:    8 RQQHWLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 256
            +   W +P GSGK++EL ARAPL+VA +QT+ N+G+  F+KNL   FPL+++LISCEHGS EVQVALSDML  S+GP+LLRSC
Sbjct: 1667 QSSRWAVPSGSGKKKELTARAPLVVAAIQTLGNMGESLFKKNLPELFPLIATLISCEHGSGEVQVALSDMLQTSMGPVLLRSC 1749
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TAIR peptide
Match: AT4G38200.1 (| Symbols: | SEC7-like guanine nucleotide exchange family protein | chr4:17915293-17922502 FORWARD LENGTH=1687)

HSP 1 Score: 63.5438 bits (153), Expect = 5.212e-11
Identity = 28/77 (36.36%), Postives = 49/77 (63.64%), Query Frame = 2 
Query:   14 QHWLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLL 244
            ++W++P+G+  + E AAR+PL+VA L+ +  L   SF++   +FFPLL  L+  EH S++V   LS +    +G ++
Sbjct: 1609 KNWILPMGAASKEEAAARSPLVVAVLKALRELKRDSFKRYAPNFFPLLVELVRSEHSSSQVPQVLSTVFHTCMGAMM 1685
[Close]
BLAST of Pisum_sativum_v1_Contig149 vs. TAIR peptide
Match: AT4G35380.1 (| Symbols: | SEC7-like guanine nucleotide exchange family protein | chr4:16819883-16825960 FORWARD LENGTH=1706)

HSP 1 Score: 59.3066 bits (142), Expect = 9.830e-10
Identity = 28/75 (37.33%), Postives = 47/75 (62.67%), Query Frame = 2 
Query:   20 WLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLL 244
            W++P+ S +  E  AR  L+V++L+ + +L   S +K++  FFPLL  L+  EH S +V   LS++L   +GP+L
Sbjct: 1631 WVLPMESDRVEEATARTSLLVSSLEALCSLEAESLKKHVSSFFPLLVDLVRTEHCSPQVPYVLSNVLKSCIGPIL 1705
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig149 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9RDE3_RICCO1.458e-3184.15Cytohesin 1, 2, 3, putative OS=Ricinus communis GN... [more]
B9IC07_POPTR1.458e-3185.37Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9GPH8_POPTR3.247e-3188.61Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7U7T4_VITVI3.970e-2976.19Whole genome shotgun sequence of line PN40024, sca... [more]
C5WQY7_SORBI1.970e-2878.75Putative uncharacterized protein Sb01g041140 OS=So... [more]
Q8S565_ORYSA9.777e-2876.25Guanine nucleotide-exchange protein GEP2 OS=Oryza ... [more]
Q10P53_ORYSJ9.777e-2876.25Os03g0246800 protein OS=Oryza sativa subsp. japoni... [more]
B9F6R9_ORYSJ9.777e-2876.25Putative uncharacterized protein OS=Oryza sativa s... [more]
B8AK12_ORYSI9.777e-2876.25Putative uncharacterized protein OS=Oryza sativa s... [more]
D7LRV1_ARALY7.007e-2674.39Guanine nucleotide exchange family protein OS=Arab... [more]
back to top
BLAST of Pisum_sativum_v1_Contig149 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 4
Match NameE-valueIdentityDescription
AT3G60860.13.972e-2770.73| Symbols: | SEC7-like guanine nucleotide exchang... [more]
AT1G01960.11.971e-2662.65| Symbols: EDA10 | SEC7-like guanine nucleotide ex... [more]
AT4G38200.15.212e-1136.36| Symbols: | SEC7-like guanine nucleotide exchang... [more]
AT4G35380.19.830e-1037.33| Symbols: | SEC7-like guanine nucleotide exchang... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10663ARF GUANYL-NUCLEOTIDE EXCHANGE FACTORcoord: 3..81
score: 1.3
NoneNo IPR availablePANTHERPTHR10663:SF13CYTOHESIN 1, 2, 3, 4 (GUANINE NUCLEOTIDE-EXCHANGE PROTEIN)coord: 3..81
score: 1.3

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig149 ID=Pisum_sativum_v1_Contig149; Name=Pisum_sativum_v1_Contig149; organism=Pisum sativum; type=contig; length=442bp
TCATGGTAGGCAGCAACATTGGTTGATTCCTCTAGGCTCTGGAAAGCGAA
GAGAGTTAGCTGCACGCGCACCACTCATTGTCGCCACTCTTCAGACCATT
AGTAATTTGGGAGATGTTTCTTTTGAGAAGAATCTGGTGCACTTTTTCCC
TCTTCTCTCAAGCTTGATAAGTTGTGAACATGGATCGACTGAGGTCCAGG
TCGCTCTCAGTGATATGCTTAGTTTATCGGTTGGTCCACTCTTGCTACGG
TCATGTTGATTGCATTAGTAAGATTGGCCCTCCTTTTTGAGATGCAGGAT
ATTTTTTGTCTAGATCTTTTTGTTCATATTTTCTTCCTCTCCCTCCCTCC
CCTTTGATCACTTGACAGAAATAGAGTTTGATAGTGTACCCTAAATTAAT
AGTGATTCTATGTTTAGATATACCTTCCAAGTTCTGCATTTT
back to top