GR420887

EST Overview


Name	GR420887
Unique Name	GR420887
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	511

Libraries


Library Name	Type
LIBEST_024785 ICCV2 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR420887 vs. SwissProt
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.012e-39
Identity = 85/131 (64.89%), Postives = 94/131 (71.76%), Query Frame = -1

Query:  101 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLA---FGVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINILIP 484
            KAQEWAA+PGGQATYLG PVPWGTLPTIL   +    FVEHQRSMEKD +        FDPLG      KF + K+KE+KNGRLALLA   F VQQSAY    GTGPLENL THL DPWHNNIG  +++IP
Sbjct:  115 KAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYL---GTGPLENLATHLADPWHNNIG--DVIIP 240

[Close]

BLAST of GR420887 vs. SwissProt
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.238e-38
Identity = 82/128 (64.06%), Postives = 90/128 (70.31%), Query Frame = -1

Query:  110 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLA---FGVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINI 484
            KAQEWAA+P GQATYLGNPVPWG LPTIL   +    F E QR+MEKDP+        FDPLG      KF + K+KE+KNGRLA+LA   F VQQSAY   PGTGPLENL THL DPWHNNIG I I
Sbjct:  114 KAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAY---PGTGPLENLATHLADPWHNNIGDIVI 238

[Close]

BLAST of GR420887 vs. SwissProt
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.573e-8
Identity = 41/112 (36.61%), Postives = 59/112 (52.68%), Query Frame = -1

Query:  125 ATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDT-LVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLAF---GVQQSAYWNIPGTGPLENLGTHLGDPWHNNI 448
            ++YLG P+P+     I +       ++E QR+ E D +  L    + FDPLG     +K  Q ++ E+K+ RLA++AF    VQ +A     G GPL N  THL DP H  I
Sbjct:  177 SSYLGQPLPFSISTLIWIEVLVI-GYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA----TGKGPLNNWATHLSDPLHTTI 283

[Close]

BLAST of GR420887 vs. SwissProt
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.683e-8
Identity = 41/112 (36.61%), Postives = 58/112 (51.79%), Query Frame = -1

Query:  125 ATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDT-LVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLAL---LAFGVQQSAYWNIPGTGPLENLGTHLGDPWHNNI 448
            ++YLG P+P+     I +       ++E QR+ E D +  L    + FDPLG  +   K  Q ++ E+K+ RLA+   L F VQ +A     G GPL N  THL DP H  I
Sbjct:  174 SSYLGQPLPFSISTLIWIEVLVI-GYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAA----TGKGPLNNWATHLSDPLHTTI 280

[Close]

BLAST of GR420887 vs. SwissProt
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 3.504e-8
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = -1

Query:  128 TFDPLGP*NTLKKFHQYKIKEVKNGRLALLA-FGVQQSAYWNIPGTGPLENLGTHLGDPWHNN 313
            +FDPLG  +  + F + K+KE+KNGRLA+ + FG    A   + G GPLENL  HL DP +NN
Sbjct:  192 SFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAI--VTGKGPLENLADHLADPVNNN 252

[Close]

BLAST of GR420887 vs. SwissProt
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.976e-8
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = -1

Query:  128 TFDPLGP*NTLKKFHQYKIKEVKNGRLALLA-FGVQQSAYWNIPGTGPLENLGTHLGDPWHNN 313
            +FDPLG  +  + F + K+KE+KNGRLA+ + FG    A   + G GPLENL  HL DP +NN
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI--VTGKGPLENLADHLADPVNNN 255

[Close]

BLAST of GR420887 vs. SwissProt
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.976e-8
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = -1

Query:  128 TFDPLGP*NTLKKFHQYKIKEVKNGRLALLA-FGVQQSAYWNIPGTGPLENLGTHLGDPWHNN 313
            +FDPLG  +  + F + K+KE+KNGRLA+ + FG    A   + G GPLENL  HL DP +NN
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI--VTGKGPLENLADHLADPVNNN 255

[Close]

BLAST of GR420887 vs. SwissProt
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.976e-8
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = -1

Query:  128 TFDPLGP*NTLKKFHQYKIKEVKNGRLALLA-FGVQQSAYWNIPGTGPLENLGTHLGDPWHNN 313
            TFDPLG  +  + F   K+KE+KNGRLA+ + FG    A   + G GPLENL  HL DP +NN
Sbjct:  193 TFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAI--VTGKGPLENLADHLADPVNNN 253

[Close]

BLAST of GR420887 vs. SwissProt
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.976e-8
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = -1

Query:  128 TFDPLGP*NTLKKFHQYKIKEVKNGRLALLA-FGVQQSAYWNIPGTGPLENLGTHLGDPWHNN 313
            +FDPLG  +  + F + K+KE+KNGRLA+ + FG    A   + G GPLENL  HL DP +NN
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI--VTGKGPLENLADHLADPVNNN 255

[Close]

BLAST of GR420887 vs. SwissProt
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.976e-8
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = -1

Query:  128 TFDPLGP*NTLKKFHQYKIKEVKNGRLALLA-FGVQQSAYWNIPGTGPLENLGTHLGDPWHNN 313
            +FDPLG  +  + F + K+KE+KNGRLA+ + FG    A   + G GPLENL  HL DP +NN
Sbjct:  194 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI--VTGKGPLENLADHLADPVNNN 254

[Close]

BLAST of GR420887 vs. TrEMBL
Match: B7FH03_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.465e-44
Identity = 99/157 (63.06%), Postives = 108/157 (68.79%), Query Frame = -1

Query:   29 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLAF---GVQQSAYWNIPGTGPLENLGTHLGDPWHNNIG--TINILIPPTSKFINLFFSYIRKLHPATCLCH 484
            KAQEWAA+PGGQATYLGNPVPWGTLPTILV  +    FVEHQRSMEKDP+        FDPLG     KKFH+YKIKEVKNGRLALLAF    VQQ+AY   PGTGPLENL THL DPWHNNIG    +  I  + K I +  +   K  P T  CH
Sbjct:  115 KAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQTAY---PGTGPLENLATHLADPWHNNIGKCPYSTTIDISLKSIFVILAATCKTPPNTLFCH 268

[Close]

BLAST of GR420887 vs. TrEMBL
Match: B9T4T2_RICCO (Chlorophyll A/B binding protein, putative OS=Ricinus communis GN=RCOM_0333020 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.901e-42
Identity = 93/134 (69.40%), Postives = 99/134 (73.88%), Query Frame = -1

Query:   92 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLAF---GVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINILIPPTS 484
            KAQEWAA+PGGQATYLG PVPWGTLPTILV  +    FVEHQRSMEKDP+        FDPLG      KFH+YK+KE+KNGRLALLAF    VQQSAY   PGTGPLENL THL DPWHNNIG I   I PTS
Sbjct:  114 KAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPAKFHEYKVKEIKNGRLALLAFVGICVQQSAY---PGTGPLENLATHLADPWHNNIGDI---IIPTS 241

[Close]

BLAST of GR420887 vs. TrEMBL
Match: C6SXH7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.436e-42
Identity = 91/131 (69.47%), Postives = 98/131 (74.81%), Query Frame = -1

Query:  101 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLA---FGVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINILIP 484
            KAQEWAAVPGGQATYLGNPVPWGTLPTIL   +   +FVEHQRSM KDP+        FDPLG     K FH+YK+KE+KNGRLALLA   F VQQSAY   PGTGPLENL  HL DPWHNNIG  NI+IP
Sbjct:  110 KAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSMGKDPEKKKYPGGAFDPLGYSKDPKTFHEYKVKELKNGRLALLAFVGFCVQQSAY---PGTGPLENLAAHLADPWHNNIG--NIIIP 235

[Close]

BLAST of GR420887 vs. TrEMBL
Match: B9HLM2_POPTR (Light-harvesting complex I protein Lhca1 OS=Populus trichocarpa GN=Lhca1-2 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.746e-41
Identity = 89/133 (66.92%), Postives = 98/133 (73.68%), Query Frame = -1

Query:   95 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLA---FGVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINILIPPT 484
            KAQEWAA PGGQATYLG PVPWGTLPT+L   +    FVEHQRSMEKDP+        FDPLG     KKF +YK+KE+KNGRLALLA   F VQQSAY   PGTGPLENL THL DPWHNNIG  +I++P T
Sbjct:  114 KAQEWAAAPGGQATYLGQPVPWGTLPTVLAIEFVAIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAY---PGTGPLENLATHLADPWHNNIG--DIIVPRT 241

[Close]

BLAST of GR420887 vs. TrEMBL
Match: Q40512_TOBAC (Photosystem I light-harvesting chlorophyll a/b-binding protein OS=Nicotiana tabacum GN=LHCI PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.116e-41
Identity = 88/129 (68.22%), Postives = 95/129 (73.64%), Query Frame = -1

Query:  107 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLA---FGVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINIL 484
            KAQEWAA+PGGQATYLG PVPWGTLPTIL   +    FVEHQRSMEKDP+        FDPLG     KKF + K+KE+KNGRLALLA   F VQQSAY   PGTGPLENL THL DPWHNNIG + IL
Sbjct:  115 KAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAY---PGTGPLENLATHLADPWHNNIGDVIIL 240

[Close]

BLAST of GR420887 vs. TrEMBL
Match: D7LUY8_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485905 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.043e-40
Identity = 89/128 (69.53%), Postives = 94/128 (73.44%), Query Frame = -1

Query:  110 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLA---FGVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINI 484
            KAQEWAAVPGGQATYLGNPVPWGTLPTIL   +    FVEHQRSMEKDP+        FDPLG     KK  + K+KE+KNGRLALLA   F VQQSAY   PGTGPLENL THL DPWHNNIG I I
Sbjct:  114 KAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAY---PGTGPLENLATHLADPWHNNIGDIVI 238

[Close]

BLAST of GR420887 vs. TrEMBL
Match: C5XW47_SORBI (Putative uncharacterized protein Sb04g004770 OS=Sorghum bicolor GN=Sb04g004770 PE=4 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.780e-40
Identity = 88/131 (67.18%), Postives = 98/131 (74.81%), Query Frame = -1

Query:  101 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLA---FGVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINILIP 484
            KAQEWAAVPGGQATYLGNPVPWG+LPTILV  +    F EHQR+MEKDP+        FDPLG      KF +YK+KE+KNGRLA+LA   F VQQSAY   PGTGPLENL THL DPWHNNIG  +I+IP
Sbjct:  115 KAQEWAAVPGGQATYLGNPVPWGSLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAY---PGTGPLENLATHLADPWHNNIG--DIIIP 240

[Close]

BLAST of GR420887 vs. TrEMBL
Match: Q9C5R7_ARATH (AT3g54890 OS=Arabidopsis thaliana GN=AT3g54890/F28P10_130 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.324e-40
Identity = 88/128 (68.75%), Postives = 94/128 (73.44%), Query Frame = -1

Query:  110 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLA---FGVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINI 484
            KAQEWAA+PGGQATYLGNPVPWGTLPTIL   +    FVEHQRSMEKDP+        FDPLG     KK  + K+KE+KNGRLALLA   F VQQSAY   PGTGPLENL THL DPWHNNIG I I
Sbjct:  114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAY---PGTGPLENLATHLADPWHNNIGDIVI 238

[Close]

BLAST of GR420887 vs. TrEMBL
Match: Q01667_ARATH (AT3g54890 OS=Arabidopsis thaliana GN=AT3g54890/F28P10_130 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.324e-40
Identity = 88/128 (68.75%), Postives = 94/128 (73.44%), Query Frame = -1

Query:  110 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLA---FGVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINI 484
            KAQEWAA+PGGQATYLGNPVPWGTLPTIL   +    FVEHQRSMEKDP+        FDPLG     KK  + K+KE+KNGRLALLA   F VQQSAY   PGTGPLENL THL DPWHNNIG I I
Sbjct:  114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAY---PGTGPLENLATHLADPWHNNIGDIVI 238

[Close]

BLAST of GR420887 vs. TrEMBL
Match: B9DHK2_ARATH (AT3G54890 protein (Fragment) OS=Arabidopsis thaliana GN=AT3G54890 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.324e-40
Identity = 88/128 (68.75%), Postives = 94/128 (73.44%), Query Frame = -1

Query:  110 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLA---FGVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINI 484
            KAQEWAA+PGGQATYLGNPVPWGTLPTIL   +    FVEHQRSMEKDP+        FDPLG     KK  + K+KE+KNGRLALLA   F VQQSAY   PGTGPLENL THL DPWHNNIG I I
Sbjct:   32 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAY---PGTGPLENLATHLADPWHNNIGDIVI 156

[Close]

BLAST of GR420887 vs. TAIR peptide
Match: AT3G54890.1 (| Symbols: LHCA1 | photosystem I light harvesting complex gene 1 | chr3:20339706-20340922 REVERSE LENGTH=241)

HSP 1 Score: 168.318 bits (425), Expect = 2.053e-42
Identity = 88/128 (68.75%), Postives = 94/128 (73.44%), Query Frame = -1

Query:  110 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLA---FGVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINI 484
            KAQEWAA+PGGQATYLGNPVPWGTLPTIL   +    FVEHQRSMEKDP+        FDPLG     KK  + K+KE+KNGRLALLA   F VQQSAY   PGTGPLENL THL DPWHNNIG I I
Sbjct:  114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAY---PGTGPLENLATHLADPWHNNIGDIVI 238

[Close]

BLAST of GR420887 vs. TAIR peptide
Match: AT3G54890.2 (| Symbols: LHCA1 | photosystem I light harvesting complex gene 1 | chr3:20339706-20340922 REVERSE LENGTH=207)

HSP 1 Score: 120.939 bits (302), Expect = 3.759e-28
Identity = 70/128 (54.69%), Postives = 75/128 (58.59%), Query Frame = -1

Query:  110 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLAFG---VQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINI 484
            KAQEWAA+PGGQATYLGNPVPWGTLPTIL   +    F                                  + K+KE+KNGRLALLAF    VQQSAY   PGTGPLENL THL DPWHNNIG I I
Sbjct:  114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAF----------------------------------ELKVKEIKNGRLALLAFVGFCVQQSAY---PGTGPLENLATHLADPWHNNIGDIVI 204

[Close]

BLAST of GR420887 vs. TAIR peptide
Match: AT3G54890.4 (| Symbols: LHCA1 | photosystem I light harvesting complex gene 1 | chr3:20339881-20340922 REVERSE LENGTH=213)

HSP 1 Score: 109.768 bits (273), Expect = 8.665e-25
Identity = 53/83 (63.86%), Postives = 60/83 (72.29%), Query Frame = -1

Query:  236 KAQEWAAVPGGQATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGR 484
            KAQEWAA+PGGQATYLGNPVPWGTLPTIL   +    FVEHQRSMEKDP+        FDPLG     KK  + K+KE+KNG+
Sbjct:  114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGK 196

[Close]

BLAST of GR420887 vs. TAIR peptide
Match: AT3G54890.3 (| Symbols: LHCA1 | photosystem I light harvesting complex gene 1 | chr3:20339961-20340922 REVERSE LENGTH=164)

HSP 1 Score: 67.3958 bits (163), Expect = 4.932e-12
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = -1

Query:  353 KAQEWAAVPGGQATYLGNPVPWGTLPTIL-VPCYCH*TFVEHQRS 484
            KAQEWAA+PGGQATYLGNPVPWGTLPTIL +    H T ++ +R+
Sbjct:  114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAHLTLLDTRRT 158

[Close]

BLAST of GR420887 vs. TAIR peptide
Match: AT5G01530.1 (| Symbols: LHCB4.1 | light harvesting complex photosystem II | chr5:209084-210243 FORWARD LENGTH=290)

HSP 1 Score: 58.9214 bits (141), Expect = 1.754e-9
Identity = 41/112 (36.61%), Postives = 59/112 (52.68%), Query Frame = -1

Query:  125 ATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDT-LVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLAF---GVQQSAYWNIPGTGPLENLGTHLGDPWHNNI 448
            ++YLG P+P+     I +       ++E QR+ E D +  L    + FDPLG     +K  Q ++ E+K+ RLA++AF    VQ +A     G GPL N  THL DP H  I
Sbjct:  177 SSYLGQPLPFSISTLIWIEVLVI-GYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA----TGKGPLNNWATHLSDPLHTTI 283

[Close]

BLAST of GR420887 vs. TAIR peptide
Match: AT3G08940.2 (| Symbols: LHCB4.2 | light harvesting complex photosystem II | chr3:2717717-2718665 FORWARD LENGTH=287)

HSP 1 Score: 58.151 bits (139), Expect = 2.992e-9
Identity = 41/112 (36.61%), Postives = 58/112 (51.79%), Query Frame = -1

Query:  125 ATYLGNPVPWGTLPTILVPCYCH*TFVEHQRSMEKDPDT-LVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLAL---LAFGVQQSAYWNIPGTGPLENLGTHLGDPWHNNI 448
            ++YLG P+P+     I +       ++E QR+ E D +  L    + FDPLG  +   K  Q ++ E+K+ RLA+   L F VQ +A     G GPL N  THL DP H  I
Sbjct:  174 SSYLGQPLPFSISTLIWIEVLVI-GYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAA----TGKGPLNNWATHLSDPLHTTI 280

[Close]

BLAST of GR420887 vs. TAIR peptide
Match: AT1G45474.2 (| Symbols: LHCA5 | photosystem I light harvesting complex gene 5 | chr1:17179353-17180439 FORWARD LENGTH=256)

HSP 1 Score: 56.9954 bits (136), Expect = 6.666e-9
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = -1

Query:   92 DPLGP*NTLKKFHQYKIKEVKNGRLALLA---FGVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINILIPPTS 307
            +PLG    ++  H +K+KE+KNGRLA++A   F VQ S    +  TGP++NL  HL +PWH  I  I  L   TS
Sbjct:  188 NPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS----VTHTGPIDNLVEHLSNPWHKTI--IQTLFTSTS 256

[Close]

BLAST of GR420887 vs. TAIR peptide
Match: AT1G45474.1 (| Symbols: LHCA5 | photosystem I light harvesting complex gene 5 | chr1:17179353-17180439 FORWARD LENGTH=256)

HSP 1 Score: 56.9954 bits (136), Expect = 6.666e-9
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = -1

Query:   92 DPLGP*NTLKKFHQYKIKEVKNGRLALLA---FGVQQSAYWNIPGTGPLENLGTHLGDPWHNNIGTINILIPPTS 307
            +PLG    ++  H +K+KE+KNGRLA++A   F VQ S    +  TGP++NL  HL +PWH  I  I  L   TS
Sbjct:  188 NPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS----VTHTGPIDNLVEHLSNPWHKTI--IQTLFTSTS 256

[Close]

BLAST of GR420887 vs. TAIR peptide
Match: AT2G34420.1 (| Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265)

HSP 1 Score: 56.225 bits (134), Expect = 1.137e-8
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = -1

Query:  128 DPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLA-FGVQQSAYWNIPGTGPLENLGTHLGDPWHNN 343
            + + L+    +FDPLG     + F + K+KE+KNGRLA+ + FG    A   + G GPLENL  HL DP +NN
Sbjct:  183 EAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAI--VTGKGPLENLADHLADPVNNN 253

[Close]

BLAST of GR420887 vs. TAIR peptide
Match: AT2G34430.1 (| Symbols: LHB1B1, LHCB1.4 | light-harvesting chlorophyll-protein complex II subunit B1 | chr2:14524818-14525618 FORWARD LENGTH=266)

HSP 1 Score: 56.225 bits (134), Expect = 1.137e-8
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = -1

Query:  128 DPDTLVVKRRTFDPLGP*NTLKKFHQYKIKEVKNGRLALLA-FGVQQSAYWNIPGTGPLENLGTHLGDPWHNN 343
            + + L+    +FDPLG     + F + K+KE+KNGRLA+ + FG    A   + G GPLENL  HL DP +NN
Sbjct:  184 EAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAI--VTGKGPLENLADHLADPVNNN 254

The following BLAST results are available for this feature:

BLAST of GR420887 vs. SwissProt
BLAST of GR420887 vs. TrEMBL
BLAST of GR420887 vs. TAIR peptide

BLAST of GR420887 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
CB11_SOLLC	5.012e-39	64.89	Chlorophyll a-b binding protein 6A, chloroplastic ...	[more]
CB121_HORVU	7.238e-38	64.06	Chlorophyll a-b binding protein 1B-21, chloroplast...	[more]
CB4A_ARATH	1.573e-8	36.61	Chlorophyll a-b binding protein CP29.1, chloroplas...	[more]
CB4B_ARATH	2.683e-8	36.61	Chlorophyll a-b binding protein CP29.2, chloroplas...	[more]
CB22_HORVU	3.504e-8	49.21	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB2G_SOLLC	5.976e-8	49.21	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]
CB2A_SPIOL	5.976e-8	49.21	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB29_MAIZE	5.976e-8	50.79	Chlorophyll a-b binding protein M9, chloroplastic ...	[more]
CB25_PETSP	5.976e-8	49.21	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]
CB24_PETSP	5.976e-8	49.21	Chlorophyll a-b binding protein 25, chloroplastic ...	[more]

BLAST of GR420887 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FH03_MEDTR	3.465e-44	63.06	Putative uncharacterized protein OS=Medicago trunc...	[more]
B9T4T2_RICCO	1.901e-42	69.40	Chlorophyll A/B binding protein, putative OS=Ricin...	[more]
C6SXH7_SOYBN	9.436e-42	69.47	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9HLM2_POPTR	2.746e-41	66.92	Light-harvesting complex I protein Lhca1 OS=Populu...	[more]
Q40512_TOBAC	6.116e-41	68.22	Photosystem I light-harvesting chlorophyll a/b-bin...	[more]
D7LUY8_ARALY	1.043e-40	69.53	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
C5XW47_SORBI	1.780e-40	67.18	Putative uncharacterized protein Sb04g004770 OS=So...	[more]
Q9C5R7_ARATH	2.324e-40	68.75	AT3g54890 OS=Arabidopsis thaliana GN=AT3g54890/F28...	[more]
Q01667_ARATH	2.324e-40	68.75	AT3g54890 OS=Arabidopsis thaliana GN=AT3g54890/F28...	[more]
B9DHK2_ARATH	2.324e-40	68.75	AT3G54890 protein (Fragment) OS=Arabidopsis thalia...	[more]

BLAST of GR420887 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT3G54890.1	2.053e-42	68.75	\| Symbols: LHCA1 \| photosystem I light harvesting ...	[more]
AT3G54890.2	3.759e-28	54.69	\| Symbols: LHCA1 \| photosystem I light harvesting ...	[more]
AT3G54890.4	8.665e-25	63.86	\| Symbols: LHCA1 \| photosystem I light harvesting ...	[more]
AT3G54890.3	4.932e-12	68.89	\| Symbols: LHCA1 \| photosystem I light harvesting ...	[more]
AT5G01530.1	1.754e-9	36.61	\| Symbols: LHCB4.1 \| light harvesting complex phot...	[more]
AT3G08940.2	2.992e-9	36.61	\| Symbols: LHCB4.2 \| light harvesting complex phot...	[more]
AT1G45474.2	6.666e-9	44.00	\| Symbols: LHCA5 \| photosystem I light harvesting ...	[more]
AT1G45474.1	6.666e-9	44.00	\| Symbols: LHCA5 \| photosystem I light harvesting ...	[more]
AT2G34420.1	1.137e-8	43.84	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light ...	[more]
AT2G34430.1	1.137e-8	43.84	\| Symbols: LHB1B1, LHCB1.4 \| light-harvesting chlo...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 58..70 score
None	No IPR available	GENE3D	1.10.3460.10	no description	coord: 4..57 score: 8.6
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 4..65 score: 2.9
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 5..63 score: 1.1

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR420887 ID=GR420887; Name=GR420887; organism=Cicer arietinum; type=EST; length=511bp
ATATGATTCATTCCAATATATTAACATAGTGACAAAGACATGTAGCTGGG
TGGAGTTTTCTAATATAAGAAAAAAAAAGATTGATAAATTTTGATGTTGG
TGGAATAAGGATATTTATTGTTCCAATGTTGTTGTGCCATGGATCACCCA
AGTGAGTACCCAAATTCTCCAAAGGTCCAGTCCCTGGAATATTCCAATAA
GCTGATTGTTGAACACCAAAAGCCAACAATGCAAGACGTCCATTCTTAAC
TTCTTTAATTTTGTATTGATGGAACTTCTTTAGAGTATTTTAGGGTCCCA
AAGGATCAAAAGTTCTTCTTTTCACCACCAGGGTATCAGGGTCTTTCTCC
ATACTCCTTTGGTGTTCAACAAATGTTCAATGACAATAGCAAGGAACCAA
AATGGTGGGTAGGGTGCCCCATGGAACAGGGTTCCCTAGGTATGTTGCTT
GTCCTCCAGGGACTGCTGCCCATTCCTGAGCTTTCTAATGCCTCTACCCA
ATTTCCTAACC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln

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