HO062563

EST Overview
NameHO062563
Unique NameHO062563
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length695
Libraries
Library NameType
LIBEST_026408 Chickpea drought stressed cDNA SSH library AB1cdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
[Close]
BLAST of HO062563 vs. TrEMBL
Match: B9SJ14_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0597580 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.172e-7
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = -3 
Query:    7 RNCYPRVRGGVELLSFLGFELKEENGETWALMEAPREEEKINFIKKAIVLLEPQLV 174
            R     V G VELL F+GFEL+EE GE WA ME P +EE++  I K I LLEP+ +
Sbjct:  216 REAVSEVAGAVELLEFIGFELREEVGEMWAFMEVP-DEERVRLINKVIRLLEPRKI 270
[Close]
BLAST of HO062563 vs. TAIR peptide
Match: AT2G01650.1 (| Symbols: PUX2 | plant UBX domain-containing protein 2 | chr2:284851-286394 REVERSE LENGTH=458)

HSP 1 Score: 53.9138 bits (128), Expect = 9.696e-8
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = -3 
Query:   19 VRGGVELLSFLGFELKEENGETWALMEAPREEEKINFIKKAIVLLE 156
            V GGVELL  +GFELKEEN E WA+M+ P EE+ I  I K +  LE
Sbjct:  219 VAGGVELLELVGFELKEENDEIWAVMDVPSEEQSI-LINKVVGYLE 263
The following BLAST results are available for this feature:
BLAST of HO062563 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 1
Match NameE-valueIdentityDescription
B9SJ14_RICCO1.172e-753.57Nucleic acid binding protein, putative OS=Ricinus ... [more]
back to top
BLAST of HO062563 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G01650.19.696e-858.70| Symbols: PUX2 | plant UBX domain-containing prot... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 32..47
score
NoneNo IPR availableSEGsegsegcoord: 55..67
score
NoneNo IPR availablePANTHERPTHR23153UBX-RELATEDcoord: 12..57
score: 7.7
NoneNo IPR availablePANTHERPTHR23153:SF2UBX-RELATEDcoord: 12..57
score: 7.7

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>HO062563 ID=HO062563; Name=HO062563; organism=Cicer arietinum; type=EST; length=695bp
AGGTACCACAAGTTGTGGTTCCAATAACACTATTGCTTTCTTAATAAAAT
TTATTTTCTCCTCCTCTCTAGGAGCCTCCATCAATGCCCATGTCTCTCCA
TTCTCCTCCTTAAGTTCAAACCCTAAAAAACTAAGCAATTCAACTCCCCC
GCGTACGCGGGGATAGCAGTTTCTTTTTTCTTCTGTATATTACAACAATC
ATGGATTCAAGAGTAGTTATTCAGAGTCAAGTGAATGAGAACAACGATGA
ACAACACTCACATAAAGTTGATTCACAACAAGTGACACATGGTGCAGAAG
AAGAACATCATTCTTCTGACCATGAGAAGAAGTCTGTTCTGAATAAGGTG
AAGGCAAAGGCTAGGAAAATTAAGGATACAATTAAGAAGCATGGTCAACA
TGTAGTTGATCATGGTAATGGACATAACAATGAAAATCAGCATCCACAGA
TATAAATAGAAAAAACCAGAAAATTCCCTCAGGCTATGAAGAATCAGCAG
TGGAGACACAATCAAAACCCAAAAGTTATATATTTTGTTCATGGTGGACT
CATGTGGAAGTTATTATGTTTGTGTAGGTGTGGGAAAATTACTATATGAT
ATTGTTGTAACTTGTTAGGGGTGTGGTTTTTTTTGAAGCAATTGTAAGGT
GTGATTGAGATTAATTATAAATATTGTTTATATATGATTGTACTG
back to top