Pisum_sativum_v1_Contig2812

Contig Overview
NamePisum_sativum_v1_Contig2812
Unique NamePisum_sativum_v1_Contig2812
Typecontig
OrganismPisum sativum (pea)
Sequence length693
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CD860581ESTCD860581:1..375 +
CD860347ESTCD860347:162..413 +
CD860571ESTCD860571:119..633 -
GH720111ESTGH720111:464..677 -
CD861210ESTCD861210:464..695 -
GH720189ESTGH720189:465..690 +
GH720066ESTGH720066:465..694 +
GH720168ESTGH720168:467..667 -
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
CD860581CD860581Pisum sativumEST
CD860347CD860347Pisum sativumEST
CD860571CD860571Pisum sativumEST
GH720111GH720111Pisum sativumEST
CD861210CD861210Pisum sativumEST
GH720189GH720189Pisum sativumEST
GH720066GH720066Pisum sativumEST
GH720168GH720168Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. SwissProt
Match: LSM7_DICDI (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 9.765e-10
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = -2 
Query:   30 LKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQGN 158
            LKGYDQL+N+ LD+  EF+RD +DPL TTD+ R LGL+VC+G+
Sbjct:   37 LKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGLVVCRGS 79

HSP 2 Score: 20.4014 bits (41), Expect = 9.765e-10
Identity = 7/12 (58.33%), Postives = 11/12 (91.67%), Query Frame = -3 
Query:    2 RGTAVMLVSPTD 37
            RG++VM+V PT+
Sbjct:   77 RGSSVMMVCPTE 88
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. SwissProt
Match: LSM7_HUMAN (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.573e-9
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = -2 
Query:   33 LKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 158
            LKG+D LLNLVLD  +E++RDPDD  K T+ TR LGL+VC+G
Sbjct:   37 LKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRG 78
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. SwissProt
Match: LSM7_MOUSE (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.684e-9
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = -2 
Query:   33 LKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 158
            LKG+D LLNLVLD  +E++RDPDD  K T+ TR LGL+VC+G
Sbjct:   37 LKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCRG 78
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: A3FF19_PEA (Phloem specific protein (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.080e-45
Identity = 94/119 (78.99%), Postives = 94/119 (78.99%), Query Frame = -3 
Query:  335 TKQAKKERMLRSQDYHNHIAGVRREPSVLSDFDRYPNAEMAFNKRVVYDEVEGSXXXXXXHNXXXXXXXXXXXXXXXXXXXPYGGEVIYEEYMDVETNQYNPRRNRPNGLGLQKWKTYR 691
            TKQAKKERMLRSQDYHNHIAGVRREPSVLSDFDRYPNAEMAFNKRVVYDEVEGS      HN                   PYGGEVIYEEYMDVETNQYNPRRNRPNGLGLQKWKTYR
Sbjct:    4 TKQAKKERMLRSQDYHNHIAGVRREPSVLSDFDRYPNAEMAFNKRVVYDEVEGSHRHHHHHNPEIVERVEVVEYERVPEVRPYGGEVIYEEYMDVETNQYNPRRNRPNGLGLQKWKTYR 122
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: Q41666_VICFA (Phloem specific protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.406e-42
Identity = 87/117 (74.36%), Postives = 90/117 (76.92%), Query Frame = -3 
Query:  335 QAKKERMLRSQDYHNHIAGVRREPSVLSDFDRYPNAEMAFNKRVVYDEVEGSXXXXXXHNXXXXXXXXXXXXXXXXXXXPYGGEVIYEEYMDVETNQYNPRRNRPNGLGLQKWKTYR 685
            Q  KERMLRSQDYHNHIAGVRREPSVLS+FDRYPNAEMAFNKRVVYDE+EGS      HN                   PYGGEVIYEEYMDVET+QYNPRRNRPNGLGLQKWKTYR
Sbjct:   26 QTNKERMLRSQDYHNHIAGVRREPSVLSEFDRYPNAEMAFNKRVVYDEIEGSHRHHHHHNPEVVERVEVVEYERVPEVRPYGGEVIYEEYMDVETSQYNPRRNRPNGLGLQKWKTYR 142
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: C6SZM9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.136e-17
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = -2 
Query:   33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161
            TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTR+LGLIVC+G
Sbjct:   32 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRNLGLIVCRG 74

HSP 2 Score: 27.7202 bits (60), Expect = 1.136e-17
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 
Query:    2 LFARGTAVMLVSPTD 46
            +  RGTAVMLVSPTD
Sbjct:   70 IVCRGTAVMLVSPTD 84
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: B9RHF7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1524640 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.230e-17
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = -2 
Query:   33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161
            TLKGYDQLLNLVLDEAVE+LRDPDDPLKTTDQTR LGLIVC+G
Sbjct:   32 TLKGYDQLLNLVLDEAVEYLRDPDDPLKTTDQTRRLGLIVCRG 74

HSP 2 Score: 27.7202 bits (60), Expect = 4.230e-17
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 
Query:    2 LFARGTAVMLVSPTD 46
            +  RGTAVMLVSPTD
Sbjct:   70 IVCRGTAVMLVSPTD 84
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: D7T2Y2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_64.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00032062001 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.308e-17
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = -2 
Query:   33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161
            TLKGYDQLLNLVLDEAVEFLRDPDDP KTTDQTR LGLIVC+G
Sbjct:   40 TLKGYDQLLNLVLDEAVEFLRDPDDPQKTTDQTRRLGLIVCRG 82

HSP 2 Score: 27.7202 bits (60), Expect = 9.308e-17
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 
Query:    2 LFARGTAVMLVSPTD 46
            +  RGTAVMLVSPTD
Sbjct:   78 IVCRGTAVMLVSPTD 92
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: A9PBG1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_706444 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.575e-16
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = -2 
Query:   33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161
            TLKGYDQLLNLVLDEAVEFLRD DDPLKTTDQTR LGLIVC+G
Sbjct:   32 TLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRRLGLIVCRG 74

HSP 2 Score: 27.7202 bits (60), Expect = 1.575e-16
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 
Query:    2 LFARGTAVMLVSPTD 46
            +  RGTAVMLVSPTD
Sbjct:   70 IVCRGTAVMLVSPTD 84
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: Q9SI54_ARATH (At2g03870 OS=Arabidopsis thaliana GN=At2g03870 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.504e-16
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = -2 
Query:   33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161
            TLKGYDQLLNLVLDEAVEF+RD DDPLKTTDQTR LGLIVC+G
Sbjct:   32 TLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRG 74

HSP 2 Score: 27.7202 bits (60), Expect = 4.504e-16
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 
Query:    2 LFARGTAVMLVSPTD 46
            +  RGTAVMLVSPTD
Sbjct:   70 IVCRGTAVMLVSPTD 84
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: D7LQM2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_484298 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.504e-16
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = -2 
Query:   33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161
            TLKGYDQLLNLVLDEAVEF+RD DDPLKTTDQTR LGLIVC+G
Sbjct:   32 TLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRG 74

HSP 2 Score: 27.7202 bits (60), Expect = 4.504e-16
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 
Query:    2 LFARGTAVMLVSPTD 46
            +  RGTAVMLVSPTD
Sbjct:   70 IVCRGTAVMLVSPTD 84
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: D5AC71_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.184e-14
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = -2 
Query:    9 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQGNCCDACVP 161
            TLKGYDQLLNLVLDEA+EFLRD DDPLKTTDQTR LGLIVC+G       P
Sbjct:   32 TLKGYDQLLNLVLDEAIEFLRDQDDPLKTTDQTRPLGLIVCRGTAVMLVAP 82
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: D5AEC9_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.415e-13
Identity = 41/52 (78.85%), Postives = 42/52 (80.77%), Query Frame = -2 
Query:    6 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQGNCCDACVPN 161
            TLKGYDQLLNLVLDEA+EFLRD DDPLKTTDQTR LGLI    NC  AC  N
Sbjct:   32 TLKGYDQLLNLVLDEAIEFLRDQDDPLKTTDQTRPLGLI---RNCSHACCSN 80
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. TAIR peptide
Match: AT2G03870.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:1180306-1181256 FORWARD LENGTH=99)

HSP 1 Score: 81.6481 bits (200), Expect = 3.007e-18
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = -2 
Query:   33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161
            TLKGYDQLLNLVLDEAVEF+RD DDPLKTTDQTR LGLIVC+G
Sbjct:   32 TLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRG 74

HSP 2 Score: 27.7202 bits (60), Expect = 3.007e-18
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 
Query:    2 LFARGTAVMLVSPTD 46
            +  RGTAVMLVSPTD
Sbjct:   70 IVCRGTAVMLVSPTD 84
[Close]
BLAST of Pisum_sativum_v1_Contig2812 vs. TAIR peptide
Match: AT2G03870.2 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:1180306-1181256 FORWARD LENGTH=99)

HSP 1 Score: 81.6481 bits (200), Expect = 3.007e-18
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = -2 
Query:   33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161
            TLKGYDQLLNLVLDEAVEF+RD DDPLKTTDQTR LGLIVC+G
Sbjct:   32 TLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRG 74

HSP 2 Score: 27.7202 bits (60), Expect = 3.007e-18
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 
Query:    2 LFARGTAVMLVSPTD 46
            +  RGTAVMLVSPTD
Sbjct:   70 IVCRGTAVMLVSPTD 84
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2812 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
LSM7_DICDI9.765e-1062.79Probable U6 snRNA-associated Sm-like protein LSm7 ... [more]
LSM7_HUMAN1.573e-964.29U6 snRNA-associated Sm-like protein LSm7 OS=Homo s... [more]
LSM7_MOUSE2.684e-964.29U6 snRNA-associated Sm-like protein LSm7 OS=Mus mu... [more]
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BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
A3FF19_PEA4.080e-4578.99Phloem specific protein (Fragment) OS=Pisum sativu... [more]
Q41666_VICFA9.406e-4274.36Phloem specific protein OS=Vicia faba PE=2 SV=1[more]
C6SZM9_SOYBN1.136e-1795.35Putative uncharacterized protein OS=Glycine max PE... [more]
B9RHF7_RICCO4.230e-1793.02Putative uncharacterized protein OS=Ricinus commun... [more]
D7T2Y2_VITVI9.308e-1793.02Whole genome shotgun sequence of line PN40024, sca... [more]
A9PBG1_POPTR1.575e-1693.02Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q9SI54_ARATH4.504e-1690.70At2g03870 OS=Arabidopsis thaliana GN=At2g03870 PE=... [more]
D7LQM2_ARALY4.504e-1690.70Putative uncharacterized protein OS=Arabidopsis ly... [more]
D5AC71_PICSI2.184e-1478.43Putative uncharacterized protein OS=Picea sitchens... [more]
D5AEC9_PICSI1.415e-1378.85Putative uncharacterized protein OS=Picea sitchens... [more]
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BLAST of Pisum_sativum_v1_Contig2812 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G03870.13.007e-1890.70| Symbols: | Small nuclear ribonucleoprotein fami... [more]
AT2G03870.23.007e-1890.70| Symbols: | Small nuclear ribonucleoprotein fami... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 87..94
score
NoneNo IPR availableSEGsegsegcoord: 45..52
score
NoneNo IPR availableSEGsegsegcoord: 55..61
score: NAcoord: 63..82
score
NoneNo IPR availableGENE3D2.30.30.100no descriptioncoord: 6..51
score: 4.8
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 7..49
score: 1.1
NoneNo IPR availablePANTHERPTHR10553:SF1U6 SNRNA-ASSOCIATED SM-LIKE PROTEINcoord: 7..49
score: 1.1
IPR001163Like-Sm ribonucleoprotein (LSM) domainPFAMPF01423LSMcoord: 7..50
score: 4.9
IPR010920Like-Sm ribonucleoprotein (LSM)-related domainSUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..57
score: 2.7

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2812 ID=Pisum_sativum_v1_Contig2812; Name=Pisum_sativum_v1_Contig2812; organism=Pisum sativum; type=contig; length=693bp
CATCAGTTGGGGACACAAGCATCACAGCAGTTCCCCTGGCAAACAATTAA
GCCAAGACTTCTTGTCTGATCTGTAGTTTTCAGAGGATCATCAGGATCTC
TCAGAAACTCAACAGCTTCATCCAGGACAAGGTTAAGTAACTGGTCGTAT
CCTTTTAGAGTACATGCTATAGATATGATTTATTAATCATTCACACATGA
TTTATAACATAAATAACAAGAAGCTAACTAAGCAGGAATTTATTTAATTT
AATACAACCACCACACACAGTGATCATATGTTAGGGTTTAGCCTGCCTAG
CAAATTAGCCACAACACAAAGCACAAGCTTATGCTCTGTATGTTTTCCAT
TTTTGCAATCCAAGACCATTTGGCCTGTTCCTTCGTGGGTTATACTGATT
GGTTTCAACATCCATGTACTCTTCATAGATCACTTCACCACCATATGGCC
TAACCTCAGGTACTCGTTCATACTCCACCACTTCAACCCTCTCAACGATC
TCAGGGTTGTGGTGGTGGTGGTGGCGGTGGGATCCCTCGACCTCATCGTA
GACAACCCTCTTGTTGAAGGCCATTTCAGCGTTTGGGTAGCGGTCGAAGT
CCGAGAGAACACTTGGCTCCCTTCTGACTCCTGCAATGTGGTTGTGGTAG
TCCTGGGATCTCAACATTCTCTCTTTCTTTGCTTGTTTTGTAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001163Sm_dom_euk/arc
IPR010920LSM_dom_sf