GR406307

EST Overview


Name	GR406307
Unique Name	GR406307
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	201

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR406307 vs. TrEMBL
Match: D2CPV4_VICFA (Putative ethylene responsive factor OS=Vicia faba GN=ERF3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.945e-16
Identity = 41/66 (62.12%), Postives = 44/66 (66.67%), Query Frame = 3

Query:    3 VWLGTFXXXXXXXXXXXXXXXNLRGPKAKTNFPLSPPFYHNLEAGDPFSDQRFYAGAVAGDGFQDH 200
            VWLGTF               NLRGPKAKTNFPL+ PFY N E G+PF + RFYAGA AGDGFQDH
Sbjct:   47 VWLGTFDTAEEAARAYDTAARNLRGPKAKTNFPLAQPFYQNPETGNPFGELRFYAGAGAGDGFQDH 112

[Close]

BLAST of GR406307 vs. TrEMBL
Match: Q5MJ54_PEA (AT-rich element binding factor 2 OS=Pisum sativum GN=ATF2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.591e-14
Identity = 40/66 (60.61%), Postives = 44/66 (66.67%), Query Frame = 3

Query:    3 VWLGTFXXXXXXXXXXXXXXXNLRGPKAKTNFPLSPPFYHNLEAGDPFSDQRFYAGAVAGDGFQDH 200
            VWLGTF               NLRGPKAKTNFPL+ PFY N EAG+PF + RFYAG  AG+GFQDH
Sbjct:   47 VWLGTFDTAEEAARAYDTAARNLRGPKAKTNFPLAQPFYQNPEAGNPFGELRFYAGG-AGEGFQDH 111

The following BLAST results are available for this feature:

BLAST of GR406307 vs. TrEMBL

BLAST of GR406307 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 2


Match Name	E-value	Identity	Description
D2CPV4_VICFA	4.945e-16	62.12	Putative ethylene responsive factor OS=Vicia faba ...	[more]
Q5MJ54_PEA	1.591e-14	60.61	AT-rich element binding factor 2 OS=Pisum sativum ...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 31..43 score
None	No IPR available	SEG	seg	seg	coord: 7..21 score
IPR001471	Pathogenesis-related transcriptional factor/ERF, DNA-binding	GENE3D	3.30.730.10	no description	coord: 1..35 score: 1.4
IPR001471	Pathogenesis-related transcriptional factor/ERF, DNA-binding	PFAM	PF00847	AP2	coord: 1..25 score: 1.6
IPR001471	Pathogenesis-related transcriptional factor/ERF, DNA-binding	SMART	SM00380	no description	coord: 1..39 score: 1.7
IPR001471	Pathogenesis-related transcriptional factor/ERF, DNA-binding	PROFILE	PS51032	AP2_ERF	coord: 1..33 score: 13
IPR016177	DNA-binding, integrase-type	SUPERFAMILY	54171	DNA-binding domain	coord: 1..36 score: 9

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR406307 ID=GR406307; Name=GR406307; organism=Cicer arietinum; type=EST; length=201bp
GAGTTTGGCTTGGAACCTTCGACACCGCTGAAGAAGCGGCGCGTGCATAC
GACACCGCCGCCAGAAACCTCCGGGGACCTAAGGCCAAAACTAATTTTCC
TCTTTCTCCACCTTTTTACCATAATCTTGAAGCCGGAGATCCATTTTCCG
ATCAACGTTTCTATGCCGGCGCCGTTGCCGGCGATGGGTTTCAGGATCAT
C

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	DNA-binding transcription factor activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf

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