Pisum_sativum_v1_Contig2812
Contig Overview
Alignments
The following features are aligned
Unigenes
This contig is part of the following unigenes:
Analyses
This contig is derived from or has results from the following analyses
Relationships
The following EST feature(s) are a part of this contig:
Homology
BLAST of Pisum_sativum_v1_Contig2812 vs. SwissProt
Match: LSM7_DICDI (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 9.765e-10 Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = -2 Query: 30 LKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQGN 158 LKGYDQL+N+ LD+ EF+RD +DPL TTD+ R LGL+VC+G+ Sbjct: 37 LKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGLVVCRGS 79 HSP 2 Score: 20.4014 bits (41), Expect = 9.765e-10 Identity = 7/12 (58.33%), Postives = 11/12 (91.67%), Query Frame = -3 Query: 2 RGTAVMLVSPTD 37 RG++VM+V PT+ Sbjct: 77 RGSSVMMVCPTE 88
BLAST of Pisum_sativum_v1_Contig2812 vs. SwissProt
Match: LSM7_HUMAN (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.573e-9 Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = -2 Query: 33 LKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 158 LKG+D LLNLVLD +E++RDPDD K T+ TR LGL+VC+G Sbjct: 37 LKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRG 78
BLAST of Pisum_sativum_v1_Contig2812 vs. SwissProt
Match: LSM7_MOUSE (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.684e-9 Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = -2 Query: 33 LKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 158 LKG+D LLNLVLD +E++RDPDD K T+ TR LGL+VC+G Sbjct: 37 LKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCRG 78
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: A3FF19_PEA (Phloem specific protein (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 4.080e-45 Identity = 94/119 (78.99%), Postives = 94/119 (78.99%), Query Frame = -3 Query: 335 TKQAKKERMLRSQDYHNHIAGVRREPSVLSDFDRYPNAEMAFNKRVVYDEVEGSXXXXXXHNXXXXXXXXXXXXXXXXXXXPYGGEVIYEEYMDVETNQYNPRRNRPNGLGLQKWKTYR 691 TKQAKKERMLRSQDYHNHIAGVRREPSVLSDFDRYPNAEMAFNKRVVYDEVEGS HN PYGGEVIYEEYMDVETNQYNPRRNRPNGLGLQKWKTYR Sbjct: 4 TKQAKKERMLRSQDYHNHIAGVRREPSVLSDFDRYPNAEMAFNKRVVYDEVEGSHRHHHHHNPEIVERVEVVEYERVPEVRPYGGEVIYEEYMDVETNQYNPRRNRPNGLGLQKWKTYR 122
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: Q41666_VICFA (Phloem specific protein OS=Vicia faba PE=2 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 9.406e-42 Identity = 87/117 (74.36%), Postives = 90/117 (76.92%), Query Frame = -3 Query: 335 QAKKERMLRSQDYHNHIAGVRREPSVLSDFDRYPNAEMAFNKRVVYDEVEGSXXXXXXHNXXXXXXXXXXXXXXXXXXXPYGGEVIYEEYMDVETNQYNPRRNRPNGLGLQKWKTYR 685 Q KERMLRSQDYHNHIAGVRREPSVLS+FDRYPNAEMAFNKRVVYDE+EGS HN PYGGEVIYEEYMDVET+QYNPRRNRPNGLGLQKWKTYR Sbjct: 26 QTNKERMLRSQDYHNHIAGVRREPSVLSEFDRYPNAEMAFNKRVVYDEIEGSHRHHHHHNPEVVERVEVVEYERVPEVRPYGGEVIYEEYMDVETSQYNPRRNRPNGLGLQKWKTYR 142
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: C6SZM9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.136e-17 Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = -2 Query: 33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTR+LGLIVC+G Sbjct: 32 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRNLGLIVCRG 74 HSP 2 Score: 27.7202 bits (60), Expect = 1.136e-17 Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 Query: 2 LFARGTAVMLVSPTD 46 + RGTAVMLVSPTD Sbjct: 70 IVCRGTAVMLVSPTD 84
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: B9RHF7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1524640 PE=4 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.230e-17 Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = -2 Query: 33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161 TLKGYDQLLNLVLDEAVE+LRDPDDPLKTTDQTR LGLIVC+G Sbjct: 32 TLKGYDQLLNLVLDEAVEYLRDPDDPLKTTDQTRRLGLIVCRG 74 HSP 2 Score: 27.7202 bits (60), Expect = 4.230e-17 Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 Query: 2 LFARGTAVMLVSPTD 46 + RGTAVMLVSPTD Sbjct: 70 IVCRGTAVMLVSPTD 84
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: D7T2Y2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_64.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00032062001 PE=4 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.308e-17 Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = -2 Query: 33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161 TLKGYDQLLNLVLDEAVEFLRDPDDP KTTDQTR LGLIVC+G Sbjct: 40 TLKGYDQLLNLVLDEAVEFLRDPDDPQKTTDQTRRLGLIVCRG 82 HSP 2 Score: 27.7202 bits (60), Expect = 9.308e-17 Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 Query: 2 LFARGTAVMLVSPTD 46 + RGTAVMLVSPTD Sbjct: 78 IVCRGTAVMLVSPTD 92
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: A9PBG1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_706444 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.575e-16 Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = -2 Query: 33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161 TLKGYDQLLNLVLDEAVEFLRD DDPLKTTDQTR LGLIVC+G Sbjct: 32 TLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRRLGLIVCRG 74 HSP 2 Score: 27.7202 bits (60), Expect = 1.575e-16 Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 Query: 2 LFARGTAVMLVSPTD 46 + RGTAVMLVSPTD Sbjct: 70 IVCRGTAVMLVSPTD 84
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: Q9SI54_ARATH (At2g03870 OS=Arabidopsis thaliana GN=At2g03870 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.504e-16 Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = -2 Query: 33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161 TLKGYDQLLNLVLDEAVEF+RD DDPLKTTDQTR LGLIVC+G Sbjct: 32 TLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRG 74 HSP 2 Score: 27.7202 bits (60), Expect = 4.504e-16 Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 Query: 2 LFARGTAVMLVSPTD 46 + RGTAVMLVSPTD Sbjct: 70 IVCRGTAVMLVSPTD 84
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: D7LQM2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_484298 PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.504e-16 Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = -2 Query: 33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161 TLKGYDQLLNLVLDEAVEF+RD DDPLKTTDQTR LGLIVC+G Sbjct: 32 TLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRG 74 HSP 2 Score: 27.7202 bits (60), Expect = 4.504e-16 Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 Query: 2 LFARGTAVMLVSPTD 46 + RGTAVMLVSPTD Sbjct: 70 IVCRGTAVMLVSPTD 84
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: D5AC71_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.184e-14 Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = -2 Query: 9 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQGNCCDACVP 161 TLKGYDQLLNLVLDEA+EFLRD DDPLKTTDQTR LGLIVC+G P Sbjct: 32 TLKGYDQLLNLVLDEAIEFLRDQDDPLKTTDQTRPLGLIVCRGTAVMLVAP 82
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Match: D5AEC9_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.415e-13 Identity = 41/52 (78.85%), Postives = 42/52 (80.77%), Query Frame = -2 Query: 6 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQGNCCDACVPN 161 TLKGYDQLLNLVLDEA+EFLRD DDPLKTTDQTR LGLI NC AC N Sbjct: 32 TLKGYDQLLNLVLDEAIEFLRDQDDPLKTTDQTRPLGLI---RNCSHACCSN 80
BLAST of Pisum_sativum_v1_Contig2812 vs. TAIR peptide
Match: AT2G03870.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:1180306-1181256 FORWARD LENGTH=99) HSP 1 Score: 81.6481 bits (200), Expect = 3.007e-18 Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = -2 Query: 33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161 TLKGYDQLLNLVLDEAVEF+RD DDPLKTTDQTR LGLIVC+G Sbjct: 32 TLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRG 74 HSP 2 Score: 27.7202 bits (60), Expect = 3.007e-18 Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 Query: 2 LFARGTAVMLVSPTD 46 + RGTAVMLVSPTD Sbjct: 70 IVCRGTAVMLVSPTD 84
BLAST of Pisum_sativum_v1_Contig2812 vs. TAIR peptide
Match: AT2G03870.2 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:1180306-1181256 FORWARD LENGTH=99) HSP 1 Score: 81.6481 bits (200), Expect = 3.007e-18 Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = -2 Query: 33 TLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCQG 161 TLKGYDQLLNLVLDEAVEF+RD DDPLKTTDQTR LGLIVC+G Sbjct: 32 TLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRG 74 HSP 2 Score: 27.7202 bits (60), Expect = 3.007e-18 Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3 Query: 2 LFARGTAVMLVSPTD 46 + RGTAVMLVSPTD Sbjct: 70 IVCRGTAVMLVSPTD 84 The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2812 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot) Total hits: 3
BLAST of Pisum_sativum_v1_Contig2812 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl) Total hits: 10
BLAST of Pisum_sativum_v1_Contig2812 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
Sequences
The
following sequences are available for this feature:
contig sequence >Pisum_sativum_v1_Contig2812 ID=Pisum_sativum_v1_Contig2812; Name=Pisum_sativum_v1_Contig2812; organism=Pisum sativum; type=contig; length=693bpback to top |