GR421074

EST Overview


Name	GR421074
Unique Name	GR421074
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	404

Libraries


Library Name	Type
LIBEST_024785 ICCV2 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28

Homology

[Close]

BLAST of GR421074 vs. SwissProt
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 1.039e-7
Identity = 38/76 (50.00%), Postives = 44/76 (57.89%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVRA------KARGKRNSRGFR 404
            GECLTFD+      L  +TV  RG +N  +        GPAPGVPHS +KP   YVRA      KARGKR SRGF+
Sbjct:  117 GECLTFDQLALRAPLGQNTVLLRGPKNSRE---AVKHFGPAPGVPHSHSKP---YVRAKGRKFEKARGKRKSRGFK 186

[Close]

BLAST of GR421074 vs. SwissProt
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.356e-7
Identity = 39/78 (50.00%), Postives = 44/78 (56.41%), Query Frame = -1

Query:  204 GECLTFDR-----PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVRA------KARGKRNSRGFR 404
            GECLTFD+     PL     TV  RG +N  +        GPAPGVPHS TKP   YVR+      KARG+R SRGFR
Sbjct:  114 GECLTFDQLALRLPL---TDTVLLRGPKNARE---AVKHFGPAPGVPHSHTKP---YVRSKGRKFEKARGRRKSRGFR 182

[Close]

BLAST of GR421074 vs. SwissProt
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.356e-7
Identity = 38/76 (50.00%), Postives = 43/76 (56.58%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVR------AKARGKRNSRGFR 404
            GECLTFD+      L  +TV  RG +N  +        GPAPGVPHS TKP   YVR       KARGKR SRGF+
Sbjct:  117 GECLTFDQLALRAPLGQNTVLLRGPKNSRE---AVKHFGPAPGVPHSNTKP---YVRHKGRKFEKARGKRKSRGFK 186

[Close]

BLAST of GR421074 vs. TrEMBL
Match: C6SWN7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.564e-8
Identity = 41/76 (53.95%), Postives = 45/76 (59.21%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVRAK------ARGKRNSRGFR 404
            GECLTFD+      L  +TV  RG +N  +        GPAPGVPHS TKP   YVRAK      ARGKRNSRGFR
Sbjct:  117 GECLTFDQLALRAPLGQNTVLLRGPKNARE---AVKHFGPAPGVPHSHTKP---YVRAKGRKFERARGKRNSRGFR 186

[Close]

BLAST of GR421074 vs. TrEMBL
Match: C6T0R5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.462e-7
Identity = 40/76 (52.63%), Postives = 45/76 (59.21%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVRAK------ARGKRNSRGFR 404
            GECLTFD+      L  +TV  RG +N  +        GPAPGVPHS TKP   YVRAK      ARG+RNSRGFR
Sbjct:  117 GECLTFDQLALRAPLGQNTVLLRGPKNARE---AVKHFGPAPGVPHSHTKP---YVRAKGRKFERARGRRNSRGFR 186

[Close]

BLAST of GR421074 vs. TrEMBL
Match: B9SAT7_RICCO (60S ribosomal protein L18, putative OS=Ricinus communis GN=RCOM_1178700 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.462e-7
Identity = 40/76 (52.63%), Postives = 45/76 (59.21%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVRAK------ARGKRNSRGFR 404
            GECLTFD+      L  +TV  RG +N  +        GPAPGVPHS TKP   YVRAK      ARG+RNSRGFR
Sbjct:  117 GECLTFDQLALRAPLGQNTVLLRGPKNARE---AVKHFGPAPGVPHSHTKP---YVRAKGRKFERARGRRNSRGFR 186

[Close]

BLAST of GR421074 vs. TrEMBL
Match: B9I7B8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_570762 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.462e-7
Identity = 40/76 (52.63%), Postives = 45/76 (59.21%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVRA------KARGKRNSRGFR 404
            GECLTFD+      L  +TV  RG +N  +        GPAPGVPHS TKP   YVRA      KARGKRNS+GFR
Sbjct:  117 GECLTFDQLALRAPLGQNTVLLRGPKNARE---AVKHFGPAPGVPHSHTKP---YVRAKGRKFEKARGKRNSKGFR 186

[Close]

BLAST of GR421074 vs. TrEMBL
Match: C6T531_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.910e-7
Identity = 40/76 (52.63%), Postives = 44/76 (57.89%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVRAK------ARGKRNSRGFR 404
            GECLTFD       L  +TV  RG +N  +        GPAPGVPHS TKP   YVRAK      ARG+RNSRGFR
Sbjct:  117 GECLTFDELALRAPLGQNTVLLRGPKNARE---AVKHFGPAPGVPHSHTKP---YVRAKGRKFERARGRRNSRGFR 186

[Close]

BLAST of GR421074 vs. TrEMBL
Match: A9PAJ5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_581899 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.910e-7
Identity = 40/76 (52.63%), Postives = 45/76 (59.21%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVRA------KARGKRNSRGFR 404
            GECLTFD+      L  +TV  RG +N  +        GPAPGVPHS TKP   +VRA      KARGKRNSRGFR
Sbjct:  117 GECLTFDQLALRAPLGQNTVLLRGPKNARE---AVKHFGPAPGVPHSHTKP---FVRAKGRKFEKARGKRNSRGFR 186

[Close]

BLAST of GR421074 vs. TrEMBL
Match: D4P866_LINUS (Putative ribosomal protein L18 (Fragment) OS=Linum usitatissimum PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.258e-7
Identity = 39/76 (51.32%), Postives = 45/76 (59.21%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVRA------KARGKRNSRGFR 404
            GECLTFD+      L  +TV  RG +N  +        GPAPGVPHS TKP   YVR+      KARG+RNSRGFR
Sbjct:   84 GECLTFDQLALRAPLGQNTVLLRGPKNARE---AVKHFGPAPGVPHSHTKP---YVRSKGRKFEKARGRRNSRGFR 153

[Close]

BLAST of GR421074 vs. TrEMBL
Match: C6SYU5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.258e-7
Identity = 39/76 (51.32%), Postives = 45/76 (59.21%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVRAK------ARGKRNSRGFR 404
            GECLTFD+      L  +TV  RG +N  +        GPAPGVPHS TKP   YVRAK      ARG++NSRGFR
Sbjct:  117 GECLTFDQLALRAPLGQNTVLLRGPKNARE---AVKHFGPAPGVPHSHTKP---YVRAKGRKFERARGRKNSRGFR 186

[Close]

BLAST of GR421074 vs. TrEMBL
Match: B9RFD6_RICCO (60S ribosomal protein L18, putative OS=Ricinus communis GN=RCOM_1433890 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.258e-7
Identity = 39/76 (51.32%), Postives = 45/76 (59.21%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVRAK------ARGKRNSRGFR 404
            GECLTFD+      L  +TV  RG +N  +        GPAPGVPHS TKP   YVR+K      ARG+RNSRGFR
Sbjct:  333 GECLTFDQLAMRAPLGQNTVLLRGPKNARE---AVKHFGPAPGVPHSHTKP---YVRSKGRKFERARGRRNSRGFR 402

[Close]

BLAST of GR421074 vs. TrEMBL
Match: B9GSC1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_552462 PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.255e-7
Identity = 38/76 (50.00%), Postives = 45/76 (59.21%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVRA------KARGKRNSRGFR 404
            GECLTFD+      L  +TV  RG +N  +        GPAPGVPHS TKP   Y+R+      KARGKRNS+GFR
Sbjct:  117 GECLTFDQLALRAPLGQNTVLLRGPKNARE---AVKHFGPAPGVPHSHTKP---YIRSKGRKFEKARGKRNSKGFR 186

[Close]

BLAST of GR421074 vs. TAIR peptide
Match: AT3G05590.1 (| Symbols: RPL18 | ribosomal protein L18 | chr3:1621511-1622775 FORWARD LENGTH=187)

HSP 1 Score: 55.4546 bits (132), Expect = 1.148e-8
Identity = 38/76 (50.00%), Postives = 44/76 (57.89%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVRA------KARGKRNSRGFR 404
            GECLTFD+      L  +TV  RG +N  +        GPAPGVPHS +KP   YVRA      KARGKR SRGF+
Sbjct:  117 GECLTFDQLALRAPLGQNTVLLRGPKNSRE---AVKHFGPAPGVPHSHSKP---YVRAKGRKFEKARGKRKSRGFK 186

[Close]

BLAST of GR421074 vs. TAIR peptide
Match: AT5G27850.1 (| Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr5:9873169-9874297 FORWARD LENGTH=187)

HSP 1 Score: 55.0694 bits (131), Expect = 1.499e-8
Identity = 38/76 (50.00%), Postives = 43/76 (56.58%), Query Frame = -1

Query:  204 GECLTFDR---PL*LAFSTVFFRGGQNPMKL*STRMPVGPAPGVPHSPTKPQGKYVR------AKARGKRNSRGFR 404
            GECLTFD+      L  +TV  RG +N  +        GPAPGVPHS TKP   YVR       KARGKR SRGF+
Sbjct:  117 GECLTFDQLALRAPLGQNTVLLRGPKNSRE---AVKHFGPAPGVPHSNTKP---YVRHKGRKFEKARGKRKSRGFK 186

[Close]

BLAST of GR421074 vs. TAIR peptide
Match: AT2G47570.2 (| Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr2:19515898-19516717 REVERSE LENGTH=135)

HSP 1 Score: 51.6026 bits (122), Expect = 1.657e-7
Identity = 38/80 (47.50%), Postives = 44/80 (55.00%), Query Frame = -1

Query:  204 GECLTFDRPL*LAF-------STVFFRGGQNPMKL*STRMPV---GPAPGVPHSPTKPQGKYVRAK---ARGKRNSRGFR 404
            GECLTFD+   LA        +TV  RG +N      TR  V   GPAPGVPHS TKP  +    K   ARG+R SRGF+
Sbjct:   64 GECLTFDQ---LALPCPTWSENTVLLRGPKN------TREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFK 134

[Close]

BLAST of GR421074 vs. TAIR peptide
Match: AT2G47570.1 (| Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr2:19515898-19516717 REVERSE LENGTH=135)

HSP 1 Score: 51.6026 bits (122), Expect = 1.657e-7
Identity = 38/80 (47.50%), Postives = 44/80 (55.00%), Query Frame = -1

Query:  204 GECLTFDRPL*LAF-------STVFFRGGQNPMKL*STRMPV---GPAPGVPHSPTKPQGKYVRAK---ARGKRNSRGFR 404
            GECLTFD+   LA        +TV  RG +N      TR  V   GPAPGVPHS TKP  +    K   ARG+R SRGF+
Sbjct:   64 GECLTFDQ---LALPCPTWSENTVLLRGPKN------TREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFK 134

The following BLAST results are available for this feature:

BLAST of GR421074 vs. SwissProt
BLAST of GR421074 vs. TrEMBL
BLAST of GR421074 vs. TAIR peptide

BLAST of GR421074 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 3


Match Name	E-value	Identity	Description
RL182_ARATH	1.039e-7	50.00	60S ribosomal protein L18-2 OS=Arabidopsis thalian...	[more]
RL18_CICAR	1.356e-7	50.00	60S ribosomal protein L18 (Fragment) OS=Cicer arie...	[more]
RL183_ARATH	1.356e-7	50.00	60S ribosomal protein L18-3 OS=Arabidopsis thalian...	[more]

BLAST of GR421074 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6SWN7_SOYBN	6.564e-8	53.95	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6T0R5_SOYBN	1.462e-7	52.63	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9SAT7_RICCO	1.462e-7	52.63	60S ribosomal protein L18, putative OS=Ricinus com...	[more]
B9I7B8_POPTR	1.462e-7	52.63	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
C6T531_SOYBN	1.910e-7	52.63	Putative uncharacterized protein OS=Glycine max PE...	[more]
A9PAJ5_POPTR	1.910e-7	52.63	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D4P866_LINUS	3.258e-7	51.32	Putative ribosomal protein L18 (Fragment) OS=Linum...	[more]
C6SYU5_SOYBN	3.258e-7	51.32	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9RFD6_RICCO	3.258e-7	51.32	60S ribosomal protein L18, putative OS=Ricinus com...	[more]
B9GSC1_POPTR	4.255e-7	50.00	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]

BLAST of GR421074 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT3G05590.1	1.148e-8	50.00	\| Symbols: RPL18 \| ribosomal protein L18 \| chr3:16...	[more]
AT5G27850.1	1.499e-8	50.00	\| Symbols: \| Ribosomal protein L18e/L15 superfami...	[more]
AT2G47570.2	1.657e-7	47.50	\| Symbols: \| Ribosomal protein L18e/L15 superfami...	[more]
AT2G47570.1	1.657e-7	47.50	\| Symbols: \| Ribosomal protein L18e/L15 superfami...	[more]

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR421074 ID=GR421074; Name=GR421074; organism=Cicer arietinum; type=EST; length=404bp
TAAAAAACTTCTCTAAAATCATTACCAAAAAACTGAATTGTAACATACAC
AAAAATAGCACACGGAAAATAAAAAGGGGGGGAGTAAACTCCATATTGAA
AATCATAACAATTCTAACATACACTGTCTAAATATAGGAAAAAACAAAAT
AATATCAAAAGATACCAGCAATCAAACTTCTGATCACATCAAACTCTGAT
TTATCTGAATCCTCTGCTGTTCCTCTTTCCTCTGGCCTTCGCTCTAACAT
ACTTCCCTTGAGGCTTTGTGGGGCTGTGTGGCACACCAGGAGCAGGACCA
ACGGGCATTCTAGTGCTTCACAGCTTCATTGGGTTCTGTCCACCTCTAAA
AAAAACAGTGCTGAAAGCCAACTAAAGGGGCCGATCAAAAGTCAAGCATT
CACC

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