Pisum_sativum_v1_Contig2109

Contig Overview
NamePisum_sativum_v1_Contig2109
Unique NamePisum_sativum_v1_Contig2109
Typecontig
OrganismPisum sativum (pea)
Sequence length735
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GH719884ESTGH719884:1..691 +
CD860178ESTCD860178:27..666 -
FG537742ESTFG537742:229..735 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GH719884GH719884Pisum sativumEST
CD860178CD860178Pisum sativumEST
FG537742FG537742Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig2109 vs. SwissProt
Match: U136_ARATH (UPF0136 membrane protein At2g26240 OS=Arabidopsis thaliana GN=At2g26240 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.467e-24
Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 2 
Query:  269 MALSMSQKLTLGYAILVGAGGVMGYXXXXXXXXXXXXXXXXXXXFYVFTELPGRPVLASSVGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRSS 592
            M  S+SQK TL YA L+G GG+MGY                   +YV+TELPG PVLASS+G+  SAAL  +MGSR+ ++ KV PAG+VS+VSL+MTG YLHG++RSS
Sbjct:    1 MDSSLSQKFTLAYASLLGVGGLMGYLKRGSKISLVAGGGSAALFYYVYTELPGNPVLASSIGIVGSAALTGMMGSRYLRTRKVVPAGLVSVVSLVMTGAYLHGLIRSS 108
[Close]
BLAST of Pisum_sativum_v1_Contig2109 vs. TrEMBL
Match: B7FFA9_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.862e-54
Identity = 125/198 (63.13%), Postives = 130/198 (65.66%), Query Frame = 2 
Query:    2 STIPRSFLAHPPSFPTFTLSNPHSQIAVVSSDSKATSFDLSAPDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SNGDKRKMALSMSQKLTLGYAILVGAGGVMGYXXXXXXXXXXXXXXXXXXXFYVFTELPGRPVLASSVGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRSS 592
            +T  RSFLA PPSFP  +LSN HSQ+AVVSSDSK T FDLSAPDL                                      S+GDKR MALSMSQKLTLGYAILVGAGGVMG+                   FYVFTELPGRPVLASSVGLGISAALL VMGSRFKKSGKVFPAGVVSLVS IMTGGYLHGIMRSS
Sbjct:   30 TTFTRSFLASPPSFPYLSLSNSHSQLAVVSSDSKTTQFDLSAPDLDNTGGGGDIKGNGDDFSGGGGGGEGGGGGDDSGKGEEGSDGDKRNMALSMSQKLTLGYAILVGAGGVMGFLKSGSQKSLLAGGLSSALLFYVFTELPGRPVLASSVGLGISAALLVVMGSRFKKSGKVFPAGVVSLVSFIMTGGYLHGIMRSS 227
[Close]
BLAST of Pisum_sativum_v1_Contig2109 vs. TrEMBL
Match: B8LPI2_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.003e-32
Identity = 75/111 (67.57%), Postives = 82/111 (73.87%), Query Frame = 2 
Query:  260 KRKMALSMSQKLTLGYAILVGAGGVMGYXXXXXXXXXXXXXXXXXXXFYVFTELPGRPVLASSVGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRSS 592
            KR+MALSMSQKLTLGYA LVG GG+MGY                   +YV T+LP RP  AS+VGLG+SA LL VMGSRFK SGK+FPAGVVSLVSLIMTGGYLHGI RSS
Sbjct:  154 KRRMALSMSQKLTLGYAALVGVGGLMGYIKSGSNKSLVSGGLSALLLYYVHTQLPVRPAFASAVGLGVSALLLLVMGSRFKNSGKIFPAGVVSLVSLIMTGGYLHGIFRSS 264
[Close]
BLAST of Pisum_sativum_v1_Contig2109 vs. TrEMBL
Match: B4FL61_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.616e-32
Identity = 78/116 (67.24%), Postives = 86/116 (74.14%), Query Frame = 2 
Query:  251 NGDKRKMA--LSMSQKLTLGYAILVGAGGVMGYXXXXXXXXXXXXXXXXXXXFYVFTELPGRPVLASSVGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRSS 592
            +G++ KM   LSMSQKLTL YA LVGAGGVMGY                   + V T+LP RPVLASS+GLGISAALLSVMGSRFKKSGKVFPAGVVSLVSL+M GGY HGI+RSS
Sbjct:   85 DGEEEKMGQGLSMSQKLTLAYAALVGAGGVMGYMKSGSQKSLAAGGISALVLYVVHTQLPVRPVLASSIGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLVMVGGYFHGILRSS 200
[Close]
BLAST of Pisum_sativum_v1_Contig2109 vs. TrEMBL
Match: C5Y9G2_SORBI (Putative uncharacterized protein Sb06g031070 OS=Sorghum bicolor GN=Sb06g031070 PE=4 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.696e-31
Identity = 72/112 (64.29%), Postives = 83/112 (74.11%), Query Frame = 2 
Query:  257 DKRKMALSMSQKLTLGYAILVGAGGVMGYXXXXXXXXXXXXXXXXXXXFYVFTELPGRPVLASSVGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRSS 592
            +K +  LS+SQKLTL YA LVGAGGVMGY                   ++V T+LP RPV ASS+GLGI+AALLSVMGSRFKKSGK+FPAGVVSLVSL+M GGY HGI+RSS
Sbjct:   95 EKMEQGLSLSQKLTLAYAALVGAGGVMGYMKSGSQKSLAAGGISALVLYFVHTQLPVRPVFASSIGLGIAAALLSVMGSRFKKSGKIFPAGVVSLVSLVMVGGYFHGILRSS 206
[Close]
BLAST of Pisum_sativum_v1_Contig2109 vs. TrEMBL
Match: Q7XPM7_ORYSJ (OSJNBa0060D06.17 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0060D06.17 PE=4 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.893e-31
Identity = 73/115 (63.48%), Postives = 85/115 (73.91%), Query Frame = 2 
Query:  254 GDKRKMA--LSMSQKLTLGYAILVGAGGVMGYXXXXXXXXXXXXXXXXXXXFYVFTELPGRPVLASSVGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRSS 592
            G++ KM   LSMSQK+TL YA LVGAGG MGY                   ++V T+LP RPV ASS+GLGISAALLSVMGSRFKKSGK+FPAGVVSLVSL+M GGY+HGI+RS+
Sbjct:   91 GEEEKMGQGLSMSQKITLAYAALVGAGGAMGYMKSGSQKSLAAGGISALVLYFVHTQLPVRPVFASSIGLGISAALLSVMGSRFKKSGKIFPAGVVSLVSLVMVGGYIHGILRST 205
[Close]
BLAST of Pisum_sativum_v1_Contig2109 vs. TrEMBL
Match: A3AY48_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_16441 PE=4 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.893e-31
Identity = 73/115 (63.48%), Postives = 85/115 (73.91%), Query Frame = 2 
Query:  254 GDKRKMA--LSMSQKLTLGYAILVGAGGVMGYXXXXXXXXXXXXXXXXXXXFYVFTELPGRPVLASSVGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRSS 592
            G++ KM   LSMSQK+TL YA LVGAGG MGY                   ++V T+LP RPV ASS+GLGISAALLSVMGSRFKKSGK+FPAGVVSLVSL+M GGY+HGI+RS+
Sbjct:   91 GEEEKMGQGLSMSQKITLAYAALVGAGGAMGYMKSGSQKSLAAGGISALVLYFVHTQLPVRPVFASSIGLGISAALLSVMGSRFKKSGKIFPAGVVSLVSLVMVGGYIHGILRST 205
[Close]
BLAST of Pisum_sativum_v1_Contig2109 vs. TrEMBL
Match: B9RR06_RICCO (Transmembrane protein 14, putative OS=Ricinus communis GN=RCOM_0708200 PE=4 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.099e-30
Identity = 69/110 (62.73%), Postives = 81/110 (73.64%), Query Frame = 2 
Query:  260 KRKMALSMSQKLTLGYAILVGAGGVMGYXXXXXXXXXXXXXXXXXXXFYVFTELPGRPVLASSVGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRS 589
            K+KMALSMSQKLTLGYA LVG GG MGY                   +YV+T+LP  PV ASS+GLG+S+ LL VMGSRF +S KVFPAGVVSLVSL+MTGGY+HG++RS
Sbjct:  130 KKKMALSMSQKLTLGYAALVGMGGAMGYLKSGSQKSLLAGGLSASVLYYVYTQLPTNPVYASSIGLGVSSVLLGVMGSRFLRSKKVFPAGVVSLVSLVMTGGYIHGVLRS 239
[Close]
BLAST of Pisum_sativum_v1_Contig2109 vs. TrEMBL
Match: B9HCN6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_866999 PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.875e-30
Identity = 71/107 (66.36%), Postives = 78/107 (72.90%), Query Frame = 2 
Query:  269 MALSMSQKLTLGYAILVGAGGVMGYXXXXXXXXXXXXXXXXXXXFYVFTELPGRPVLASSVGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRS 589
            MALSMSQKLTLGYA LVG GG MGY                   +YV+T+LP  PV ASS+GLGISAAL+ VMGSRF KS K+FPAGVVSLVS IMTGGYLHGI+RS
Sbjct:    1 MALSMSQKLTLGYAALVGIGGAMGYMKSGSQKSLLAGGISASVLYYVYTQLPANPVYASSIGLGISAALMGVMGSRFLKSRKIFPAGVVSLVSFIMTGGYLHGILRS 107
[Close]
BLAST of Pisum_sativum_v1_Contig2109 vs. TrEMBL
Match: D7TB54_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_130.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00000275001 PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.449e-30
Identity = 69/105 (65.71%), Postives = 79/105 (75.24%), Query Frame = 2 
Query:  275 LSMSQKLTLGYAILVGAGGVMGYXXXXXXXXXXXXXXXXXXXFYVFTELPGRPVLASSVGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRS 589
            +SMSQKLTLGYA LVG GGVMGY                   +YV+T+LP RP  AS +GLG+SAAL+ VMGSRFKKSGK+FPAGVVSLVSL+MTGGYLHGI+RS
Sbjct:    1 MSMSQKLTLGYAALVGVGGVMGYMKSGSQKSLAAGGLSALLLYYVYTQLPTRPAFASFLGLGLSAALVGVMGSRFKKSGKLFPAGVVSLVSLVMTGGYLHGILRS 105
[Close]
BLAST of Pisum_sativum_v1_Contig2109 vs. TrEMBL
Match: A9SYF6_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_137409 PE=4 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.373e-27
Identity = 61/108 (56.48%), Postives = 76/108 (70.37%), Query Frame = 2 
Query:  275 LSMSQKLTLGYAILVGAGGVMGYXXXXXXXXXXXXXXXXXXXFYVFTELPGRPVLASSVGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRSSSH 598
            +SMSQKLTL YAILVG GG+MG+                   +YV+  LP  PV+AS++GLGIS  LL +MGSR+ +SGKVFPAGVVSL SL+M GGY+HGI+RS+ H
Sbjct:    1 MSMSQKLTLAYAILVGVGGLMGFAKSGSSKSLMAGGGSASILYYVYLNLPSNPVMASAIGLGISGMLLFIMGSRYMESGKVFPAGVVSLFSLVMAGGYIHGIVRSAHH 108
[Close]
BLAST of Pisum_sativum_v1_Contig2109 vs. TAIR peptide
Match: AT3G43520.1 (| Symbols: | Transmembrane proteins 14C | chr3:15406088-15407699 FORWARD LENGTH=240)

HSP 1 Score: 122.094 bits (305), Expect = 3.149e-28
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 2 
Query:  260 KRKMALSMSQKLTLGYAILVGAGGVMGYXXXXXXXXXXXXXXXXXXXFYVFTELPGRPVLASSVGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRS 589
            K+   LSMSQKLTLGYA LVG GG+MGY                    YVF++LP +PVLAS+VG+ ++ AL+ VMG+R+ +S K+FPAGVVS++S IMTGGY+HGIMRS
Sbjct:  129 KKSTPLSMSQKLTLGYAFLVGVGGLMGYLKSGSQKSLLAGGLSAAVLLYVFSQLPTKPVLASTVGVVMAGALMYVMGTRYMRSKKIFPAGVVSIMSFIMTGGYIHGIMRS 238
[Close]
BLAST of Pisum_sativum_v1_Contig2109 vs. TAIR peptide
Match: AT2G26240.1 (| Symbols: | Transmembrane proteins 14C | chr2:11167496-11168373 REVERSE LENGTH=108)

HSP 1 Score: 113.235 bits (282), Expect = 1.463e-25
Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 2 
Query:  269 MALSMSQKLTLGYAILVGAGGVMGYXXXXXXXXXXXXXXXXXXXFYVFTELPGRPVLASSVGLGISAALLSVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRSS 592
            M  S+SQK TL YA L+G GG+MGY                   +YV+TELPG PVLASS+G+  SAAL  +MGSR+ ++ KV PAG+VS+VSL+MTG YLHG++RSS
Sbjct:    1 MDSSLSQKFTLAYASLLGVGGLMGYLKRGSKISLVAGGGSAALFYYVYTELPGNPVLASSIGIVGSAALTGMMGSRYLRTRKVVPAGLVSVVSLVMTGAYLHGLIRSS 108
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2109 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
U136_ARATH1.467e-2453.70UPF0136 membrane protein At2g26240 OS=Arabidopsis ... [more]
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BLAST of Pisum_sativum_v1_Contig2109 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B7FFA9_MEDTR1.862e-5463.13Putative uncharacterized protein OS=Medicago trunc... [more]
B8LPI2_PICSI2.003e-3267.57Putative uncharacterized protein OS=Picea sitchens... [more]
B4FL61_MAIZE2.616e-3267.24Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
C5Y9G2_SORBI1.696e-3164.29Putative uncharacterized protein Sb06g031070 OS=So... [more]
Q7XPM7_ORYSJ2.893e-3163.48OSJNBa0060D06.17 protein OS=Oryza sativa subsp. ja... [more]
A3AY48_ORYSJ2.893e-3163.48Putative uncharacterized protein OS=Oryza sativa s... [more]
B9RR06_RICCO1.099e-3062.73Transmembrane protein 14, putative OS=Ricinus comm... [more]
B9HCN6_POPTR1.875e-3066.36Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7TB54_VITVI2.449e-3065.71Whole genome shotgun sequence of line PN40024, sca... [more]
A9SYF6_PHYPA7.373e-2756.48Predicted protein OS=Physcomitrella patens subsp. ... [more]
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BLAST of Pisum_sativum_v1_Contig2109 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G43520.13.149e-2855.45| Symbols: | Transmembrane proteins 14C | chr3:15... [more]
AT2G26240.11.463e-2553.70| Symbols: | Transmembrane proteins 14C | chr2:11... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005349Uncharacterised protein family UPF0136, TransmembranePANTHERPTHR12668TRANSMEMBRANE PROTEIN 14, 15coord: 83..196
score: 2.6
IPR005349Uncharacterised protein family UPF0136, TransmembranePFAMPF03647Tmemb_14coord: 97..190
score: 2.5
NoneNo IPR availableSEGsegsegcoord: 46..82
score: NAcoord: 115..133
score
NoneNo IPR availableSEGsegsegcoord: 16..37
score
NoneNo IPR availableSEGsegsegcoord: 8..52
score
NoneNo IPR availableSEGsegsegcoord: 16..37
score

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2109 ID=Pisum_sativum_v1_Contig2109; Name=Pisum_sativum_v1_Contig2109; organism=Pisum sativum; type=contig; length=735bp
TTCCACTATCCCTCGCTCCTTCCTCGCCCACCCTCCTTCTTTCCCGACCT
TCACTCTTTCCAATCCACACTCTCAAATCGCAGTTGTCTCTTCTGATTCC
AAGGCCACTTCATTTGACCTAAGTGCCCCAGATTTGGACAACAGCGGCGG
CGGCGGAAGTATCAAAGGTAACGGAGACGATTTTGGCGGCGGCGGAGGCG
GCGGTGAAGGAGGAGGCGGAGACGATAGTAACAAGGGAGAGGAAGGATCG
AACGGAGATAAAAGGAAAATGGCTTTGTCAATGTCTCAGAAATTGACTCT
AGGTTATGCTATTCTCGTCGGAGCGGGTGGTGTAATGGGCTATCTGAAGA
GTGGCAGCAATAAGTCACTTTTGGCTGGTGGTTTGTCTTCTGCACTGCTG
TTTTATGTTTTCACCGAACTACCCGGAAGACCTGTTCTTGCATCATCTGT
GGGCCTTGGTATATCTGCTGCACTTCTTTCGGTGATGGGTTCTCGTTTCA
AGAAATCAGGGAAGGTCTTTCCAGCAGGTGTTGTGTCCCTTGTGTCACTC
ATAATGACAGGTGGTTACTTGCACGGAATTATGCGTAGTAGTTCGCACTA
GAATGTAAATAAAATAAAACAGTGAGATATCCTGTAAACCTCACCATCTT
CGTTGTGGTTTGTACTGTAGACCTGTGGTTTATGTTTGTCATACTCAGAA
CATTTGTTGTGAAATAAAGATGATGAATGTGAAAC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005349TMEM14