GR392387

EST Overview
NameGR392387
Unique NameGR392387
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length331
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of GR392387 vs. TrEMBL
Match: C6THW5_SOYBN (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Glycine max PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.543e-12
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   93 MLRVAAKKXXXXXXXXXWRANYAASAFLSKNPIAPTSSSDERRSDPFSIQPEFFLPFRGFASESLIRSKENSIIPDIPA 329
            MLRVAA++         WR N+AASA++S+N +      D+RRSDP S  P F  PFRGFA+ESLI   ENSIIP+IPA
Sbjct:    1 MLRVAARRLSSLSSSSPWRPNHAASAYVSRNAVV-----DDRRSDPSS-HPLF--PFRGFATESLIHPIENSIIPEIPA 71          
BLAST of GR392387 vs. TrEMBL
Match: C6TM59_SOYBN (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Glycine max PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.977e-9
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 3
Query:   93 MLRVAAKKXXXXXXXXX-WRANYAASAFLSKNPIAPTSSSDERRSDPFSIQPEFFLPFRGFASESLIRSKENSIIPDIP 326
            MLRVAA++           R N+AASAFLS+N +A     D+RRS P S      LPFRG+A+ESLI +KENSI P+IP
Sbjct:    1 MLRVAARRLSSSLSSSSPLRPNHAASAFLSRNDVAV----DDRRSAPSSHP---LLPFRGYATESLIHTKENSITPEIP 72          
BLAST of GR392387 vs. TrEMBL
Match: C6TIG2_SOYBN (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Glycine max PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.608e-8
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 3
Query:   93 MLRVAAKKXXXXXXXXXWRANYAASAFLSKNPIAPTSSSDERRSDPFSIQPEFFLPFRGFASESLIRSKENSIIPDI 323
            MLRVAA++          R N+AASAFLS+N +      D+ RS P S      LPFRGFA+ESLI   ENSIIP I
Sbjct:    1 MLRVAARRLSSLSSSSPLRPNHAASAFLSRNDVVV----DDHRSVPSSHP---LLPFRGFATESLIHPIENSIIPQI 70          
BLAST of GR392387 vs. TrEMBL
Match: B9RGW9_RICCO (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Ricinus communis GN=RCOM_1445040 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.472e-7
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 3
Query:   93 MLRVAAKKXXXXXXXXX-WRANYAA-SAFLSKNPI--APTSSSDERRS----DPFSIQPEFFLPFRGFASESLIRSKENSIIPDIPA 329
            MLRVAA++          WR N AA SA  S+NPI    +SSSD+ +S    D F+ +P+F +P RGF+S+SL+   E+ I+ ++PA
Sbjct:    1 MLRVAARRLSSLCSTQPSWRPNQAATSAIASRNPINGGDSSSSDDVKSKVLNDYFAFRPQFHIPHRGFSSDSLMPKNEDGIVSEVPA 87          
The following BLAST results are available for this feature:
BLAST of GR392387 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 4
Match NameE-valueIdentityDescription
C6THW5_SOYBN7.543e-1254.43Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
C6TM59_SOYBN5.977e-951.90Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
C6TIG2_SOYBN6.608e-850.65Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
B9RGW9_RICCO1.472e-742.53Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 18..37
score
NoneNo IPR availableSEGsegsegcoord: 39..47
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR392387 ID=GR392387; Name=GR392387; organism=Cicer arietinum; type=EST; length=331bp
TTTTTTCCCCCTTTTCCGAGTCTCATTCGTTTTGTTTTGTGTACCACAAA
CTCTCAAAGAAATCGCAGAAAGAGAACAACGAAGAAGGAGAAATGTTGAG
GGTTGCAGCTAAGAAGCTTTCTTCTCTCTCCTCATCTCAATCATGGAGGG
CTAACTACGCCGCCTCCGCTTTCCTCTCTAAGAACCCTATCGCACCGACT
TCTTCATCCGATGAACGTAGATCTGATCCCTTTTCGATCCAACCTGAATT
CTTTCTCCCCTTCAGAGGTTTTGCTTCTGAATCACTGATCCGCTCCAAAG
AAAACAGCATTATTCCTGATATCCCCGCAAC
back to top