GWAS0000024 | PulseDB

Genome Location

GWAS Overview


GWAS Label	GWAS0000024 [ MapViewer ]
Published Symbol	SDWT_2_14753635
Trait Name	100-seed weight
Trait Alias	N/A
GWAS Marker	ISU_2_14753635
GWAS Study	Mung_Bean-USDA_panel-GWAS-Sandhu_2020
Genome Assembly	Vigna radiata cv. VC1973A genome v6.0
Statistical Mothod	BLUPs, Compressed linear mixed model
Experimental Model	Randomized complete block design
GWAS Panel	N/A
LOD	N/A
P Value	5.5E-13
R2	0.01
Unique key	3962-SDWT-ISU_2_14753635
Effect	0.16
MAF	0.44
Gene association	Exon
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Pulse Trait Ontology**
Term	Definition
MAIN:000117173	100-seed weight

Genome Location


Name	Type	Location	Analysis	MapViewer
chr02	chromosome	chr02:14753635..14753635	Vigna radiata cv. VC1973A genome v6.0	View

Publications


Year	Publication
2021	Sandhu, K, Singh, A. Strategies for the utilization of the USDA mung bean germplasm collection for breeding outcomes. Crop Science. 2021; 61: 422– 442. https://doi.org/10.1002/csc2.20322

Properties


Property Name	Value
Unique key	3962-SDWT-ISU_2_14753635
Published symbol	SDWT_2_14753635
Effect	0.16
MAF	0.44
Gene association	Exon
R2	0.008
P value	5.5E-13
Experimental model	Randomized complete block design
Statistical method	BLUPs, Compressed linear mixed model