GR408113

EST Overview


Name	GR408113
Unique Name	GR408113
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	271

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR408113 vs. SwissProt
Match: YCYB_SCHPO (UPF0041 protein C1235.11 OS=Schizosaccharomyces pombe GN=SPCC1235.11 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.385e-12
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTR----WAKAEG 160
            ISG MTGA+ +YS++FMR+AWMV PRNYLLL CHA N TVQ  Q  R    W   EG
Sbjct:   61 ISGRMTGALILYSSVFMRYAWMVSPRNYLLLGCHAFNTTVQTAQGIRFVNFWYGKEG 117

[Close]

BLAST of GR408113 vs. SwissProt
Match: BR44L_HUMAN (Brain protein 44-like protein OS=Homo sapiens GN=BRP44L PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.000e-11
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAE 157
            ISG MT A+C YS  FMRFA+ VQPRN+LL ACHA+NE  QL Q  R  K E
Sbjct:   51 ISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIKHE 102

[Close]

BLAST of GR408113 vs. SwissProt
Match: BR44L_BOVIN (Brain protein 44-like protein OS=Bos taurus GN=BRP44L PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.455e-11
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAE 157
            ISG MT A+C YS  FMRFA+ VQPRN+LL ACHA+NE  QL Q  R  + E
Sbjct:   51 ISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHE 102

[Close]

BLAST of GR408113 vs. SwissProt
Match: BR44L_RAT (Brain protein 44-like protein OS=Rattus norvegicus GN=Brp44l PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.211e-10
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTR 142
            ISG MT A+C YS  FMRFA+ VQPRN+LL ACH +NE  QL Q  R
Sbjct:   51 ISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGR 97

[Close]

BLAST of GR408113 vs. SwissProt
Match: BR44L_MOUSE (Brain protein 44-like protein OS=Mus musculus GN=Brp44l PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.211e-10
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTR 142
            ISG MT A+C YS  FMRFA+ VQPRN+LL ACH +NE  QL Q  R
Sbjct:   51 ISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHVTNEVAQLIQGGR 97

[Close]

BLAST of GR408113 vs. SwissProt
Match: FMP37_YEAST (UPF0041 protein FMP37 OS=Saccharomyces cerevisiae GN=FMP37 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.169e-9
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEGYLSGKKEKAPSSE 199
            ISG MT A+  YS +FM++A  V P+NYLL  CH  NET QL Q  R+ K   + + +++KA   E
Sbjct:   55 ISGPMTFALVTYSGVFMKYALSVSPKNYLLFGCHLINETAQLAQGYRFLKYTYFTTDEEKKALDKE 120

[Close]

BLAST of GR408113 vs. SwissProt
Match: YNFD_CAEEL (UPF0041 protein R07E5.13 OS=Caenorhabditis elegans GN=R07E5.13 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 7.112e-9
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQ 124
            ISG MT A+ IYS++FMRFAW VQPRN LL ACH +N + Q
Sbjct:   53 ISGPMTSALLIYSSVFMRFAWHVQPRNLLLFACHFANFSAQ 93

[Close]

BLAST of GR408113 vs. SwissProt
Match: BR44M_BOVIN (Brain protein 44-like protein 2 OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 6.021e-8
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRW 145
            ISG MT A+  YS  FMRFA+ VQPRN LL+ACH +N   Q  Q  R+
Sbjct:   53 ISGRMTTALIFYSMAFMRFAYRVQPRNLLLMACHGTNIVAQSMQAGRY 100

[Close]

BLAST of GR408113 vs. TrEMBL
Match: Q949R9_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana GN=At5g20090 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.825e-25
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEGYLSGKKEKAPSSE 199
            ISGNM+ AMC+YSALFMRFAWMVQPRNYLLLACHASNETVQLYQ +RWA+A+GYLS KKE+   S+
Sbjct:   45 ISGNMSSAMCVYSALFMRFAWMVQPRNYLLLACHASNETVQLYQLSRWARAQGYLSSKKEEEKPSQ 110

[Close]

BLAST of GR408113 vs. TrEMBL
Match: D7LZF0_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_488911 PE=4 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.825e-25
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEGYLSGKKEKAPSSE 199
            ISGNM+ AMC+YSALFMRFAWMVQPRNYLLLACHASNETVQLYQ +RWA+A+GYLS KKE+   S+
Sbjct:   45 ISGNMSSAMCVYSALFMRFAWMVQPRNYLLLACHASNETVQLYQLSRWARAQGYLSSKKEEEKPSQ 110

[Close]

BLAST of GR408113 vs. TrEMBL
Match: A5AH05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007924 PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.283e-24
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEGYLSGKKEKAPSS 196
            ISGNMT AMC+YSALFMRFAWMVQPRNYLLLACHASNETVQLYQ +RWAK +GYL  KK++A S+
Sbjct:   43 ISGNMTAAMCVYSALFMRFAWMVQPRNYLLLACHASNETVQLYQLSRWAKGQGYLQEKKDEAASN 107

[Close]

BLAST of GR408113 vs. TrEMBL
Match: B9I3N6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_814286 PE=4 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.734e-24
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEGYLSGKKEKAPSSE 199
            ISGNMTGAMC+YSALFMRFAWMVQPRNYLLL CHASNETVQLYQ +RWA+ +GYLS +K++   S+
Sbjct:   44 ISGNMTGAMCVYSALFMRFAWMVQPRNYLLLVCHASNETVQLYQFSRWARGQGYLSPEKKEEAKSQ 109

[Close]

BLAST of GR408113 vs. TrEMBL
Match: C6T1U5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.369e-24
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEGYLSGKKEKAPS 193
            ISGNMTGAMC+YSALFMRFAWMVQPRNY L ACHASNETVQLY  +RWAKA+G LS KKE+A S
Sbjct:   43 ISGNMTGAMCVYSALFMRFAWMVQPRNYPLFACHASNETVQLYHFSRWAKAQGLLSEKKEEASS 106

[Close]

BLAST of GR408113 vs. TrEMBL
Match: A9NZ92_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.391e-23
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEGYLSGKKE 181
            ISGNMTGAMC+YS LFMRFAWMVQPRNYLLLACHASNETVQLYQ +RWA A GYL  K+E
Sbjct:   43 ISGNMTGAMCVYSGLFMRFAWMVQPRNYLLLACHASNETVQLYQLSRWASAYGYLPKKEE 102

[Close]

BLAST of GR408113 vs. TrEMBL
Match: Q6H4I2_ORYSJ (Brain protein 44-like OS=Oryza sativa subsp. japonica GN=P0599F09.17 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.201e-22
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEGYLSGKKEKA 187
            ISGNMT AMC+YS LFMRFAWMVQPRNYLLLACHASNE+VQLYQ +RWA+A+GYL  K+ +A
Sbjct:   44 ISGNMTAAMCVYSGLFMRFAWMVQPRNYLLLACHASNESVQLYQMSRWARAQGYLEKKEPEA 105

[Close]

BLAST of GR408113 vs. TrEMBL
Match: B8BEY3_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_31133 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.201e-22
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEGYLSGKKEKA 187
            ISGNMT AMC+YS LFMRFAWMVQPRNYLLLACHASNE+VQLYQ +RWA+A+GYL  K+ +A
Sbjct:   44 ISGNMTAAMCVYSGLFMRFAWMVQPRNYLLLACHASNESVQLYQMSRWARAQGYLEKKEPEA 105

[Close]

BLAST of GR408113 vs. TrEMBL
Match: Q6Z565_ORYSJ (Brain protein 44-like OS=Oryza sativa subsp. japonica GN=OSJNBa0007M04.17 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.569e-22
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEGYLSGKK 178
            ISGNMT AMC+YS LFMRFAWMVQPRNYLLLACHASNE+VQLYQ +RWA+A+GYL  K+
Sbjct:   44 ISGNMTAAMCVYSGLFMRFAWMVQPRNYLLLACHASNESVQLYQFSRWARAQGYLENKE 102

[Close]

BLAST of GR408113 vs. TrEMBL
Match: C5XBD1_SORBI (Putative uncharacterized protein Sb02g023450 OS=Sorghum bicolor GN=Sb02g023450 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.569e-22
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEGYLSGKKEKA 187
            ISGNMT AMC+YS LFMRFAWMVQPRNYLLLACHASNE+VQLYQ +RWA+A+GYL  K+ +A
Sbjct:   44 ISGNMTAAMCVYSGLFMRFAWMVQPRNYLLLACHASNESVQLYQLSRWARAQGYLEKKEPEA 105

[Close]

BLAST of GR408113 vs. TAIR peptide
Match: AT5G20090.2 (| Symbols: | Uncharacterised protein family (UPF0041) | chr5:6787246-6788000 REVERSE LENGTH=110)

HSP 1 Score: 116.316 bits (290), Expect = 3.840e-27
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEGYLSGKKEKAPSSE 199
            ISGNM+ AMC+YSALFMRFAWMVQPRNYLLLACHASNETVQLYQ +RWA+A+GYLS KKE+   S+
Sbjct:   45 ISGNMSSAMCVYSALFMRFAWMVQPRNYLLLACHASNETVQLYQLSRWARAQGYLSSKKEEEKPSQ 110

[Close]

BLAST of GR408113 vs. TAIR peptide
Match: AT5G20090.1 (| Symbols: | Uncharacterised protein family (UPF0041) | chr5:6787246-6788000 REVERSE LENGTH=110)

HSP 1 Score: 116.316 bits (290), Expect = 3.840e-27
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEGYLSGKKEKAPSSE 199
            ISGNM+ AMC+YSALFMRFAWMVQPRNYLLLACHASNETVQLYQ +RWA+A+GYLS KKE+   S+
Sbjct:   45 ISGNMSSAMCVYSALFMRFAWMVQPRNYLLLACHASNETVQLYQLSRWARAQGYLSSKKEEEKPSQ 110

[Close]

BLAST of GR408113 vs. TAIR peptide
Match: AT5G20090.3 (| Symbols: | Uncharacterised protein family (UPF0041) | chr5:6787543-6788000 REVERSE LENGTH=97)

HSP 1 Score: 103.219 bits (256), Expect = 3.364e-23
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 2

Query:    2 ISGNMTGAMCIYSALFMRFAWMVQPRNYLLLACHASNETVQLYQHTRWAKAEG 160
            ISGNM+ AMC+YSALFMRFAWMVQPRNYLLLACHASNETVQLYQ +RWA+A+G
Sbjct:   45 ISGNMSSAMCVYSALFMRFAWMVQPRNYLLLACHASNETVQLYQLSRWARAQG 97

The following BLAST results are available for this feature:

BLAST of GR408113 vs. SwissProt
BLAST of GR408113 vs. TrEMBL
BLAST of GR408113 vs. TAIR peptide

BLAST of GR408113 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 8


Match Name	E-value	Identity	Description
YCYB_SCHPO	1.385e-12	61.40	UPF0041 protein C1235.11 OS=Schizosaccharomyces po...	[more]
BR44L_HUMAN	2.000e-11	63.46	Brain protein 44-like protein OS=Homo sapiens GN=B...	[more]
BR44L_BOVIN	4.455e-11	61.54	Brain protein 44-like protein OS=Bos taurus GN=BRP...	[more]
BR44L_RAT	2.211e-10	63.83	Brain protein 44-like protein OS=Rattus norvegicus...	[more]
BR44L_MOUSE	2.211e-10	63.83	Brain protein 44-like protein OS=Mus musculus GN=B...	[more]
FMP37_YEAST	4.169e-9	45.45	UPF0041 protein FMP37 OS=Saccharomyces cerevisiae ...	[more]
YNFD_CAEEL	7.112e-9	65.85	UPF0041 protein R07E5.13 OS=Caenorhabditis elegans...	[more]
BR44M_BOVIN	6.021e-8	56.25	Brain protein 44-like protein 2 OS=Bos taurus PE=2...	[more]

BLAST of GR408113 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q949R9_ARATH	9.825e-25	80.30	Putative uncharacterized protein OS=Arabidopsis th...	[more]
D7LZF0_ARALY	9.825e-25	80.30	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
A5AH05_VITVI	1.283e-24	81.54	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9I3N6_POPTR	3.734e-24	77.27	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
C6T1U5_SOYBN	6.369e-24	82.81	Putative uncharacterized protein OS=Glycine max PE...	[more]
A9NZ92_PICSI	5.391e-23	85.00	Putative uncharacterized protein OS=Picea sitchens...	[more]
Q6H4I2_ORYSJ	1.201e-22	79.03	Brain protein 44-like OS=Oryza sativa subsp. japon...	[more]
B8BEY3_ORYSI	1.201e-22	79.03	Putative uncharacterized protein OS=Oryza sativa s...	[more]
Q6Z565_ORYSJ	1.569e-22	81.36	Brain protein 44-like OS=Oryza sativa subsp. japon...	[more]
C5XBD1_SORBI	1.569e-22	79.03	Putative uncharacterized protein Sb02g023450 OS=So...	[more]

BLAST of GR408113 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G20090.2	3.840e-27	80.30	\| Symbols: \| Uncharacterised protein family (UPF0...	[more]
AT5G20090.1	3.840e-27	80.30	\| Symbols: \| Uncharacterised protein family (UPF0...	[more]
AT5G20090.3	3.364e-23	86.79	\| Symbols: \| Uncharacterised protein family (UPF0...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005336	Uncharacterised protein family UPF0041	PFAM	PF03650	UPF0041	coord: 1..51 score: 1.3
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..50 score: 6.5
None	No IPR available	PANTHER	PTHR14154:SF3	BRAIN PROTEIN 44-LIKE	coord: 1..50 score: 6.5

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR408113 ID=GR408113; Name=GR408113; organism=Cicer arietinum; type=EST; length=271bp
GATTTCTGGCAACATGACAGGAGCAATGTGTATTTATTCAGCATTGTTCA
TGAGATTTGCGTGGATGGTACAGCCACGAAACTATTTACTTCTTGCATGT
CATGCTTCAAATGAGACTGTTCAGCTCTATCAACATACCCGATGGGCTAA
GGCAGAAGGGTATCTCTCGGGGAAGAAGGAGAAAGCTCCATCAAGTGAAT
GAAGTTTTTTGAAAAGATCGTGTTTGAACTTGTCGATGTATGAATAATTG
ATTGATAGAATTGATTGTAAG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR005336	MPC

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