GR406284

EST Overview
NameGR406284
Unique NameGR406284
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length242
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Homology
[Close]
BLAST of GR406284 vs. SwissProt
Match: RT10_PEA (Ribosomal protein S10, mitochondrial OS=Pisum sativum GN=RPS10 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.166e-25
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 2 
Query:   68 MTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            MTTKI IVIRSFDHPFLEN+FGGLPPYT KIGLPESRVLYTVLRSPHIDKKSREQFEM
Sbjct:    1 MTTKIRIVIRSFDHPFLENHFGGLPPYTWKIGLPESRVLYTVLRSPHIDKKSREQFEM 58
[Close]
BLAST of GR406284 vs. SwissProt
Match: RT10_ARATH (40S ribosomal protein S10, mitochondrial OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 2 
Query:   32 RKRSQPKRNLKVMTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            +K +  +   K+  TKICI IRSF +P  E     LPP+TRK+ +P++R LYTVLRSPH+DKKSREQFEM
Sbjct:  114 QKEAAEESTSKIKGTKICIAIRSFVNP--EKQAWCLPPHTRKVAMPDTRTLYTVLRSPHVDKKSREQFEM 181
[Close]
BLAST of GR406284 vs. SwissProt
Match: RT10_MARPO (Ribosomal protein S10, mitochondrial OS=Marchantia polymorpha GN=RPS10 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.289e-14
Identity = 41/58 (70.69%), Postives = 44/58 (75.86%), Query Frame = 2 
Query:   68 MTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            MT KICIVI+SF     EN   GL   TRKIGLP+ + LYTVLRSPHIDKKSREQFEM
Sbjct:    1 MTAKICIVIKSF-----ENQRSGLLLNTRKIGLPKKQTLYTVLRSPHIDKKSREQFEM 53
[Close]
BLAST of GR406284 vs. SwissProt
Match: RS10_MAGSM (30S ribosomal protein S10 OS=Magnetococcus sp. (strain MC-1) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 6.632e-7
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 2 
Query:   77 KICIVIRSFDHPFLENNFGGLPPYTRKIG--------LPESRVLYTVLRSPHIDKKSREQFEM 241
            KI I +++FDH  L+ + G +    R+ G        LP     YTVLRSPH+DKKSREQFE+
Sbjct:    6 KIRIRLKAFDHRILDQSTGEIVQTARRTGADIRGPIPLPTKINRYTVLRSPHVDKKSREQFEI 68
[Close]
BLAST of GR406284 vs. SwissProt
Match: RS10_CARHZ (30S ribosomal protein S10 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 6.632e-7
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 2 
Query:   77 KICIVIRSFDHPFLENNFGGLPPYTRKIG--------LPESRVLYTVLRSPHIDKKSREQFEM 241
            KI I +++F+H  L+ +   +    ++ G        LP  R LYTVLRSPHIDK SREQFE+
Sbjct:    5 KIRIKLKAFEHTILDQSAAKIVETAKRTGASVSGPIPLPTERSLYTVLRSPHIDKDSREQFEL 67
[Close]
BLAST of GR406284 vs. TrEMBL
Match: Q70G82_SOLCO (Ribosomal protein S10 OS=Solanum commersonii GN=rps10 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.522e-25
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 2 
Query:   32 RKRSQPKRNLKVMTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            R+ SQ +R  KV TTKI IVIRSFDHPFLEN+F GLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQF M
Sbjct:    8 RRVSQKERPPKVTTTKIGIVIRSFDHPFLENHFWGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFFM 77
[Close]
BLAST of GR406284 vs. TrEMBL
Match: Q70G78_9SOLN (Ribosomal protein S10 OS=Solanum commersonii x Solanum tuberosum GN=rps10 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.522e-25
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 2 
Query:   32 RKRSQPKRNLKVMTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            R+ SQ +R  KV TTKI IVIRSFDHPFLEN+F GLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQF M
Sbjct:    8 RRVSQKERPPKVTTTKIGIVIRSFDHPFLENHFWGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFFM 77
[Close]
BLAST of GR406284 vs. TrEMBL
Match: Q36552_SOLTU (Ribosomal protein S10 OS=Solanum tuberosum GN=rps10 PE=4 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 7.522e-25
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 2 
Query:   32 RKRSQPKRNLKVMTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            R+ SQ +R  KV TTKI IVIRSFDHPFLEN+F GLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQF M
Sbjct:    8 RRVSQKERPPKVTTTKIGIVIRSFDHPFLENHFWGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFFM 77
[Close]
BLAST of GR406284 vs. TrEMBL
Match: O99866_SOLTU (Ribosomal protein subunit 10 OS=Solanum tuberosum GN=rps10 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.522e-25
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 2 
Query:   32 RKRSQPKRNLKVMTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            R+ SQ +R  KV TTKI IVIRSFDHPFLEN+F GLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQF M
Sbjct:    8 RRVSQKERPPKVTTTKIGIVIRSFDHPFLENHFWGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFFM 77
[Close]
BLAST of GR406284 vs. TrEMBL
Match: D5I3D5_CITLA (Ribosomal protein S10 OS=Citrullus lanatus GN=rps10 PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.876e-24
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 2 
Query:   68 MTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            MTTKICIVIRSFDHPF EN+F GLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEM
Sbjct:    1 MTTKICIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEM 58
[Close]
BLAST of GR406284 vs. TrEMBL
Match: D5I3G7_CUCPE (Ribosomal protein S10 OS=Cucurbita pepo GN=rps10 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.419e-23
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 2 
Query:   68 MTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            MTTKICIVIRSFDHPFLEN+F GLPPYTRKI LPESRV YTVLRSPHIDKKSREQFEM
Sbjct:    1 MTTKICIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIDKKSREQFEM 58
[Close]
BLAST of GR406284 vs. TrEMBL
Match: B6VJW6_VITVI (Ribosomal protein S10 OS=Vitis vinifera GN=rps10 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.853e-23
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 2 
Query:   68 MTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            MTTKI IVIRSFDHPF EN+F GLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM
Sbjct:    1 MTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 58
[Close]
BLAST of GR406284 vs. TrEMBL
Match: B9U3L9_CARPA (Ribosomal protein S10 OS=Carica papaya GN=rps10 PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.160e-23
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 2 
Query:   68 MTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            MTTKI IVIRSFDHPF+EN F GLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM
Sbjct:    1 MTTKIRIVIRSFDHPFMENLFWGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 58
[Close]
BLAST of GR406284 vs. TrEMBL
Match: Q5MA18_TOBAC (Ribosomal protein S10 OS=Nicotiana tabacum GN=rps10 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.201e-22
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 2 
Query:   68 MTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            MTTKI IVIRSFDHPF EN+F GLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQF M
Sbjct:    1 MTTKIGIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFYM 58
[Close]
BLAST of GR406284 vs. TrEMBL
Match: B0BLE8_CYCTA (Ribosomal protein S10 OS=Cycas taitungensis GN=rps10 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.422e-15
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 2 
Query:   68 MTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            MT KI IV++SF+     NN GGLP YTRKIG PE RVLYTVLRSPHIDKKSREQFEM
Sbjct:    1 MTAKIRIVMKSFEERL--NNLGGLPRYTRKIGSPEERVLYTVLRSPHIDKKSREQFEM 56
[Close]
BLAST of GR406284 vs. TAIR peptide
Match: AT3G22300.1 (| Symbols: RPS10 | ribosomal protein S10 | chr3:7885737-7886613 FORWARD LENGTH=241)

HSP 1 Score: 82.0333 bits (201), Expect = 7.948e-17
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 2 
Query:   32 RKRSQPKRNLKVMTTKICIVIRSFDHPFLENNFGGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEM 241
            +K +  +   K+  TKICI IRSF +P  E     LPP+TRK+ +P++R LYTVLRSPH+DKKSREQFEM
Sbjct:  114 QKEAAEESTSKIKGTKICIAIRSFVNP--EKQAWCLPPHTRKVAMPDTRTLYTVLRSPHVDKKSREQFEM 181
The following BLAST results are available for this feature:
BLAST of GR406284 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
RT10_PEA3.166e-2594.83Ribosomal protein S10, mitochondrial OS=Pisum sati... [more]
RT10_ARATH1.021e-1557.1440S ribosomal protein S10, mitochondrial OS=Arabid... [more]
RT10_MARPO4.289e-1470.69Ribosomal protein S10, mitochondrial OS=Marchantia... [more]
RS10_MAGSM6.632e-746.0330S ribosomal protein S10 OS=Magnetococcus sp. (st... [more]
RS10_CARHZ6.632e-744.4430S ribosomal protein S10 OS=Carboxydothermus hydr... [more]
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BLAST of GR406284 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q70G82_SOLCO7.522e-2584.29Ribosomal protein S10 OS=Solanum commersonii GN=rp... [more]
Q70G78_9SOLN7.522e-2584.29Ribosomal protein S10 OS=Solanum commersonii x Sol... [more]
Q36552_SOLTU7.522e-2584.29Ribosomal protein S10 OS=Solanum tuberosum GN=rps1... [more]
O99866_SOLTU7.522e-2584.29Ribosomal protein subunit 10 OS=Solanum tuberosum ... [more]
D5I3D5_CITLA4.876e-2493.10Ribosomal protein S10 OS=Citrullus lanatus GN=rps1... [more]
D5I3G7_CUCPE1.419e-2393.10Ribosomal protein S10 OS=Cucurbita pepo GN=rps10 P... [more]
B6VJW6_VITVI1.853e-2393.10Ribosomal protein S10 OS=Vitis vinifera GN=rps10 P... [more]
B9U3L9_CARPA3.160e-2393.10Ribosomal protein S10 OS=Carica papaya GN=rps10 PE... [more]
Q5MA18_TOBAC1.201e-2291.38Ribosomal protein S10 OS=Nicotiana tabacum GN=rps1... [more]
B0BLE8_CYCTA1.422e-1575.86Ribosomal protein S10 OS=Cycas taitungensis GN=rps... [more]
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BLAST of GR406284 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G22300.17.948e-1757.14| Symbols: RPS10 | ribosomal protein S10 | chr3:78... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 17..30
score: 9.4e-09coord: 44..59
score: 9.4e-09coord: 65..71
score: 9.4
IPR001848Ribosomal protein S10GENE3D3.30.70.600no descriptioncoord: 17..71
score: 2.8
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 44..71
score: 9.4
IPR001848Ribosomal protein S10PFAMPF00338Ribosomal_S10coord: 40..71
score: 8.5
IPR001848Ribosomal protein S10SUPERFAMILY54999Ribosomal protein S10coord: 17..71
score: 7.5
IPR005731Ribosomal protein S10 subgroupPANTHERPTHR11700:SF230S RIBOSOMAL PROTEIN S10coord: 44..71
score: 9.4

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR406284 ID=GR406284; Name=GR406284; organism=Cicer arietinum; type=EST; length=242bp
GGCGCTGCTGGATGCTTTTGATCAATAGAACAGGAAGAGGAGTCAGCCAA
AAAGAAATTTGAAAGTAATGACCACCAAGATATGCATAGTGATTCGATCT
TTTGATCACCCATTTTTGGAAAACAATTTTGGGGGGCTTCCGCCTTACAC
ACGGAAGATTGGATTGCCTGAATCACGAGTCTTATATACTGTGTTACGAT
CACCTCATATTGATAAAAAGTCTAGAGAACAATTTGAAATGG
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR001848Ribosomal_uS10
IPR005731Ribosomal protein S10 subgroup