GR398757

EST Overview


Name	GR398757
Unique Name	GR398757
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	268

Libraries


Library Name	Type
LIBEST_024782 ICC4958 field drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR398757 vs. SwissProt
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.797e-35
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QWYKFDDERVTKED KRALEEQYGGEEELPQ NPGFNN PFKFTKYSNAYMLVYIR++DK+KIICNVDEKDIA
Sbjct:  466 QWYKFDDERVTKEDVKRALEEQYGGEEELPQNNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 538

[Close]

BLAST of GR398757 vs. SwissProt
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.758e-34
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNT-PFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QWYKFDDERVTKED KRALEEQYGGEEELPQTNPGFNN  PFKFTKYSNAYMLVYIR++DK+KIICNVDEKDIA
Sbjct:  467 QWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 540

[Close]

BLAST of GR398757 vs. SwissProt
Match: UBP21_SCHPO (Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces pombe GN=ubp21 PE=2 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 1.878e-9
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = -2

Query:   52 WYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDI 264
            W+KFDD+RVT+   K  LE+ YGGE        G+N  PFK  ++ NAYMLVY R +  + I+  V  +D+
Sbjct:  494 WFKFDDDRVTRATIKEVLEDNYGGEP--AGRAKGYNGNPFK--RFMNAYMLVYFRKSRLDHILSPVTAEDV 560

[Close]

BLAST of GR398757 vs. TrEMBL
Match: B0BLB2_LOTJA (CM0545.290.nc protein OS=Lotus japonicus GN=CM0545.290.nc PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.050e-35
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QWYKFDDERVTKED KRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIR+ DK+K+ICNVDEKDIA
Sbjct:  467 QWYKFDDERVTKEDTKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIREADKDKVICNVDEKDIA 539

[Close]

BLAST of GR398757 vs. TrEMBL
Match: A9SVA0_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_216093 PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.050e-35
Identity = 67/73 (91.78%), Postives = 72/73 (98.63%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QW+KFDDERVTKE+PKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIR+ DK+KI+CNVDEKDIA
Sbjct:  463 QWFKFDDERVTKEEPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIREADKDKIVCNVDEKDIA 535

[Close]

BLAST of GR398757 vs. TrEMBL
Match: D7U8M2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_32.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00022498001 PE=4 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.373e-34
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QW+KFDDERVTKED +RALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIR++DKEKIICNVDEKDIA
Sbjct:  466 QWFKFDDERVTKEDTRRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKEKIICNVDEKDIA 538

[Close]

BLAST of GR398757 vs. TrEMBL
Match: B9IIF3_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_256091 PE=4 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.793e-34
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QW+KFDDERVTKED KRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIR++DK+KIICNVDEKDIA
Sbjct:  465 QWFKFDDERVTKEDVKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 537

[Close]

BLAST of GR398757 vs. TrEMBL
Match: B9H9P5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_561195 PE=4 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.793e-34
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QW+KFDDERVTKED KRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIR++DK+KIICNVDEKDIA
Sbjct:  483 QWFKFDDERVTKEDMKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 555

[Close]

BLAST of GR398757 vs. TrEMBL
Match: D7T3A6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_73.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00034603001 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.059e-34
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QW+KFDDERVTKED KRALEEQYGGEEELPQTNPGFNN+PFKFTKYSNAYMLVYIR++DKEKIICNVDEKDIA
Sbjct:  464 QWFKFDDERVTKEDIKRALEEQYGGEEELPQTNPGFNNSPFKFTKYSNAYMLVYIRESDKEKIICNVDEKDIA 536

[Close]

BLAST of GR398757 vs. TrEMBL
Match: D7T1M3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_9.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00037528001 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.059e-34
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QWYKFDDERVTKED KRALEEQYGGEEELPQTNPG NNTPFKFTKYSNAYMLVYIR++DK+KIICNVDEKDIA
Sbjct:  465 QWYKFDDERVTKEDVKRALEEQYGGEEELPQTNPGLNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 537

[Close]

BLAST of GR398757 vs. TrEMBL
Match: B9HVH8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_822682 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.059e-34
Identity = 67/73 (91.78%), Postives = 72/73 (98.63%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QW+KFDDERVTKED KRALEEQYGGEEELPQTNPGFNN+PFKFTKYSNAYMLVYIR++DKEK+ICNVDEKDIA
Sbjct:  465 QWFKFDDERVTKEDVKRALEEQYGGEEELPQTNPGFNNSPFKFTKYSNAYMLVYIRESDKEKVICNVDEKDIA 537

[Close]

BLAST of GR398757 vs. TrEMBL
Match: B9HKI3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_820184 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.059e-34
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QW+KFDDERVTKED KRALEEQYGGEEELPQTNPGFNN+PFKFTKYSNAYMLVYIR++DKEKIICNVDEKDIA
Sbjct:  465 QWFKFDDERVTKEDIKRALEEQYGGEEELPQTNPGFNNSPFKFTKYSNAYMLVYIRESDKEKIICNVDEKDIA 537

[Close]

BLAST of GR398757 vs. TrEMBL
Match: D7LZS2_ARALY (Ubiquitin-specific protease 12 OS=Arabidopsis lyrata subsp. lyrata GN=UBP12 PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.995e-34
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QWYKFDDERVTKED KRALEEQYGGEEELPQTNPGFNN PFKFTKYSNAYMLVYIR++DK+KIICNVDEKDIA
Sbjct:  467 QWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 539

[Close]

BLAST of GR398757 vs. TAIR peptide
Match: AT3G11910.2 (| Symbols: UBP13 | ubiquitin-specific protease 13 | chr3:3761758-3770290 REVERSE LENGTH=1114)

HSP 1 Score: 145.976 bits (367), Expect = 4.538e-36
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QWYKFDDERVTKED KRALEEQYGGEEELPQ NPGFNN PFKFTKYSNAYMLVYIR++DK+KIICNVDEKDIA
Sbjct:  465 QWYKFDDERVTKEDVKRALEEQYGGEEELPQNNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 537

[Close]

BLAST of GR398757 vs. TAIR peptide
Match: AT3G11910.1 (| Symbols: UBP13 | ubiquitin-specific protease 13 | chr3:3761758-3770290 REVERSE LENGTH=1115)

HSP 1 Score: 145.976 bits (367), Expect = 4.538e-36
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QWYKFDDERVTKED KRALEEQYGGEEELPQ NPGFNN PFKFTKYSNAYMLVYIR++DK+KIICNVDEKDIA
Sbjct:  466 QWYKFDDERVTKEDVKRALEEQYGGEEELPQNNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 538

[Close]

BLAST of GR398757 vs. TAIR peptide
Match: AT5G06600.3 (| Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2020682-2027834 REVERSE LENGTH=985)

HSP 1 Score: 143.28 bits (360), Expect = 2.941e-35
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNT-PFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QWYKFDDERVTKED KRALEEQYGGEEELPQTNPGFNN  PFKFTKYSNAYMLVYIR++DK+KIICNVDEKDIA
Sbjct:  467 QWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 540

[Close]

BLAST of GR398757 vs. TAIR peptide
Match: AT5G06600.2 (| Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2019545-2027834 REVERSE LENGTH=1115)

HSP 1 Score: 143.28 bits (360), Expect = 2.941e-35
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNT-PFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QWYKFDDERVTKED KRALEEQYGGEEELPQTNPGFNN  PFKFTKYSNAYMLVYIR++DK+KIICNVDEKDIA
Sbjct:  466 QWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 539

[Close]

BLAST of GR398757 vs. TAIR peptide
Match: AT5G06600.1 (| Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2019545-2027834 REVERSE LENGTH=1116)

HSP 1 Score: 143.28 bits (360), Expect = 2.941e-35
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = -2

Query:   49 QWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNT-PFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIA 267
            QWYKFDDERVTKED KRALEEQYGGEEELPQTNPGFNN  PFKFTKYSNAYMLVYIR++DK+KIICNVDEKDIA
Sbjct:  467 QWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 540

The following BLAST results are available for this feature:

BLAST of GR398757 vs. SwissProt
BLAST of GR398757 vs. TrEMBL
BLAST of GR398757 vs. TAIR peptide

BLAST of GR398757 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 3


Match Name	E-value	Identity	Description
UBP13_ARATH	5.797e-35	91.78	Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid...	[more]
UBP12_ARATH	3.758e-34	91.89	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid...	[more]
UBP21_SCHPO	1.878e-9	43.66	Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizo...	[more]

BLAST of GR398757 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B0BLB2_LOTJA	8.050e-35	93.15	CM0545.290.nc protein OS=Lotus japonicus GN=CM0545...	[more]
A9SVA0_PHYPA	8.050e-35	91.78	Predicted protein OS=Physcomitrella patens subsp. ...	[more]
D7U8M2_VITVI	1.373e-34	93.15	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9IIF3_POPTR	1.793e-34	93.15	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
B9H9P5_POPTR	1.793e-34	93.15	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7T3A6_VITVI	3.059e-34	93.15	Whole genome shotgun sequence of line PN40024, sca...	[more]
D7T1M3_VITVI	3.059e-34	93.15	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9HVH8_POPTR	3.059e-34	91.78	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9HKI3_POPTR	3.059e-34	93.15	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7LZS2_ARALY	3.995e-34	93.15	Ubiquitin-specific protease 12 OS=Arabidopsis lyra...	[more]

BLAST of GR398757 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G11910.2	4.538e-36	91.78	\| Symbols: UBP13 \| ubiquitin-specific protease 13 ...	[more]
AT3G11910.1	4.538e-36	91.78	\| Symbols: UBP13 \| ubiquitin-specific protease 13 ...	[more]
AT5G06600.3	2.941e-35	91.89	\| Symbols: UBP12 \| ubiquitin-specific protease 12 ...	[more]
AT5G06600.2	2.941e-35	91.89	\| Symbols: UBP12 \| ubiquitin-specific protease 12 ...	[more]
AT5G06600.1	2.941e-35	91.89	\| Symbols: UBP12 \| ubiquitin-specific protease 12 ...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 74..89 score
None	No IPR available	SUPERFAMILY	54001	Cysteine proteinases	coord: 1..89 score: 1.3

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR398757 ID=GR398757; Name=GR398757; organism=Cicer arietinum; type=EST; length=268bp
GTGCTCTTTTTCTTCCTGTTCTTTCTTCAACCTCTCCCTTAAATGCTCTG
CAATGTCTTTCTCATCCACATTGCATATTATTTTTTCCTTGTCAGTGTCA
CGTATATACACCAGCATATAAGCATTTGAATATTTGGTGAATTTAAAAGG
AGTGTTATTGAATCCAGGATTTGTCTGCGGTAACTCTTCCTCACCACCAT
ATTGCTCCTCTAATGCCCGTTTAGGGTCTTCTTTTGTCACCCTCTCATCA
TCAAATTTGTACCACTGA

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