HO063657

EST Overview


Name	HO063657
Unique Name	HO063657
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	571

Libraries


Library Name	Type
LIBEST_026410 Chickpea drought stressed cDNA SSH library AR1	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of HO063657 vs. TrEMBL
Match: B9HVB3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_822012 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.882e-17
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = -2

Query:  418 TQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 567
            TQEHVKASQMLE LQ ILD+EAEMFVLKMWRMLIFEIKKVETGL+LRSKS
Sbjct:  845 TQEHVKASQMLEMLQAILDDEAEMFVLKMWRMLIFEIKKVETGLSLRSKS 894

[Close]

BLAST of HO063657 vs. TrEMBL
Match: D7TNR7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_26.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00020233001 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.475e-16
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = -2

Query:  418 TQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 567
            TQEHVKASQMLE LQ ILD+EAEMFVLKMWRMLIFEIKKVETGL+LRSK+
Sbjct:  779 TQEHVKASQMLELLQSILDDEAEMFVLKMWRMLIFEIKKVETGLSLRSKT 828

[Close]

BLAST of HO063657 vs. TrEMBL
Match: B9HJS5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_874082 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.516e-16
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = -2

Query:  418 TQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 567
            TQ+HVKASQMLE LQ ILD+EAE+FVLKMWRMLIFEIKKVETGL+LRSKS
Sbjct:  165 TQDHVKASQMLEMLQAILDDEAEIFVLKMWRMLIFEIKKVETGLSLRSKS 214

[Close]

BLAST of HO063657 vs. TrEMBL
Match: A9PG93_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.516e-16
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = -2

Query:  418 TQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 567
            TQ+HVKASQMLE LQ ILD+EAE+FVLKMWRMLIFEIKKVETGL+LRSKS
Sbjct:  309 TQDHVKASQMLEMLQAILDDEAEIFVLKMWRMLIFEIKKVETGLSLRSKS 358

[Close]

BLAST of HO063657 vs. TrEMBL
Match: B9SH84_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0527800 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.286e-16
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = -2

Query:  418 TQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 567
            T++HVKASQMLE LQ ILD+EAEMFVLKMWRMLIFEIKKVETGLALRS+S
Sbjct:  899 TRDHVKASQMLEMLQSILDDEAEMFVLKMWRMLIFEIKKVETGLALRSRS 948

[Close]

BLAST of HO063657 vs. TrEMBL
Match: D7KXB4_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_893524 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.355e-14
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = -2

Query:  418 TQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 567
            TQ+HVKASQMLE LQ ILDEEAEMFVLKMWRMLIFEIK+VE G+ ++SK+
Sbjct:  856 TQQHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKRVEAGVPVKSKA 905

[Close]

BLAST of HO063657 vs. TrEMBL
Match: Q8VY15_ARATH (Putative uncharacterized protein At1g60210 OS=Arabidopsis thaliana GN=At1g60210 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.852e-14
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = -2

Query:  418 TQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 567
            TQ+HV+ASQMLE LQ ILDEEAEMFVLKMWRMLIFEIK+VE G+ ++SK+
Sbjct:  850 TQQHVQASQMLELLQSILDEEAEMFVLKMWRMLIFEIKRVEAGVPVKSKA 899

[Close]

BLAST of HO063657 vs. TrEMBL
Match: O80743_ARATH (T13D8.9 protein OS=Arabidopsis thaliana GN=T13D8.9 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.852e-14
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = -2

Query:  418 TQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 567
            TQ+HV+ASQMLE LQ ILDEEAEMFVLKMWRMLIFEIK+VE G+ ++SK+
Sbjct:  732 TQQHVQASQMLELLQSILDEEAEMFVLKMWRMLIFEIKRVEAGVPVKSKA 781

[Close]

BLAST of HO063657 vs. TrEMBL
Match: Q6ZA70_ORYSJ (Putative RNA-binding region RNP-1 and Splicing factor PWI family member protein OS=Oryza sativa subsp. japonica GN=P0433E10.19 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.441e-13
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = -2

Query:  418 TQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 567
            T++HV+AS+MLE LQ ILD EAEMFVLKMWRMLIFEIKKVETGL+ R+K+
Sbjct:  870 TKDHVQASKMLELLQSILDVEAEMFVLKMWRMLIFEIKKVETGLSGRAKA 919

[Close]

BLAST of HO063657 vs. TrEMBL
Match: B9G0X0_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_27321 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.441e-13
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = -2

Query:  418 TQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 567
            T++HV+AS+MLE LQ ILD EAEMFVLKMWRMLIFEIKKVETGL+ R+K+
Sbjct:  870 TKDHVQASKMLELLQSILDVEAEMFVLKMWRMLIFEIKKVETGLSGRAKA 919

[Close]

BLAST of HO063657 vs. TAIR peptide
Match: AT1G60200.1 (| Symbols: | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein | chr1:22200882-22205241 REVERSE LENGTH=899)

HSP 1 Score: 80.8777 bits (198), Expect = 5.285e-16
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = -2

Query:  418 TQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 567
            TQ+HV+ASQMLE LQ ILDEEAEMFVLKMWRMLIFEIK+VE G+ ++SK+
Sbjct:  850 TQQHVQASQMLELLQSILDEEAEMFVLKMWRMLIFEIKRVEAGVPVKSKA 899

The following BLAST results are available for this feature:

BLAST of HO063657 vs. TrEMBL
BLAST of HO063657 vs. TAIR peptide

BLAST of HO063657 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9HVB3_POPTR	3.882e-17	92.00	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7TNR7_VITVI	1.475e-16	90.00	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9HJS5_POPTR	2.516e-16	88.00	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9PG93_POPTR	2.516e-16	88.00	Putative uncharacterized protein OS=Populus tricho...	[more]
B9SH84_RICCO	3.286e-16	88.00	Putative uncharacterized protein OS=Ricinus commun...	[more]
D7KXB4_ARALY	2.355e-14	80.00	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q8VY15_ARATH	6.852e-14	78.00	Putative uncharacterized protein At1g60210 OS=Arab...	[more]
O80743_ARATH	6.852e-14	78.00	T13D8.9 protein OS=Arabidopsis thaliana GN=T13D8.9...	[more]
Q6ZA70_ORYSJ	4.441e-13	78.00	Putative RNA-binding region RNP-1 and Splicing fac...	[more]
B9G0X0_ORYSJ	4.441e-13	78.00	Putative uncharacterized protein OS=Oryza sativa s...	[more]

BLAST of HO063657 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G60200.1	5.285e-16	78.00	\| Symbols: \| splicing factor PWI domain-containin...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002483	Splicing factor PWI	PFAM	PF01480	PWI	coord: 3..40 score: 1.3
IPR002483	Splicing factor PWI	PROFILE	PS51025	PWI	coord: 1..51 score: 17
None	No IPR available	GENE3D	1.20.1390.10	no description	coord: 4..42 score: 1.7
None	No IPR available	PANTHER	PTHR18806	RBM25 PROTEIN	coord: 3..45 score: 1

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>HO063657 ID=HO063657; Name=HO063657; organism=Cicer arietinum; type=EST; length=571bp
CAAAAAATAGTCTATATTTTGGAATAAAATTTTAGTTGTACAGCTTANAA
CTACATCTTGCTTGACTGAATCATATTGGAGGGTATAACACCTTTGGACA
GTATTTCTTAACGCAAGAATGAGGACGATATTCTCTTCAAATCAAACAAA
AAAGAATGCAACAGAAGTCCAAGACAGTCATCATCAACAGATCGAGGTTG
ACTATTCACATTAGAAAAATTGCCACCGGATTCTCATGCATAAAGAAAAC
GGTCATTTATCAAGATAACTACTTGAATCTTGAAGCAATACGAACTGAAA
AAAGTTTGATTATGCAGCCATCTTATAATTTCAGCTGGCCACATATAATG
AGATGGNGGCAAAAACCTAAATCCAGCAGAAAAGGAAAAGGGTAGAACAG
CAATATCCAATAAATCATGATTTTGACCTCAAAGCAAGCCCTGTCTCAAC
CTTCTTGATTTCAAAGATAAGCATCCTCCACATCTTGAGAACGAACATTT
CAGCCTCTTCATCTAAAATGATCTGAAGACGCTCTAGCATTTGAGATGCT
TTCACATGCTCTTGCGTACCT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR002483	PWI_dom

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