GWAS0000027 | PulseDB

Genome Location

GWAS Overview


GWAS Label	GWAS0000027 [ MapViewer ]
Published Symbol	PC_2_21342003
Trait Name	Pod color
Trait Alias	N/A
GWAS Marker	ISU_2_21342003
GWAS Study	Mung_Bean-USDA_panel-GWAS-Sandhu_2020
Genome Assembly	Vigna radiata cv. VC1973A genome v6.0
Statistical Mothod	BLUPs, Compressed linear mixed model
Experimental Model	Randomized complete block design
GWAS Panel	N/A
LOD	N/A
P Value	1.75E-51
R2	0.49
Unique key	3962-PCLR-ISU_2_21342003
Effect	0.31
MAF	0.01
Gene association	Intergenic
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Pulse Trait Ontology**
Term	Definition
MAIN:000138582	Pod color

Genome Location


Name	Type	Location	Analysis	MapViewer
chr02	chromosome	chr02:21342003..21342003	Vigna radiata cv. VC1973A genome v6.0	View

Publications


Year	Publication
2021	Sandhu, K, Singh, A. Strategies for the utilization of the USDA mung bean germplasm collection for breeding outcomes. Crop Science. 2021; 61: 422– 442. https://doi.org/10.1002/csc2.20322

Properties


Property Name	Value
Unique key	3962-PCLR-ISU_2_21342003
Published symbol	PC_2_21342003
Effect	0.31
MAF	0.01
Gene association	Intergenic
R2	0.49
P value	1.75E-51
Experimental model	Randomized complete block design
Statistical method	BLUPs, Compressed linear mixed model