FL518978

EST Overview


Name	FL518978
Unique Name	FL518978
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	147

Libraries


Library Name	Type
LIBEST_023567 Subtracted cDNA library of drought-stressed chickpea cultivar	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of FL518978 vs. SwissProt
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.960e-22
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH+SRGDHHRNVCIIPVSAHG
Sbjct:  621 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHG 669

[Close]

BLAST of FL518978 vs. SwissProt
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.960e-22
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH+SRGDHHRNVCIIPVSAHG
Sbjct:  624 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHG 672

[Close]

BLAST of FL518978 vs. SwissProt
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.960e-22
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH+SRGDHHRNVCIIPVSAHG
Sbjct:  630 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHG 678

[Close]

BLAST of FL518978 vs. SwissProt
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.343e-22
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIP SAHG
Sbjct:  642 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPASAHG 690

[Close]

BLAST of FL518978 vs. SwissProt
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.367e-22
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH++RGDHHRNVCIIPVSAHG
Sbjct:  620 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMARGDHHRNVCIIPVSAHG 668

[Close]

BLAST of FL518978 vs. SwissProt
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.367e-22
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH++RGDHHRNVCIIPVSAHG
Sbjct:  620 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMARGDHHRNVCIIPVSAHG 668

[Close]

BLAST of FL518978 vs. SwissProt
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.367e-22
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH++RGDHHRNVCIIPVSAHG
Sbjct:  623 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMARGDHHRNVCIIPVSAHG 671

[Close]

BLAST of FL518978 vs. SwissProt
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.305e-21
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVI+AYH++RGDHHR VCIIPVSAHG
Sbjct:  620 TITGFDSFSLQPNAGAAGEYAGLMVIQAYHMARGDHHRKVCIIPVSAHG 668

[Close]

BLAST of FL518978 vs. SwissProt
Match: GCSP_VIBFM (Glycine dehydrogenase [decarboxylating] OS=Vibrio fischeri (strain MJ11) GN=gcvP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.042e-15
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = -1

Query:    1 ITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 144
            ITG+D FSLQPN+GA+GEYAGL+ I+ YH SRGD HRNVC+IP SAHG
Sbjct:  556 ITGYDEFSLQPNSGASGEYAGLIAIQRYHESRGDAHRNVCLIPSSAHG 603

[Close]

BLAST of FL518978 vs. SwissProt
Match: GCSP_VIBF1 (Glycine dehydrogenase [decarboxylating] OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gcvP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.042e-15
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = -1

Query:    1 ITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 144
            ITG+D FSLQPN+GA+GEYAGL+ I+ YH SRGD HRNVC+IP SAHG
Sbjct:  556 ITGYDEFSLQPNSGASGEYAGLIAIQRYHESRGDAHRNVCLIPSSAHG 603

[Close]

BLAST of FL518978 vs. TrEMBL
Match: Q93Z12_ARATH (AT4g33010/F26P21_130 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.982e-21
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH+SRGDHHRNVCIIPVSAHG
Sbjct:  281 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHG 329

[Close]

BLAST of FL518978 vs. TrEMBL
Match: Q0WV94_ARATH (Putative glycine dehydrogenase OS=Arabidopsis thaliana GN=At2g26080 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.982e-21
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH+SRGDHHRNVCIIPVSAHG
Sbjct:  630 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHG 678

[Close]

BLAST of FL518978 vs. TrEMBL
Match: D7M9B4_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_491390 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.982e-21
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH+SRGDHHRNVCIIPVSAHG
Sbjct:  624 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHG 672

[Close]

BLAST of FL518978 vs. TrEMBL
Match: D7LCP3_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_481465 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.982e-21
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH+SRGDHHRNVCIIPVSAHG
Sbjct:  629 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHG 677

[Close]

BLAST of FL518978 vs. TrEMBL
Match: B3H5Y8_ARATH (Uncharacterized protein At4g33010.2 OS=Arabidopsis thaliana GN=At4g33010 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.982e-21
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH+SRGDHHRNVCIIPVSAHG
Sbjct:  624 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHG 672

[Close]

BLAST of FL518978 vs. TrEMBL
Match: D7TB84_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00015211001 PE=4 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.200e-21
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYHL+RGDHHRNVCIIPVSAHG
Sbjct:  608 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHG 656

[Close]

BLAST of FL518978 vs. TrEMBL
Match: B9RRS7_RICCO (Glycine dehydrogenase, putative OS=Ricinus communis GN=RCOM_0797460 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.158e-20
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH SRGDHHRNVCIIPVSAHG
Sbjct:  642 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHKSRGDHHRNVCIIPVSAHG 690

[Close]

BLAST of FL518978 vs. TrEMBL
Match: Q8W523_MAIZE (Glycine cleavage complex P-protein (Fragment) OS=Zea mays PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.750e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH SRGDHHR+VCIIPVSAHG
Sbjct:  242 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHNSRGDHHRDVCIIPVSAHG 290

[Close]

BLAST of FL518978 vs. TrEMBL
Match: Q38766_AVESA (Victorin binding protein OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.750e-20
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGA+GEYAGLMVIRAYH +RGDHHRNVCIIPVSAHG
Sbjct:  617 TITGFDSFSLQPNAGASGEYAGLMVIRAYHRARGDHHRNVCIIPVSAHG 665

[Close]

BLAST of FL518978 vs. TrEMBL
Match: O22575_9POAL (Glycine decarboxylase P subunit OS=x Tritordeum sp. PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.750e-20
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGA+GEYAGLMVIRAYH +RGDHHRNVCIIPVSAHG
Sbjct:  616 TITGFDSFSLQPNAGASGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG 664

[Close]

BLAST of FL518978 vs. TAIR peptide
Match: AT4G33010.2 (| Symbols: AtGLDP1, GLDP1 | glycine decarboxylase P-protein 1 | chr4:15927133-15931150 REVERSE LENGTH=976)

HSP 1 Score: 104.375 bits (259), Expect = 1.501e-23
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH+SRGDHHRNVCIIPVSAHG
Sbjct:  624 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHG 672

[Close]

BLAST of FL518978 vs. TAIR peptide
Match: AT4G33010.1 (| Symbols: AtGLDP1, GLDP1 | glycine decarboxylase P-protein 1 | chr4:15926852-15931150 REVERSE LENGTH=1037)

HSP 1 Score: 104.375 bits (259), Expect = 1.501e-23
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH+SRGDHHRNVCIIPVSAHG
Sbjct:  624 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHG 672

[Close]

BLAST of FL518978 vs. TAIR peptide
Match: AT2G26080.1 (| Symbols: AtGLDP2, GLDP2 | glycine decarboxylase P-protein 2 | chr2:11109330-11113786 REVERSE LENGTH=1044)

HSP 1 Score: 104.375 bits (259), Expect = 1.501e-23
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -1

Query:    1 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHG 147
            TITGFDSFSLQPNAGAAGEYAGLMVIRAYH+SRGDHHRNVCIIPVSAHG
Sbjct:  630 TITGFDSFSLQPNAGAAGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHG 678

The following BLAST results are available for this feature:

BLAST of FL518978 vs. SwissProt
BLAST of FL518978 vs. TrEMBL
BLAST of FL518978 vs. TAIR peptide

BLAST of FL518978 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
GCSP_SOLTU	1.960e-22	97.96	Glycine dehydrogenase [decarboxylating], mitochond...	[more]
GCSP2_ARATH	1.960e-22	97.96	Glycine dehydrogenase [decarboxylating] 2, mitocho...	[more]
GCSP1_ARATH	1.960e-22	97.96	Glycine dehydrogenase [decarboxylating] 1, mitocho...	[more]
GCSP_PEA	3.343e-22	97.96	Glycine dehydrogenase [decarboxylating], mitochond...	[more]
GCSP_FLAAN	4.367e-22	95.92	Glycine dehydrogenase [decarboxylating], mitochond...	[more]
GCSPB_FLAPR	4.367e-22	95.92	Glycine dehydrogenase [decarboxylating] B, mitocho...	[more]
GCSPA_FLAPR	4.367e-22	95.92	Glycine dehydrogenase [decarboxylating] A, mitocho...	[more]
GCSP_FLATR	6.305e-21	91.84	Glycine dehydrogenase [decarboxylating], mitochond...	[more]
GCSP_VIBFM	1.042e-15	75.00	Glycine dehydrogenase [decarboxylating] OS=Vibrio ...	[more]
GCSP_VIBF1	1.042e-15	75.00	Glycine dehydrogenase [decarboxylating] OS=Vibrio ...	[more]

BLAST of FL518978 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q93Z12_ARATH	3.982e-21	97.96	AT4g33010/F26P21_130 OS=Arabidopsis thaliana PE=2 ...	[more]
Q0WV94_ARATH	3.982e-21	97.96	Putative glycine dehydrogenase OS=Arabidopsis thal...	[more]
D7M9B4_ARALY	3.982e-21	97.96	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
D7LCP3_ARALY	3.982e-21	97.96	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
B3H5Y8_ARATH	3.982e-21	97.96	Uncharacterized protein At4g33010.2 OS=Arabidopsis...	[more]
D7TB84_VITVI	5.200e-21	97.96	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9RRS7_RICCO	1.158e-20	97.96	Glycine dehydrogenase, putative OS=Ricinus communi...	[more]
Q8W523_MAIZE	5.750e-20	95.92	Glycine cleavage complex P-protein (Fragment) OS=Z...	[more]
Q38766_AVESA	5.750e-20	93.88	Victorin binding protein OS=Avena sativa PE=2 SV=1	[more]
O22575_9POAL	5.750e-20	93.88	Glycine decarboxylase P subunit OS=x Tritordeum sp...	[more]

BLAST of FL518978 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT4G33010.2	1.501e-23	97.96	\| Symbols: AtGLDP1, GLDP1 \| glycine decarboxylase ...	[more]
AT4G33010.1	1.501e-23	97.96	\| Symbols: AtGLDP1, GLDP1 \| glycine decarboxylase ...	[more]
AT2G26080.1	1.501e-23	97.96	\| Symbols: AtGLDP2, GLDP2 \| glycine decarboxylase ...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020581	Glycine cleavage system P protein	PANTHER	PTHR11773	GLYCINE DEHYDROGENASE	coord: 1..49 score: 1.6

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FL518978 ID=FL518978; Name=FL518978; organism=Cicer arietinum; type=EST; length=147bp
ACCATGTGCTGAAACCGGTATAATGCAAACATTGCGGTGGTGGTCGCCTC
TCGACAAATGATATGCACGAATAACCATGAGTCCAGCATATTCTCCAGCA
GCACCAGCATTTGGTTGCAGAGAGAATGAGTCAAATCCAGTGATGGT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR020581	GDC_P

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