GWAS0000047 | PulseDB

Genome Location

GWAS Overview


GWAS Label	GWAS0000047 [ MapViewer ]
Published Symbol	DSI
Trait Name	Anthracnose disease score - stem
Trait Alias	N/A
GWAS Marker	Lalb_ Chr05_2957940
GWAS Study	Lupin-Anthracnose_resistance-Alkemade-2022
Genome Assembly	Lupinus albus cv. AMIGA genome v1.0
Statistical Mothod	Mixed Linear Model
Experimental Model	randomized complete block design
GWAS Panel	N/A
LOD	N/A
P Value	2.41E-7
R2	0.13
Unique key	4717-DSI-Lalb_ Chr05_2957940
MAF	0.07
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Pulse Trait Ontology**
Term	Definition
156:Anthracnose disease score - stem	Anthracnose disease score - stem

Genome Location


Name	Type	Location	Analysis	MapViewer
Lalb_Chr05	supercontig	Lalb_Chr05:2957940..2957940	Lupinus albus cv. AMIGA genome v1.0	View

Publications


Year	Publication
2022	Alkemade JA, Nazzicari N, Messmer MM, Annicchiarico P, Ferrari B, Voegele RT, Finckh MR, Arncken C, Hohmann P. Genome-wide association study reveals white lupin candidate gene involved in anthracnose resistance.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2022 Jan 05.

Properties


Property Name	Value
Unique key	4717-DSI-Lalb_ Chr05_2957940
Published symbol	DSI
MAF	0.07
R2	0.13
P value	2.41E-7
Experimental model	randomized complete block design
Statistical method	Mixed Linear Model